ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd20h17 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_550191.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1332 Score = 145 bits (73), Expect = 2e-31 Identities = 208/253 (82%), Gaps = 3/253 (1%) Strand = Plus / Minus Query: 299 ggctgtcagccttcatcggactcctgctgttctcccttggtgcagggcttctgctgccag 358 |||||||||| |||| || |||||||||| ||||||||||||| || |||||| || Sbjct: 973 ggctgtcagctctcattgggctcctgctgt---cccttggtgcaggactcctgctggcat 917 Query: 359 gaggggtggggctccgggccctccccttggcaggtgaagcactcctcctagggctgcggc 418 |||||| ||||| ||| |||||| |||| ||||||||||| |||||||||||||||| Sbjct: 916 taggggtagggctgcggttcctcccgttgggtggtgaagcacttctcctagggctgcggc 857 Query: 419 tgtcacgggggctcctcatagggctgcgactgccacgggggctcctcatagggctgcgac 478 | ||||| ||||| | | ||||||| | || | || ||||||| | |||||||||||| Sbjct: 856 tatcacgagggcttcccctagggctctgggtgtcgcgagggctccccttagggctgcgac 797 Query: 479 tgccacgggggctcttcatagggctgcgactgtctcgggggctnctnctaaggctgcgac 538 || ||||||||||| | |||||||||||||||| |||||||| | ||| |||| |||| Sbjct: 796 tgtcacgggggctccccctagggctgcgactgtcacgggggcttcccctagggctccgac 737 Query: 539 tgtcacgggggct 551 ||||||| ||||| Sbjct: 736 tgtcacgagggct 724 Score = 95.6 bits (48), Expect = 2e-16 Identities = 77/88 (87%) Strand = Plus / Minus Query: 497 tagggctgcgactgtctcgggggctnctnctaaggctgcgactgtcacgggggctnctnc 556 |||||||||||||||| |||||||| | ||| |||||||||||||||||||||| | | Sbjct: 808 tagggctgcgactgtcacgggggctccccctagggctgcgactgtcacgggggcttcccc 749 Query: 557 ttgggctgcgactgtcacgggggctcct 584 | ||||| ||||||||||| |||||||| Sbjct: 748 tagggctccgactgtcacgagggctcct 721 Score = 91.7 bits (46), Expect = 2e-15 Identities = 76/86 (88%) Strand = Plus / Minus Query: 407 tagggctgcggctgtcacgggggctcctcatagggctgcgactgccacgggggctcctca 466 |||||||||| |||||||||||||||| | |||||||||||||| |||||||||| | | Sbjct: 808 tagggctgcgactgtcacgggggctccccctagggctgcgactgtcacgggggcttcccc 749 Query: 467 tagggctgcgactgccacgggggctc 492 ||||||| |||||| |||| |||||| Sbjct: 748 tagggctccgactgtcacgagggctc 723 Score = 65.9 bits (33), Expect = 1e-07 Identities = 57/65 (87%) Strand = Plus / Minus Query: 400 ctcctcctagggctgcggctgtcacgggggctcctcatagggctgcgactgccacggggg 459 |||| |||||||||||| |||||||||||||| | | ||||||| |||||| |||| ||| Sbjct: 785 ctccccctagggctgcgactgtcacgggggcttcccctagggctccgactgtcacgaggg 726 Query: 460 ctcct 464 ||||| Sbjct: 725 ctcct 721 Score = 46.1 bits (23), Expect = 0.13 Identities = 56/67 (83%) Strand = Plus / Minus Query: 226 cgatggttgccattgtcttcgccgtccctggggctcgggctacgaccatttgcagctggg 285 ||||| |||||||||||||| ||||||||||| ||||| || ||||| ||||||| Sbjct: 1067 cgatgattgccattgtcttcataatccctggggcttgggctccggccattggcagctgta 1008 Query: 286 ctcatgt 292 ||||||| Sbjct: 1007 ctcatgt 1001
