>RK25_PEA (P11892) 50S ribosomal protein CL25, chloroplast precursor|
          Length = 104

 Score = 45.4 bits (106), Expect = 4e-05
 Identities = 20/39 (51%), Positives = 27/39 (69%)
 Frame = -1

Query: 257 EGTKLHMKTRPKKTQRWDIKRRPIQYEPLPALPDDWTLV 141
           + T  HMKTRP+K++  D  R+P  Y PLP LP D+T+V
Sbjct: 47  KSTAHHMKTRPRKSRLSDRNRKPTVYAPLPPLPPDFTIV 85

>PGCA_RAT (P07897) Aggrecan core protein precursor (Cartilage-specific|
           proteoglycan core protein) (CSPCP)
          Length = 2124

 Score = 35.0 bits (79), Expect = 0.051
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = -1

Query: 242 HMKTRPKKTQRWDIKRRPIQYEPLPALPDDW-TLVAAGEKEDESP 111
           +  T P+K   W+    P+   PLP +P  W   V A E+  ESP
Sbjct: 728 YFTTEPEKQTEWEPAYTPVGTSPLPGIPPTWLPTVPAAEEHTESP 772

>PGCA_MOUSE (Q61282) Aggrecan core protein precursor (Cartilage-specific|
           proteoglycan core protein) (CSPCP)
          Length = 2132

 Score = 32.0 bits (71), Expect = 0.43
 Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = -1

Query: 242 HMKTRPKKTQRWDIKRRPIQYEPLPALPDDW-TLVAAGEKEDESP 111
           +  T P+K   W+    P+   P P +P  W   + A E+  ESP
Sbjct: 732 YFTTEPRKQTEWEPAYTPVGTSPQPGIPPTWLPTLPAAEEHTESP 776

>SIN3B_MOUSE (Q62141) Paired amphipathic helix protein Sin3b (Transcriptional|
           corepressor Sin3b) (Histone deacetylase complex subunit
           Sin3b)
          Length = 1098

 Score = 27.7 bits (60), Expect = 8.1
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -3

Query: 198 APPHSIRAAAGASR*LDACSCRREG 124
           APP S R+  G SR +D  SC+R G
Sbjct: 365 APPMSDRSGDGISREIDYASCKRIG 389

>SIN3B_HUMAN (O75182) Paired amphipathic helix protein Sin3b (Transcriptional|
           corepressor Sin3b) (Histone deacetylase complex subunit
           Sin3b)
          Length = 1162

 Score = 27.7 bits (60), Expect = 8.1
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -3

Query: 198 APPHSIRAAAGASR*LDACSCRREG 124
           APP S R+  G SR +D  SC+R G
Sbjct: 374 APPMSDRSGDGISREIDYASCKRIG 398


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,222,514
Number of Sequences: 219361
Number of extensions: 303581
Number of successful extensions: 1081
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1066
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1080
length of database: 80,573,946
effective HSP length: 61
effective length of database: 67,192,925
effective search space used: 1612630200
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)