ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd20i02 |
|---|---|
| Clone Library Name | barley_pub |
>R10AC_ARATH (P59231) 60S ribosomal protein L10a-3| Length = 217 Score = 92.8 bits (229), Expect = 2e-19 Identities = 46/50 (92%), Positives = 47/50 (94%) Frame = -1 Query: 151 GLXKAGKFPTLVSHQESLESKVNETKATVKFQLKKVLCMGVXVGHLGMEE 2 GL KAGKFPTLVSHQESLESKVNETKATVKFQLKKVLCMGV VG+L MEE Sbjct: 127 GLNKAGKFPTLVSHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEE 176
>R10AA_ARATH (Q8VZB9) 60S ribosomal protein L10a-1| Length = 216 Score = 92.8 bits (229), Expect = 2e-19 Identities = 46/50 (92%), Positives = 47/50 (94%) Frame = -1 Query: 151 GLXKAGKFPTLVSHQESLESKVNETKATVKFQLKKVLCMGVXVGHLGMEE 2 GL KAGKFPTLVSHQESLESKVNETKATVKFQLKKVLCMGV VG+L MEE Sbjct: 126 GLNKAGKFPTLVSHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEE 175
>R10AB_ARATH (P59230) 60S ribosomal protein L10a-2| Length = 216 Score = 91.7 bits (226), Expect = 5e-19 Identities = 45/50 (90%), Positives = 47/50 (94%) Frame = -1 Query: 151 GLXKAGKFPTLVSHQESLESKVNETKATVKFQLKKVLCMGVXVGHLGMEE 2 GL KAGKFPTLVSHQESLE+KVNETKATVKFQLKKVLCMGV VG+L MEE Sbjct: 126 GLNKAGKFPTLVSHQESLEAKVNETKATVKFQLKKVLCMGVAVGNLSMEE 175
>RL10A_NEUCR (Q7RZS0) 60S ribosomal protein L10a| Length = 217 Score = 75.1 bits (183), Expect = 5e-14 Identities = 34/50 (68%), Positives = 41/50 (82%) Frame = -1 Query: 151 GLXKAGKFPTLVSHQESLESKVNETKATVKFQLKKVLCMGVXVGHLGMEE 2 GL KAGKFPT VSH + L K+NE K+T+KFQLKKVLCMGV VG++GM + Sbjct: 127 GLSKAGKFPTPVSHSDDLTGKLNEVKSTIKFQLKKVLCMGVAVGNVGMTQ 176
>R10AB_DROME (Q9VTP4) 60S ribosomal protein L10a-2| Length = 217 Score = 74.3 bits (181), Expect = 8e-14 Identities = 32/49 (65%), Positives = 41/49 (83%) Frame = -1 Query: 151 GLXKAGKFPTLVSHQESLESKVNETKATVKFQLKKVLCMGVXVGHLGME 5 GL KAGKFP L+SHQES+ K+ E K+T+KFQ+KKVLC+ V VGH+GM+ Sbjct: 127 GLNKAGKFPALLSHQESMIGKIEEVKSTIKFQMKKVLCLSVAVGHVGMK 175
>RL10A_SPOFR (Q963B6) 60S ribosomal protein L10a| Length = 217 Score = 72.8 bits (177), Expect = 2e-13 Identities = 32/48 (66%), Positives = 40/48 (83%) Frame = -1 Query: 151 GLXKAGKFPTLVSHQESLESKVNETKATVKFQLKKVLCMGVXVGHLGM 8 GL KAGKFP L+SHQES+ K++E KAT+KFQ+KKVLC+ V VGH+ M Sbjct: 127 GLNKAGKFPGLLSHQESMTQKIDEVKATIKFQMKKVLCLSVAVGHVDM 174
>RL10A_CAEEL (Q9N4I4) 60S ribosomal protein L10a| Length = 216 Score = 72.4 bits (176), Expect = 3e-13 Identities = 32/50 (64%), Positives = 43/50 (86%) Frame = -1 Query: 151 GLXKAGKFPTLVSHQESLESKVNETKATVKFQLKKVLCMGVXVGHLGMEE 2 GL KAGKFP++V+H ESL+SK +E +ATVKFQ+KKVLC+ V VGH+G+ + Sbjct: 126 GLNKAGKFPSVVTHGESLQSKSDEIRATVKFQMKKVLCLSVAVGHVGLTQ 175