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 145 bits (73), Expect = 2e-31 Identities = 208/253 (82%), Gaps = 3/253 (1%) Strand = Plus / Plus Query: 299 ggctgtcagccttcatcggactcctgctgttctcccttggtgcagggcttctgctgccag 358 |||||||||| |||| || |||||||||| ||||||||||||| || |||||| || Sbjct: 2985688 ggctgtcagctctcattgggctcctgctgt---cccttggtgcaggactcctgctggcat 2985744 Query: 359 gaggggtggggctccgggccctccccttggcaggtgaagcactcctcctagggctgcggc 418 |||||| ||||| ||| |||||| |||| ||||||||||| |||||||||||||||| Sbjct: 2985745 taggggtagggctgcggttcctcccgttgggtggtgaagcacttctcctagggctgcggc 2985804 Query: 419 tgtcacgggggctcctcatagggctgcgactgccacgggggctcctcatagggctgcgac 478 | ||||| ||||| | | ||||||| | || | || ||||||| | |||||||||||| Sbjct: 2985805 tatcacgagggcttcccctagggctctgggtgtcgcgagggctccccttagggctgcgac 2985864 Query: 479 tgccacgggggctcttcatagggctgcgactgtctcgggggctnctnctaaggctgcgac 538 || ||||||||||| | |||||||||||||||| |||||||| | ||| |||| |||| Sbjct: 2985865 tgtcacgggggctccccctagggctgcgactgtcacgggggcttcccctagggctccgac 2985924 Query: 539 tgtcacgggggct 551 ||||||| ||||| Sbjct: 2985925 tgtcacgagggct 2985937 Score = 95.6 bits (48), Expect = 2e-16 Identities = 77/88 (87%) Strand = Plus / Plus Query: 497 tagggctgcgactgtctcgggggctnctnctaaggctgcgactgtcacgggggctnctnc 556 |||||||||||||||| |||||||| | ||| |||||||||||||||||||||| | | Sbjct: 2985853 tagggctgcgactgtcacgggggctccccctagggctgcgactgtcacgggggcttcccc 2985912 Query: 557 ttgggctgcgactgtcacgggggctcct 584 | ||||| ||||||||||| |||||||| Sbjct: 2985913 tagggctccgactgtcacgagggctcct 2985940 Score = 91.7 bits (46), Expect = 2e-15 Identities = 76/86 (88%) Strand = Plus / Plus Query: 407 tagggctgcggctgtcacgggggctcctcatagggctgcgactgccacgggggctcctca 466 |||||||||| |||||||||||||||| | |||||||||||||| |||||||||| | | Sbjct: 2985853 tagggctgcgactgtcacgggggctccccctagggctgcgactgtcacgggggcttcccc 2985912 Query: 467 tagggctgcgactgccacgggggctc 492 ||||||| |||||| |||| |||||| Sbjct: 2985913 tagggctccgactgtcacgagggctc 2985938 Score = 65.9 bits (33), Expect = 1e-07 Identities = 57/65 (87%) Strand = Plus / Plus Query: 400 ctcctcctagggctgcggctgtcacgggggctcctcatagggctgcgactgccacggggg 459 |||| |||||||||||| |||||||||||||| | | ||||||| |||||| |||| ||| Sbjct: 2985876 ctccccctagggctgcgactgtcacgggggcttcccctagggctccgactgtcacgaggg 2985935 Query: 460 ctcct 464 ||||| Sbjct: 2985936 ctcct 2985940 Score = 46.1 bits (23), Expect = 0.13 Identities = 56/67 (83%) Strand = Plus / Plus Query: 226 cgatggttgccattgtcttcgccgtccctggggctcgggctacgaccatttgcagctggg 285 ||||| |||||||||||||| ||||||||||| ||||| || ||||| ||||||| Sbjct: 2985594 cgatgattgccattgtcttcataatccctggggcttgggctccggccattggcagctgta 2985653 Query: 286 ctcatgt 292 ||||||| Sbjct: 2985654 ctcatgt 2985660
>dbj|AP003225.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0011G08 Length = 139490 Score = 145 bits (73), Expect = 2e-31 Identities = 208/253 (82%), Gaps = 3/253 (1%) Strand = Plus / Plus Query: 299 ggctgtcagccttcatcggactcctgctgttctcccttggtgcagggcttctgctgccag 358 |||||||||| |||| || |||||||||| ||||||||||||| || |||||| || Sbjct: 67205 ggctgtcagctctcattgggctcctgctgt---cccttggtgcaggactcctgctggcat 67261 Query: 359 gaggggtggggctccgggccctccccttggcaggtgaagcactcctcctagggctgcggc 418 |||||| ||||| ||| |||||| |||| ||||||||||| |||||||||||||||| Sbjct: 67262 taggggtagggctgcggttcctcccgttgggtggtgaagcacttctcctagggctgcggc 67321 Query: 419 tgtcacgggggctcctcatagggctgcgactgccacgggggctcctcatagggctgcgac 478 | ||||| ||||| | | ||||||| | || | || ||||||| | |||||||||||| Sbjct: 67322 tatcacgagggcttcccctagggctctgggtgtcgcgagggctccccttagggctgcgac 67381 Query: 479 