ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbasd20h12 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 137 bits (69), Expect = 4e-29 Identities = 222/273 (81%) Strand = Plus / Plus Query: 41 tgatttggaagttgcatgtaggtgctcgagttaggccgacaccctccaactatcatccga 100 |||||||| || |||||||| ||||| || || || | ||||| ||||| ||||||||| Sbjct: 14383150 tgatttgggagctgcatgtacgtgcttgaattgggtaggcacccgccaacaatcatccga 14383209 Query: 101 ccgtaggccgcaaatgcgttttcagggctgccagagacgctgtacccccggataagggcg 160 || ||||| ||| | || | |||| ||||| || || |||||||||| ||||| ||| Sbjct: 14383210 ccataggcagcataggcactatcagtactgccggaaacactgtaccccctaataagagcg 14383269 Query: 161 ttgtatgtgaaaacattgggcttccagcctttcgccagcagttcttcatacattttgccg 220 || ||||||||||| || |||||||||||||||| ||| || |||||||||||||| || Sbjct: 14383270 ttatatgtgaaaacgttaggcttccagcctttcgtcagtagctcttcatacattttccca 14383329 Query: 221 gcttccgcggccttccctgctttgcccaggtagaggatcagtgagttgtacgtgtacagg 280 ||||| || |||||||||||||| || | || ||| || ||||| || || ||||||| | Sbjct: 14383330 gcttcagcagccttccctgcttttcctaagtggagaattagtgaattataagtgtacaag 14383389 Query: 281 ttcggggcgattcctttcttctccatgtcattg 313 |||||| | ||||| ||||||| ||| |||||| Sbjct: 14383390 ttcgggacaattcccttcttctgcatctcattg 14383422 Score = 44.1 bits (22), Expect = 0.50 Identities = 37/42 (88%) Strand = Plus / Plus Query: 476 gtgtatgattttatatctgggttcatcccctgctccaccata 517 ||||| ||||||||||||||||| || ||||| || |||||| Sbjct: 14383585 gtgtaggattttatatctgggtttattccctggtcaaccata 14383626
>gb|AC027662.2|AC027662 Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0053G13, complete sequence Length = 138245 Score = 137 bits (69), Expect = 4e-29 Identities = 222/273 (81%) Strand = Plus / Plus Query: 41 tgatttggaagttgcatgtaggtgctcgagttaggccgacaccctccaactatcatccga 100 |||||||| || |||||||| ||||| || || || | ||||| ||||| ||||||||| Sbjct: 130425 tgatttgggagctgcatgtacgtgcttgaattgggtaggcacccgccaacaatcatccga 130484 Query: 101 ccgtaggccgcaaatgcgttttcagggctgccagagacgctgtacccccggataagggcg 160 || ||||| ||| | || | |||| ||||| || || |||||||||| ||||| ||| Sbjct: 130485 ccataggcagcataggcactatcagtactgccggaaacactgtaccccctaataagagcg 130544 Query: 161 ttgtatgtgaaaacattgggcttccagcctttcgccagcagttcttcatacattttgccg 220 || ||||||||||| || |||||||||||||||| ||| || |||||||||||||| || Sbjct: 130545 ttatatgtgaaaacgttaggcttccagcctttcgtcagtagctcttcatacattttccca 130604 Query: 221 gcttccgcggccttccctgctttgcccaggtagaggatcagtgagttgtacgtgtacagg 280 ||||| || |||||||||||||| || | || ||| || ||||| || || ||||||| | Sbjct: 130605 gcttcagcagccttccctgcttttcctaagtggagaattagtgaattataagtgtacaag 130664 Query: 281 ttcggggcgattcctttcttctccatgtcattg 313 |||||| | ||||| ||||||| ||| |||||| Sbjct: 130665 ttcgggacaattcccttcttctgcatctcattg 130697 Score = 44.1 bits (22), Expect = 0.50 Identities = 37/42 (88%) Strand = Plus / Plus Query: 476 gtgtatgattttatatctgggttcatcccctgctccaccata 517 ||||| ||||||||||||||||| || ||||| || |||||| Sbjct: 130860 gtgtaggattttatatctgggtttattccctggtcaaccata 130901