>RL10A_ICTPU (Q90YV8) 60S ribosomal protein L10a| Length = 216 Score = 72.0 bits (175), Expect = 4e-13 Identities = 31/50 (62%), Positives = 42/50 (84%) Frame = -1 Query: 151 GLXKAGKFPTLVSHQESLESKVNETKATVKFQLKKVLCMGVXVGHLGMEE 2 GL KAGKFP+L++H E+L +KV+E K+T+KFQ+KKVLC+ V VGH+ M E Sbjct: 126 GLNKAGKFPSLLTHNENLNTKVDEVKSTIKFQMKKVLCLAVAVGHVRMSE 175
>RL1B_SCHPO (O74836) 60S ribosomal protein L1-B (L10a)| Length = 216 Score = 71.2 bits (173), Expect = 7e-13 Identities = 32/50 (64%), Positives = 39/50 (78%) Frame = -1 Query: 151 GLXKAGKFPTLVSHQESLESKVNETKATVKFQLKKVLCMGVXVGHLGMEE 2 GL KAGKFP+ VSH + L K+ E K+T+KFQLKKVLC+GV VGH+ M E Sbjct: 126 GLSKAGKFPSPVSHADDLYGKITEVKSTIKFQLKKVLCLGVAVGHVEMSE 175
>RL10A_BRARE (Q6PC69) 60S ribosomal protein L10a| Length = 216 Score = 71.2 bits (173), Expect = 7e-13 Identities = 31/50 (62%), Positives = 42/50 (84%) Frame = -1 Query: 151 GLXKAGKFPTLVSHQESLESKVNETKATVKFQLKKVLCMGVXVGHLGMEE 2 GL KAGKFP+L++H E+L +KV+E K+T+KFQ+KKVLC+ V VGH+ M E Sbjct: 126 GLNKAGKFPSLLTHNENLGTKVDEVKSTIKFQMKKVLCLAVAVGHVKMSE 175
>RL1A_SCHPO (O14363) 60S ribosomal protein L1-A (L10a)| Length = 216 Score = 70.5 bits (171), Expect = 1e-12 Identities = 32/50 (64%), Positives = 39/50 (78%) Frame = -1 Query: 151 GLXKAGKFPTLVSHQESLESKVNETKATVKFQLKKVLCMGVXVGHLGMEE 2 GL KAGKFP+ VSH + L K+ E K+T+KFQLKKVLC+GV VGH+ M E Sbjct: 126 GLSKAGKFPSPVSHSDDLYGKIIEVKSTIKFQLKKVLCLGVAVGHVDMAE 175
>RL10A_XENLA (Q7ZYS8) 60S ribosomal protein L10a| Length = 217 Score = 69.7 bits (169), Expect = 2e-12 Identities = 30/50 (60%), Positives = 42/50 (84%) Frame = -1 Query: 151 GLXKAGKFPTLVSHQESLESKVNETKATVKFQLKKVLCMGVXVGHLGMEE 2 GL KAGKFP+L++H E+L +KV+E K+T+KFQ+KKVLC+ V VGH+ + E Sbjct: 127 GLNKAGKFPSLLTHNENLVAKVDEVKSTIKFQMKKVLCLAVAVGHVKLTE 176
>RL10A_RAT (P62907) 60S ribosomal protein L10a| Length = 216 Score = 68.9 bits (167), Expect = 4e-12 Identities = 29/50 (58%), Positives = 42/50 (84%) Frame = -1 Query: 151 GLXKAGKFPTLVSHQESLESKVNETKATVKFQLKKVLCMGVXVGHLGMEE 2 GL KAGKFP+L++H E++ +KV+E K+T+KFQ+KKVLC+ V VGH+ M + Sbjct: 126 GLNKAGKFPSLLTHNENMVAKVDEVKSTIKFQMKKVLCLAVAVGHVKMTD 175
>RL10A_MOUSE (P53026) 60S ribosomal protein L10a (CSA-19) (Protein NEDD6)| (Neural precursor cell expressed developmentally down-regulated protein 6) Length = 216 Score = 68.9 bits (167), Expect = 4e-12 Identities = 29/50 (58%), Positives = 42/50 (84%) Frame = -1 Query: 151 GLXKAGKFPTLVSHQESLESKVNETKATVKFQLKKVLCMGVXVGHLGMEE 2 GL KAGKFP+L++H E++ +KV+E K+T+KFQ+KKVLC+ V VGH+ M + Sbjct: 126 GLNKAGKFPSLLTHNENMVAKVDEVKSTIKFQMKKVLCLAVAVGHVKMTD 175