tgccacgggggctcttcatagggctgcgactgtctcgggggctnctnctaaggctgcgac 538 || ||||||||||| | |||||||||||||||| |||||||| | ||| |||| |||| Sbjct: 67382 tgtcacgggggctccccctagggctgcgactgtcacgggggcttcccctagggctccgac 67441 Query: 539 tgtcacgggggct 551 ||||||| ||||| Sbjct: 67442 tgtcacgagggct 67454 Score = 95.6 bits (48), Expect = 2e-16 Identities = 77/88 (87%) Strand = Plus / Plus Query: 497 tagggctgcgactgtctcgggggctnctnctaaggctgcgactgtcacgggggctnctnc 556 |||||||||||||||| |||||||| | ||| |||||||||||||||||||||| | | Sbjct: 67370 tagggctgcgactgtcacgggggctccccctagggctgcgactgtcacgggggcttcccc 67429 Query: 557 ttgggctgcgactgtcacgggggctcct 584 | ||||| ||||||||||| |||||||| Sbjct: 67430 tagggctccgactgtcacgagggctcct 67457 Score = 91.7 bits (46), Expect = 2e-15 Identities = 76/86 (88%) Strand = Plus / Plus Query: 407 tagggctgcggctgtcacgggggctcctcatagggctgcgactgccacgggggctcctca 466 |||||||||| |||||||||||||||| | |||||||||||||| |||||||||| | | Sbjct: 67370 tagggctgcgactgtcacgggggctccccctagggctgcgactgtcacgggggcttcccc 67429 Query: 467 tagggctgcgactgccacgggggctc 492 ||||||| |||||| |||| |||||| Sbjct: 67430 tagggctccgactgtcacgagggctc 67455 Score = 65.9 bits (33), Expect = 1e-07 Identities = 57/65 (87%) Strand = Plus / Plus Query: 400 ctcctcctagggctgcggctgtcacgggggctcctcatagggctgcgactgccacggggg 459 |||| |||||||||||| |||||||||||||| | | ||||||| |||||| |||| ||| Sbjct: 67393 ctccccctagggctgcgactgtcacgggggcttcccctagggctccgactgtcacgaggg 67452 Query: 460 ctcct 464 ||||| Sbjct: 67453 ctcct 67457 Score = 46.1 bits (23), Expect = 0.13 Identities = 56/67 (83%) Strand = Plus / Plus Query: 226 cgatggttgccattgtcttcgccgtccctggggctcgggctacgaccatttgcagctggg 285 ||||| |||||||||||||| ||||||||||| ||||| || ||||| ||||||| Sbjct: 67111 cgatgattgccattgtcttcataatccctggggcttgggctccggccattggcagctgta 67170 Query: 286 ctcatgt 292 ||||||| Sbjct: 67171 ctcatgt 67177
>dbj|AK071635.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023100L15, full insert sequence Length = 1377 Score = 145 bits (73), Expect = 2e-31 Identities = 208/253 (82%), Gaps = 3/253 (1%) Strand = Plus / Minus Query: 299 ggctgtcagccttcatcggactcctgctgttctcccttggtgcagggcttctgctgccag 358 |||||||||| |||| || |||||||||| ||||||||||||| || |||||| || Sbjct: 1018 ggctgtcagctctcattgggctcctgctgt---cccttggtgcaggactcctgctggcat 962 Query: 359 gaggggtggggctccgggccctccccttggcaggtgaagcactcctcctagggctgcggc 418 |||||| ||||| ||| |||||| |||| ||||||||||| |||||||||||||||| Sbjct: 961 taggggtagggctgcggttcctcccgttgggtggtgaagcacttctcctagggctgcggc 902 Query: 419 tgtcacgggggctcctcatagggctgcgactgccacgggggctcctcatagggctgcgac 478 | ||||| ||||| | | ||||||| | || | || ||||||| | |||||||||||| Sbjct: 901 tatcacgagggcttcccctagggctctgggtgtcgcgagggctccccttagggctgcgac 842 Query: 479 tgccacgggggctcttcatagggctgcgactgtctcgggggctnctnctaaggctgcgac 538 || ||||||||||| | |||||||||||||||| |||||||| | ||| |||| |||| Sbjct: 841 tgtcacgggggctccccctagggctgcgactgtcacgggggcttcccctagggctccgac 782 Query: 539 tgtcacgggggct 551 ||||||| ||||| Sbjct: 781 tgtcacgagggct 769 Score = 95.6 bits (48), Expect = 2e-16 Identities = 77/88 (87%) Strand = Plus / Minus Query: 497 tagggctgcgactgtctcgggggctnctnctaaggctgcgactgtcacgggggctnctnc 556 |||||||||||||||| |||||||| | ||| |||||||||||||||||||||| | | Sbjct: 853 tagggctgcgactgtcacgggggctccccctagggctgcgactgtcacgggggcttcccc 794 Query: 557 ttgggctgcgactgtcacgggggctcct 584 | ||||| ||||||||||| |||||||| Sbjct: 793 tagggctccgactgtcacgagggctcct 766 Score = 91.7 bits (46), Expect = 2e-15 Identities = 76/86 (88%) Strand = Plus / Minus Query: 407 tagggctgcggctgtcacgggggctcctcatagggctgcgactgccacgggggctcctca 466 |||||||||| |||||||||||||||| | |||||||||||||| |||||||||| | | Sbjct: 853 tagggctgcgactgtcacgggggctccccctagggctgcgactgtcacgggggcttcccc 794 Query: 467 tagggctgcgactgccacgggggctc 492 ||||||| |||||| |||| |||||| Sbjct: 793 tagggctccgactgtcacgagggctc 768 Score = 65.9 bits (33), Expect = 1e-07 Identities = 57/65 (87%) Strand = Plus / Minus Query: 400 ctcctcctagggctgcggctgtcacgggggctcctcatagggctgcgactgccacggggg 459 |||| |||||||||||| |||||||||||||| | | ||||||| |||||| |||| ||| Sbjct: 830 ctccccctagggctgcgactgtcacgggggcttcccctagggctccgactgtcacgaggg 771 Query: 460 ctcct 464 ||||| Sbjct: 770 ctcct 766 Score = 46.1 bits (23), Expect = 0.13 Identities = 56/67 (83%) Strand = Plus / Minus Query: 226 cgatggttgccattgtcttcgccgtccctggggctcgggctacgaccatttgcagctggg 285 ||||| |||||||||||||| ||||||||||| ||||| || ||||| ||||||| Sbjct: 1112 cgatgattgccattgtcttcataatccctggggcttgggctccggccattggcagctgta 1053 Query: 286 ctcatgt 292 ||||||| Sbjct: 1052 ctcatgt 1046
>dbj|AK060171.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-311-F07, full insert sequence Length = 1332 Score = 145 bits (73), Expect = 2e-31 Identities = 208/253 (82%), Gaps = 3/253 (1%) Strand = Plus / Minus Query: 299 ggctgtcagccttcatcggactcctgctgttctcccttggtgcagggcttctgctgccag 358 |||||||||| |||| || |||||||||| ||||||||||||| || |||||| || Sbjct: 973 ggctgtcagctctcattgggctcctgctgt---cccttggtgcaggactcctgctggcat 917 Query: 359 gaggggtggggctccgggccctccccttggcaggtgaagcactcctcctagggctgcggc 418 |||||| ||||| ||| |||||| |||| ||||||||||| |||||||||||||||| Sbjct: 916 taggggtagggctgcggttcctcccgttgggtggtgaagcacttctcctagggctgcggc 857 Query: 419 tgtcacgggggctcctcatagggctgcgactgccacgggggctcctcatagggctgcgac 478 | ||||| ||||| | | ||||||| | || | || ||||||| | |||||||||||| Sbjct: 856 tatcacgagggcttcccctagggctctgggtgtcgcgagggctccccttagggctgcgac 797 Query: 479 tgccacgggggctcttcatagggctgcgactgtctcgggggctnctnctaaggctgcgac 538 || ||||||||||| | |||||||||||||||| |||||||| | ||| |||| |||| Sbjct: 796 tgtcacgggggctccccctagggctgcgactgtcacgggggcttcccctagggctccgac 737 Query: 539 tgtcacgggggct 551 ||||||| ||||| Sbjct: 736 tgtcacgagggct 724 Score = 95.6 bits (48), Expect = 2e-16 Identities = 77/88 (87%) Strand = Plus / Minus Query: 497 tagggctgcgactgtctcgggggctnctnctaaggctgcgactgtcacgggggctnctnc 556 |||||||||||||||| |||||||| | ||| |||||||||||||||||||||| | | Sbjct: 808 tagggctgcgactgtcacgggggctccccctagggctgcgactgtcacgggggcttcccc 749 Query: 557 ttgggctgcgactgtcacgggggctcct 584 | ||||| ||||||||||| |||||||| Sbjct: 748 tagggctccgactgtcacgagggctcct 721 Score = 91.7 bits (46), Expect = 2e-15 Identities = 76/86 (88%) Strand = Plus / Minus Query: 407 tagggctgcggctgtcacgggggctcctcatagggctgcgactgccacgggggctcctca 466 |||||||||| |||||||||||||||| | |||||||||||||| |||||||||| | | Sbjct: 808 