Clone Name | rbasd20h20 |
---|---|
Clone Library Name | barley_pub |
>RK25_PEA (P11892) 50S ribosomal protein CL25, chloroplast precursor| Length = 104 Score = 45.4 bits (106), Expect = 4e-05 Identities = 20/39 (51%), Positives = 27/39 (69%) Frame = -1 Query: 257 EGTKLHMKTRPKKTQRWDIKRRPIQYEPLPALPDDWTLV 141 + T HMKTRP+K++ D R+P Y PLP LP D+T+V Sbjct: 47 KSTAHHMKTRPRKSRLSDRNRKPTVYAPLPPLPPDFTIV 85
>PGCA_RAT (P07897) Aggrecan core protein precursor (Cartilage-specific| proteoglycan core protein) (CSPCP) Length = 2124 Score = 35.0 bits (79), Expect = 0.051 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 1/45 (2%) Frame = -1 Query: 242 HMKTRPKKTQRWDIKRRPIQYEPLPALPDDW-TLVAAGEKEDESP 111 + T P+K W+ P+ PLP +P W V A E+ ESP Sbjct: 728 YFTTEPEKQTEWEPAYTPVGTSPLPGIPPTWLPTVPAAEEHTESP 772
>PGCA_MOUSE (Q61282) Aggrecan core protein precursor (Cartilage-specific| proteoglycan core protein) (CSPCP) Length = 2132 Score = 32.0 bits (71), Expect = 0.43 Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 1/45 (2%) Frame = -1 Query: 242 HMKTRPKKTQRWDIKRRPIQYEPLPALPDDW-TLVAAGEKEDESP 111 + T P+K W+ P+ P P +P W + A E+ ESP Sbjct: 732 YFTTEPRKQTEWEPAYTPVGTSPQPGIPPTWLPTLPAAEEHTESP 776
>SIN3B_MOUSE (Q62141) Paired amphipathic helix protein Sin3b (Transcriptional| corepressor Sin3b) (Histone deacetylase complex subunit Sin3b) Length = 1098 Score = 27.7 bits (60), Expect = 8.1 Identities = 13/25 (52%), Positives = 16/25 (64%) Frame = -3 Query: 198 APPHSIRAAAGASR*LDACSCRREG 124 APP S R+ G SR +D SC+R G Sbjct: 365 APPMSDRSGDGISREIDYASCKRIG 389
>SIN3B_HUMAN (O75182) Paired amphipathic helix protein Sin3b (Transcriptional| corepressor Sin3b) (Histone deacetylase complex subunit Sin3b) Length = 1162 Score = 27.7 bits (60), Expect = 8.1 Identities = 13/25 (52%), Positives = 16/25 (64%) Frame = -3 Query: 198 APPHSIRAAAGASR*LDACSCRREG 124 APP S R+ G SR +D SC+R G Sbjct: 374 APPMSDRSGDGISREIDYASCKRIG 398 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 24,222,514 Number of Sequences: 219361 Number of extensions: 303581 Number of successful extensions: 1081 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 1066 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1080 length of database: 80,573,946 effective HSP length: 61 effective length of database: 67,192,925 effective search space used: 1612630200 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)