>RL10A_HUMAN (P62906) 60S ribosomal protein L10a (CSA-19)| Length = 216 Score = 68.9 bits (167), Expect = 4e-12 Identities = 29/50 (58%), Positives = 42/50 (84%) Frame = -1 Query: 151 GLXKAGKFPTLVSHQESLESKVNETKATVKFQLKKVLCMGVXVGHLGMEE 2 GL KAGKFP+L++H E++ +KV+E K+T+KFQ+KKVLC+ V VGH+ M + Sbjct: 126 GLNKAGKFPSLLTHNENMVAKVDEVKSTIKFQMKKVLCLAVAVGHVKMTD 175
>RL10A_BOVIN (Q5E9E6) 60S ribosomal protein L10a| Length = 216 Score = 68.9 bits (167), Expect = 4e-12 Identities = 29/50 (58%), Positives = 42/50 (84%) Frame = -1 Query: 151 GLXKAGKFPTLVSHQESLESKVNETKATVKFQLKKVLCMGVXVGHLGMEE 2 GL KAGKFP+L++H E++ +KV+E K+T+KFQ+KKVLC+ V VGH+ M + Sbjct: 126 GLNKAGKFPSLLTHNENMVAKVDEVKSTIKFQMKKVLCLAVAVGHVKMTD 175
>RL10A_CANAL (Q9UVJ4) 60S ribosomal protein L10a| Length = 217 Score = 67.4 bits (163), Expect = 1e-11 Identities = 31/49 (63%), Positives = 39/49 (79%) Frame = -1 Query: 148 LXKAGKFPTLVSHQESLESKVNETKATVKFQLKKVLCMGVXVGHLGMEE 2 L KAG+FPT VSH + L SKV + K+T+KFQLKKVLC+ V VG++ MEE Sbjct: 128 LSKAGQFPTPVSHNDDLYSKVTDVKSTIKFQLKKVLCLAVAVGNVDMEE 176
>RL10A_ASHGO (Q755D9) 60S ribosomal protein L10a| Length = 217 Score = 66.2 bits (160), Expect = 2e-11 Identities = 30/49 (61%), Positives = 39/49 (79%) Frame = -1 Query: 148 LXKAGKFPTLVSHQESLESKVNETKATVKFQLKKVLCMGVXVGHLGMEE 2 L KAGKFPT VSH + L SKV + ++T+KFQLKKVLC+ V VG++ M+E Sbjct: 128 LSKAGKFPTPVSHNDDLYSKVTDVRSTIKFQLKKVLCLAVAVGNVEMDE 176
>RL1_YEAST (P53030) 60S ribosomal protein L1 (L10a)| Length = 217 Score = 65.9 bits (159), Expect = 3e-11 Identities = 30/49 (61%), Positives = 38/49 (77%) Frame = -1 Query: 148 LXKAGKFPTLVSHQESLESKVNETKATVKFQLKKVLCMGVXVGHLGMEE 2 L KAGKFPT VSH + L KV + ++T+KFQLKKVLC+ V VG++ MEE Sbjct: 128 LSKAGKFPTPVSHNDDLYGKVTDVRSTIKFQLKKVLCLAVAVGNVEMEE 176
>RL10A_MACFA (Q4R5P3) 60S ribosomal protein L10a| Length = 216 Score = 65.1 bits (157), Expect = 5e-11 Identities = 27/50 (54%), Positives = 41/50 (82%) Frame = -1 Query: 151 GLXKAGKFPTLVSHQESLESKVNETKATVKFQLKKVLCMGVXVGHLGMEE 2 GL KAGKFP+ ++H E++ +KV+E K+T+KFQ+K+VLC+ V VGH+ M + Sbjct: 126 GLNKAGKFPSPLTHNENMVAKVDEVKSTIKFQMKRVLCLAVAVGHVKMTD 175
>RL10A_CANGA (Q6FRF5) 60S ribosomal protein L10a| Length = 217 Score = 64.7 bits (156), Expect = 7e-11 Identities = 29/49 (59%), Positives = 38/49 (77%) Frame = -1 Query: 148 LXKAGKFPTLVSHQESLESKVNETKATVKFQLKKVLCMGVXVGHLGMEE 2 L KAGKFPT VSH + L KV + ++T+KFQLKKVLC+ V VG++ M+E Sbjct: 128 LSKAGKFPTPVSHNDDLYGKVTDVRSTIKFQLKKVLCLAVAVGNVEMDE 176