tagggctgcgactgtcacgggggctccccctagggctgcgactgtcacgggggcttcccc 749 Query: 467 tagggctgcgactgccacgggggctc 492 ||||||| |||||| |||| |||||| Sbjct: 748 tagggctccgactgtcacgagggctc 723 Score = 65.9 bits (33), Expect = 1e-07 Identities = 57/65 (87%) Strand = Plus / Minus Query: 400 ctcctcctagggctgcggctgtcacgggggctcctcatagggctgcgactgccacggggg 459 |||| |||||||||||| |||||||||||||| | | ||||||| |||||| |||| ||| Sbjct: 785 ctccccctagggctgcgactgtcacgggggcttcccctagggctccgactgtcacgaggg 726 Query: 460 ctcct 464 ||||| Sbjct: 725 ctcct 721 Score = 46.1 bits (23), Expect = 0.13 Identities = 56/67 (83%) Strand = Plus / Minus Query: 226 cgatggttgccattgtcttcgccgtccctggggctcgggctacgaccatttgcagctggg 285 ||||| |||||||||||||| ||||||||||| ||||| || ||||| ||||||| Sbjct: 1067 cgatgattgccattgtcttcataatccctggggcttgggctccggccattggcagctgta 1008 Query: 286 ctcatgt 292 ||||||| Sbjct: 1007 ctcatgt 1001
>gb|AC165346.4| Mus musculus BAC clone RP23-354N5 from chromosome 13, complete sequence Length = 233740 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Minus Query: 339 tgcagggcttctgctgccagga 360 |||||||||||||||||||||| Sbjct: 143566 tgcagggcttctgctgccagga 143545
>gb|AC124183.4| Mus musculus BAC clone RP23-213I18 from 13, complete sequence Length = 215251 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Plus Query: 339 tgcagggcttctgctgccagga 360 |||||||||||||||||||||| Sbjct: 150987 tgcagggcttctgctgccagga 151008
>gb|DQ415920.1| Cleome spinosa clone BAC Cs3, complete sequence Length = 141360 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 109 gtaggaagaatttgatcgac 128 |||||||||||||||||||| Sbjct: 83348 gtaggaagaatttgatcgac 83367
>gb|AC073089.5| Homo sapiens BAC clone RP11-324F21 from 7, complete sequence Length = 171788 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 134 actctcaccaggtgatgcac 153 |||||||||||||||||||| Sbjct: 90667 actctcaccaggtgatgcac 90686
>gb|AC123044.4| Mus musculus BAC clone RP24-548B7 from chromosome 5, complete sequence Length = 184772 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 152 actcccactgggtgaacact 171 |||||||||||||||||||| Sbjct: 99002 actcccactgggtgaacact 99021
>gb|AE002160.2| Chlamydia muridarum Nigg, complete genome Length = 1072950 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 338 gtgcagggcttctgctgcca 357 |||||||||||||||||||| Sbjct: 408265 gtgcagggcttctgctgcca 408284
>gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome Length = 5751492 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 169 actggaagaatttgatccacttaa 192 |||||||||||||||||| ||||| Sbjct: 759706 actggaagaatttgatccgcttaa 759683 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,947,529 Number of Sequences: 3902068 Number of extensions: 3947529 Number of successful extensions: 69482 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 12 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 69377 Number of HSP's gapped (non-prelim): 83 length of query: 584 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 561 effective length of database: 17,143,297,704 effective search space: 9617390011944 effective search space used: 9617390011944 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