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 137 bits (69), Expect = 4e-29 Identities = 222/273 (81%) Strand = Plus / Plus Query: 41 tgatttggaagttgcatgtaggtgctcgagttaggccgacaccctccaactatcatccga 100 |||||||| || |||||||| ||||| || || || | ||||| ||||| ||||||||| Sbjct: 14391392 tgatttgggagctgcatgtacgtgcttgaattgggtaggcacccgccaacaatcatccga 14391451 Query: 101 ccgtaggccgcaaatgcgttttcagggctgccagagacgctgtacccccggataagggcg 160 || ||||| ||| | || | |||| ||||| || || |||||||||| ||||| ||| Sbjct: 14391452 ccataggcagcataggcactatcagtactgccggaaacactgtaccccctaataagagcg 14391511 Query: 161 ttgtatgtgaaaacattgggcttccagcctttcgccagcagttcttcatacattttgccg 220 || ||||||||||| || |||||||||||||||| ||| || |||||||||||||| || Sbjct: 14391512 ttatatgtgaaaacgttaggcttccagcctttcgtcagtagctcttcatacattttccca 14391571 Query: 221 gcttccgcggccttccctgctttgcccaggtagaggatcagtgagttgtacgtgtacagg 280 ||||| || |||||||||||||| || | || ||| || ||||| || || ||||||| | Sbjct: 14391572 gcttcagcagccttccctgcttttcctaagtggagaattagtgaattataagtgtacaag 14391631 Query: 281 ttcggggcgattcctttcttctccatgtcattg 313 |||||| | ||||| ||||||| ||| |||||| Sbjct: 14391632 ttcgggacaattcccttcttctgcatctcattg 14391664 Score = 44.1 bits (22), Expect = 0.50 Identities = 37/42 (88%) Strand = Plus / Plus Query: 476 gtgtatgattttatatctgggttcatcccctgctccaccata 517 ||||| ||||||||||||||||| || ||||| || |||||| Sbjct: 14391827 gtgtaggattttatatctgggtttattccctggtcaaccata 14391868
>ref|NM_196545.1| Oryza sativa (japonica cultivar-group) unknown protein (OSJNBa0053G13.19), mRNA Length = 3840 Score = 131 bits (66), Expect = 3e-27 Identities = 192/234 (82%) Strand = Plus / Minus Query: 80 caccctccaactatcatccgaccgtaggccgcaaatgcgttttcagggctgccagagacg 139 ||||| ||||| ||||||||||| ||||| ||| | || | |||| ||||| || || Sbjct: 3602 cacccgccaacaatcatccgaccataggcagcataggcactatcagtactgccggaaaca 3543 Query: 140 ctgtacccccggataagggcgttgtatgtgaaaacattgggcttccagcctttcgccagc 199 |||||||||| ||||| ||||| ||||||||||| || |||||||||||||||| ||| Sbjct: 3542 ctgtaccccctaataagagcgttatatgtgaaaacgttaggcttccagcctttcgtcagt 3483 Query: 200 agttcttcatacattttgccggcttccgcggccttccctgctttgcccaggtagaggatc 259 || |||||||||||||| || ||||| || |||||||||||||| || | || ||| || Sbjct: 3482 agctcttcatacattttcccagcttcagcagccttccctgcttttcctaagtggagaatt 3423 Query: 260 agtgagttgtacgtgtacaggttcggggcgattcctttcttctccatgtcattg 313 ||||| || || ||||||| ||||||| | ||||| ||||||| ||| |||||| Sbjct: 3422 agtgaattataagtgtacaagttcgggacaattcccttcttctgcatctcattg 3369 Score = 44.1 bits (22), Expect = 0.50 Identities = 37/42 (88%) Strand = Plus / Minus Query: 476 gtgtatgattttatatctgggttcatcccctgctccaccata 517 ||||| ||||||||||||||||| || ||||| || |||||| Sbjct: 3206 gtgtaggattttatatctgggtttattccctggtcaaccata 3165
>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome Length = 5650368 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Plus Query: 452 gcgcagagggtgtcgatgacaa 473 |||||||||||||||||||||| Sbjct: 1859028 gcgcagagggtgtcgatgacaa 1859049
>dbj|AK119359.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-131-G05, full insert sequence Length = 2971 Score = 44.1 bits (22), Expect = 0.50 Identities = 37/42 (88%) Strand = Plus / Minus Query: 476 gtgtatgattttatatctgggttcatcccctgctccaccata 517 ||||| ||||||||||||||||| || ||||| || |||||| Sbjct: 2958 gtgtaggattttatatctgggtttattccctggtcaaccata 2917
>emb|AJ303349.1|CRU303349 Capsella rubella ORF1, ORF2, ORF3, ORF4, ORF5 and ORF6 (partial) Length = 27056 Score = 44.1 bits (22), Expect = 0.50 Identities = 31/34 (91%) Strand = Plus / Plus Query: 144 acccccggataagggcgttgtatgtgaaaacatt 177 |||||||||| |||| ||||||||||||||||| Sbjct: 26818 acccccggatcagggaattgtatgtgaaaacatt 26851