>RL10A_TRYBR (P53028) 60S ribosomal protein L10a| Length = 214 Score = 60.8 bits (146), Expect = 1e-09 Identities = 28/49 (57%), Positives = 36/49 (73%) Frame = -1 Query: 148 LXKAGKFPTLVSHQESLESKVNETKATVKFQLKKVLCMGVXVGHLGMEE 2 + + GKFPT+ + ESL KV E ++TVKFQLKKVLC+G VGH+ M E Sbjct: 125 MHRVGKFPTVCAQNESLPDKVLELQSTVKFQLKKVLCLGTCVGHVDMTE 173
>RL10A_CHLRE (Q9SW75) 60S ribosomal protein L10a| Length = 213 Score = 58.5 bits (140), Expect = 5e-09 Identities = 29/50 (58%), Positives = 38/50 (76%) Frame = -1 Query: 151 GLXKAGKFPTLVSHQESLESKVNETKATVKFQLKKVLCMGVXVGHLGMEE 2 GL KAGKFP ++ ++LE V +TK ++KFQLKKVLCMGV V ++GM E Sbjct: 125 GLNKAGKFPAPIN--KNLEEMVLDTKCSIKFQLKKVLCMGVAVANVGMTE 172
>RL10A_CAERE (Q9NBJ7) 60S ribosomal protein L10a (Fragment)| Length = 112 Score = 52.8 bits (125), Expect = 3e-07 Identities = 24/35 (68%), Positives = 31/35 (88%) Frame = -1 Query: 151 GLXKAGKFPTLVSHQESLESKVNETKATVKFQLKK 47 GL KAGKFP++V+H ESL+SK +E +ATVKFQ+KK Sbjct: 78 GLNKAGKFPSVVTHGESLQSKSDEIRATVKFQMKK 112
>RL10A_PIG (P53027) 60S ribosomal protein L10a (Fragment)| Length = 164 Score = 52.4 bits (124), Expect = 3e-07 Identities = 22/39 (56%), Positives = 32/39 (82%) Frame = -1 Query: 151 GLXKAGKFPTLVSHQESLESKVNETKATVKFQLKKVLCM 35 GL KAGKFP+L++H + +KV+E K+ VKFQ+K+VLC+ Sbjct: 126 GLNKAGKFPSLLTHNXDMVAKVDEVKSRVKFQMKEVLCL 164
>RL10A_ENTHI (O15613) 60S ribosomal protein L10a (Fragment)| Length = 165 Score = 49.7 bits (117), Expect = 2e-06 Identities = 24/46 (52%), Positives = 30/46 (65%) Frame = -1 Query: 151 GLXKAGKFPTLVSHQESLESKVNETKATVKFQLKKVLCMGVXVGHL 14 GL K GKFP + E L+ K+NE + V QLKKVLCMGV G++ Sbjct: 120 GLNKGGKFPPPLGKNEDLKVKINELQCQVNSQLKKVLCMGVGGGNV 165
>SYV_NITEU (Q82X51) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 918 Score = 28.5 bits (62), Expect = 5.3 Identities = 13/24 (54%), Positives = 17/24 (70%) Frame = +1 Query: 70 WPWSH*PWTQGTPGETPKLETFLP 141 WP+S T G P +TP+L+TFLP Sbjct: 462 WPFS----TLGWPEQTPELKTFLP 481 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 21,201,790 Number of Sequences: 219361 Number of extensions: 264204 Number of successful extensions: 849 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 835 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 846 length of database: 80,573,946 effective HSP length: 26 effective length of database: 74,870,560 effective search space used: 1796893440 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
