>TNR4_HUMAN (P43489) Tumor necrosis factor receptor superfamily member 4|
           precursor (OX40L receptor) (ACT35 antigen) (TAX
           transcriptionally-activated glycoprotein 1 receptor)
           (CD134 antigen)
          Length = 277

 Score = 32.3 bits (72), Expect = 0.61
 Identities = 18/56 (32%), Positives = 25/56 (44%)
 Frame = -3

Query: 421 HSVGKTYDTINGTSCHQCRQKTIDTKSCCRGEDCVGVRGQFCGPCLXNRYGELVEN 254
           H VG TY + N   CH+CR        C R ++ V      C PC    Y ++V +
Sbjct: 30  HCVGDTYPS-NDRCCHECRPGNGMVSRCSRSQNTV------CRPCGPGFYNDVVSS 78

>COMP_MOUSE (Q9R0G6) Cartilage oligomeric matrix protein precursor (COMP)|
          Length = 755

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 18/65 (27%), Positives = 23/65 (35%), Gaps = 1/65 (1%)
 Frame = -3

Query: 415 VGKTYDTINGTSCHQCRQKTIDTKSCCRGEDCVGVRGQF-CGPCLXNRYGELVENVLLDS 239
           VG T+   N   C    +      +C     CV  RG F CGPC     G+         
Sbjct: 164 VGLTFAKSNKQVCTDINECETGQHNCVPNSVCVNTRGSFQCGPCQPGFVGDQTSGCQRRG 223

Query: 238 EWKCP 224
           +  CP
Sbjct: 224 QHFCP 228

>FBLN2_HUMAN (P98095) Fibulin-2 precursor|
          Length = 1184

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -3

Query: 391 NGTSCHQCRQKTIDTKSCCRGEDCVGVRGQF 299
           +G SC    +   D  +C RGE CV   G F
Sbjct: 713 DGVSCEDINECVTDLHTCSRGEHCVNTLGSF 743



 Score = 28.9 bits (63), Expect = 6.7
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -3

Query: 397  TINGTSCHQCRQKTIDTKSCCRGEDCVGVRGQF 299
            T NG SC    +  + T +C   E C  ++G F
Sbjct: 1017 TANGRSCKDVDECALGTHNCSEAETCHNIQGSF 1049

>SPR4_CAEEL (O17582) Suppressor of presenilin protein 4|
          Length = 1311

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +1

Query: 193  KCCSCKYFCKPGISILNQAKHSQQVHHICXLNKDHKIALVHQHSLP 330
            KC SC+YFC     + ++      VHH+   N    I+ +H   +P
Sbjct: 1262 KCPSCEYFC----HVSSELAFHMSVHHLTEPNARETISYLHMGLVP 1303

>COMP_RAT (P35444) Cartilage oligomeric matrix protein precursor (COMP)|
          Length = 755

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 18/65 (27%), Positives = 23/65 (35%), Gaps = 1/65 (1%)
 Frame = -3

Query: 415 VGKTYDTINGTSCHQCRQKTIDTKSCCRGEDCVGVRGQF-CGPCLXNRYGELVENVLLDS 239
           VG T+   N   C    +      +C     CV  RG F CGPC     G+         
Sbjct: 164 VGLTFAKTNKQVCTDINECETGQHNCVPNSVCVNTRGSFQCGPCQPGFVGDQRSGCQRRG 223

Query: 238 EWKCP 224
           +  CP
Sbjct: 224 QHFCP 228

>GLNA_PYRAB (Q9UY99) Glutamine synthetase (EC 6.3.1.2) (Glutamate--ammonia|
           ligase) (GS)
          Length = 439

 Score = 30.0 bits (66), Expect = 3.0
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -2

Query: 239 RMEMPGLQKYLQLQHLPKSERKVCNWYIDR 150
           R E     +YL+ +HLPK  ++V  W ++R
Sbjct: 406 RKEWESYLEYLEAKHLPKDTKRVTEWELER 435

>COMP_HUMAN (P49747) Cartilage oligomeric matrix protein precursor (COMP)|
          Length = 757

 Score = 29.6 bits (65), Expect = 3.9
 Identities = 16/65 (24%), Positives = 23/65 (35%), Gaps = 1/65 (1%)
 Frame = -3

Query: 415 VGKTYDTINGTSCHQCRQKTIDTKSCCRGEDCVGVRGQF-CGPCLXNRYGELVENVLLDS 239
           VG  +   N   C    +      +C     C+  RG F CGPC     G+        +
Sbjct: 166 VGLAFAKANKQVCTDINECETGQHNCVPNSVCINTRGSFQCGPCQPGFVGDQASGCQRGA 225

Query: 238 EWKCP 224
           +  CP
Sbjct: 226 QRFCP 230

>MECA_LACPL (Q88V56) Adapter protein mecA|
          Length = 243

 Score = 28.9 bits (63), Expect = 6.7
 Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
 Frame = +1

Query: 4   YMYRKL-QEKSNXLENCSXMANAITVAT--FTPLLSFPDTPEHCYVLAVVQFLSIYQL 168
           Y+ RKL Q  +N +E+   +A+  T  T    P L  PDTP   YVL   QF  +  L
Sbjct: 108 YLKRKLMQTDTNQVEDGQGIAHNPTKDTNDLDPYLDDPDTPTKEYVLKFDQFEDLVSL 165

>GATB_CHLTE (Q8KAE8) Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B|
           (EC 6.3.5.-) (Asp/Glu-ADT subunit B)
          Length = 475

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +3

Query: 93  SPKFSRYARTLLCPCCRAIPINIPV 167
           S KF + A T +CP C A+P  +PV
Sbjct: 26  SAKFGKPANTNVCPVCLALPGALPV 50


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,862,740
Number of Sequences: 219361
Number of extensions: 1112246
Number of successful extensions: 3002
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2908
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3001
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2968155324
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)