>ref|XM_655827.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN3315.2), mRNA Length = 1713 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 477 tgtatgattttatatctggg 496 |||||||||||||||||||| Sbjct: 184 tgtatgattttatatctggg 165
>gb|AC134882.2| Homo sapiens BAC clone RP11-886I11 from Y, complete sequence Length = 152654 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 290 attcctttcttctccatgtcattg 313 ||||||||||| |||||||||||| Sbjct: 98838 attcctttcttttccatgtcattg 98815
>emb|AL137857.29| Human DNA sequence from clone RP5-1166H10 on chromosome 1p33-35.1 Contains the MATN1 gene for matrilin 1 cartilage matrix protein, a novel gene (FLJ46197, FLJ33163), the 3' end of the gene for Lysosomal-associated multispanning membrane protein-5 (LAPTM5) and a CpG island, complete sequence Length = 152042 Score = 40.1 bits (20), Expect = 7.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 492 ctgggttcatcccctgctccaccatact 519 ||||||||| ||||||||||||||||| Sbjct: 138613 ctgggttcacgccctgctccaccatact 138586
>emb|BX294143.1| Pirellula sp. strain 1 complete genome; segment 11/24 Length = 303250 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 214 tttgccggcttccgcggcct 233 |||||||||||||||||||| Sbjct: 220366 tttgccggcttccgcggcct 220385
>emb|AL596171.1| Listeria innocua Clip11262 complete genome, segment 9/12 Length = 258650 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 404 tctgtaagctgtttgaagta 423 |||||||||||||||||||| Sbjct: 137430 tctgtaagctgtttgaagta 137411
>dbj|AK128076.1| Homo sapiens cDNA FLJ46197 fis, clone TESTI4007565 Length = 4281 Score = 40.1 bits (20), Expect = 7.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 492 ctgggttcatcccctgctccaccatact 519 ||||||||| ||||||||||||||||| Sbjct: 2911 ctgggttcacgccctgctccaccatact 2884
>gb|AC092747.10| Homo sapiens 12p BAC RP11-582E3 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 162400 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 476 gtgtatgattttatatctgggttc 499 |||||||||||||| ||||||||| Sbjct: 16974 gtgtatgattttatttctgggttc 16997
>ref|NM_174312.2| Bos taurus erythrocyte membrane protein band 4.2 (EPB42), mRNA Length = 2475 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 230 gccttccctgctttgcccag 249 |||||||||||||||||||| Sbjct: 1855 gccttccctgctttgcccag 1874
>gb|AF030030.1|AF030030 Bos taurus erythrocyte protein 4.2 (BEP42) mRNA, BEP42-75 allele, complete cds Length = 2123 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 230 gccttccctgctttgcccag 249 |||||||||||||||||||| Sbjct: 1714 gccttccctgctttgcccag 1733
>gb|AF030029.1|AF030029 Bos taurus erythrocyte protein 4.2 (BEP42) mRNA, BEP42-76 allele, complete cds Length = 2475 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 230 gccttccctgctttgcccag 249 |||||||||||||||||||| Sbjct: 1855 gccttccctgctttgcccag 1874 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,571,935 Number of Sequences: 3902068 Number of extensions: 4571935 Number of successful extensions: 82788 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 17 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 82714 Number of HSP's gapped (non-prelim): 70 length of query: 576 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 553 effective length of database: 17,143,297,704 effective search space: 9480243630312 effective search space used: 9480243630312 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
