ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd20h10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK103327.1| Oryza sativa (japonica cultivar-group) cDNA clon... 396 e-107
2dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 153 8e-34
3dbj|AP003510.3| Oryza sativa (japonica cultivar-group) genomic D... 153 8e-34
4ref|XM_464101.1| Oryza sativa (japonica cultivar-group), mRNA 76 1e-10
5dbj|AB112671.1| Cucumis sativus CsARF1 mRNA for auxin response f... 74 6e-10
6gb|AC144483.10| Medicago truncatula clone mth2-12f13, complete s... 68 4e-08
7gb|AY105182.1| Zea mays PCO117620 mRNA sequence 62 2e-06
8dbj|AP004472.1| Lotus japonicus genomic DNA, chromosome 4, clone... 62 2e-06
9gb|AY008392.1| Arabidopsis thaliana ARF7 (ARF7) gene, complete cds 60 9e-06
10gb|AF296832.1|T1M15 Arabidopsis thaliana BAC T1M15 60 9e-06
11gb|AF186466.1|AF186466 Arabidopsis thaliana non-phototropic hypo... 60 9e-06
12ref|NM_122080.2| Arabidopsis thaliana NPH4 (NON-PHOTOTROPHIC HYP... 58 4e-05
13ref|NM_180715.1| Arabidopsis thaliana NPH4 (NON-PHOTOTROPHIC HYP... 58 4e-05
14ref|NM_180716.1| Arabidopsis thaliana NPH4 (NON-PHOTOTROPHIC HYP... 58 4e-05
15gb|AY080595.1| Arabidopsis thaliana unknown protein (At5g20730) ... 58 4e-05
16gb|AF042195.1|AF042195 Arabidopsis thaliana auxin response facto... 58 4e-05
17gb|AF022368.1|AF022368 Arabidopsis thaliana BIPOSTO (BIP) mRNA, ... 58 4e-05
18gb|AY669789.1| Arabidopsis thaliana clone C105344 ARF7 (At5g2073... 58 4e-05
19gb|U79556.1|U79556 Arabidopsis thaliana IAA25 (IAA25) mRNA, part... 58 4e-05
20gb|U79555.1|U79555 Arabidopsis thaliana IAA23 (IAA23) mRNA, part... 58 4e-05
21gb|U49077.1|ATU49077 Arabidopsis thaliana early auxin-induced (I... 58 4e-05
22gb|DQ153984.1| Gossypium arboreum auxin response factor 2 (ARF2)... 52 0.002
23dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.009
24dbj|AP005294.3| Oryza sativa (japonica cultivar-group) genomic D... 50 0.009
25dbj|AK103312.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.009
26dbj|AB071296.1| Oryza sativa OsARF7a mRNA for auxin response fac... 50 0.009
27gb|U53672.2|ATU53672 Arabidopsis thaliana early auxin-induced IA... 46 0.13
28ref|NM_101780.1| Arabidopsis thaliana ARF19; transcription facto... 46 0.13
29ref|XM_483368.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.13
30gb|AC107206.4| Oryza sativa chromosome 3 BAC OSJNBa0063J18 genom... 46 0.13
31gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 46 0.13
32dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.13
33emb|AJ441312.1|ATH441312 Arabidopsis thaliana mRNA for early aux... 46 0.13
34gb|AY110307.1| Zea mays CL18202_1 mRNA sequence 46 0.13
35gb|AY669794.1| Arabidopsis thaliana clone C105352 ARF19 (At1g192... 46 0.13
36gb|DQ323908.1| Glycine max myo-inositol-1-phosphate synthase (MI... 46 0.13
37dbj|AB071297.1| Oryza sativa OsARF7b mRNA for auxin response fac... 46 0.13
38emb|BX908780.7| Zebrafish DNA sequence from clone CH211-198K9 in... 44 0.53
39emb|CR385085.9| Zebrafish DNA sequence from clone CH211-195A16, ... 44 0.53
40dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.53
41dbj|AP001072.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.53
42emb|BX005463.5| Zebrafish DNA sequence from clone CH211-177H19 i... 44 0.53
43gb|AE008450.1| Streptococcus pneumoniae R6 section 66 of 184 of ... 42 2.1
44gb|AE005672.2| Streptococcus pneumoniae TIGR4, complete genome 42 2.1
45dbj|AP003726.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.1
46dbj|AP004324.2| Oryza sativa (japonica cultivar-group) genomic D... 42 2.1
47gb|AF052208.1|AF052208 Streptococcus pneumoniae competence prote... 42 2.1
48ref|NM_123060.2| Arabidopsis thaliana ARF8 (AUXIN RESPONSE FACTO... 40 8.2
49gb|AC113041.9| Mus musculus chromosome 8, clone RP23-240K12, com... 40 8.2
50gb|AC169702.1| Rhesus Macaque BAC CH250-107F18 (Children's Hosp... 40 8.2
51gb|AC186553.1| Pan troglodytes chromosome 6 clone CH251-664D19, ... 40 8.2
52gb|AC183596.2| Pan troglodytes BAC clone CH251-679I13 from chrom... 40 8.2
53ref|XM_722297.1| Plasmodium yoelii yoelii str. 17XNL aspartyl pr... 40 8.2
54gb|AC113085.6| Mus musculus chromosome 8, clone RP23-292P21, com... 40 8.2
55gb|AC164009.3| Mus musculus chromosome 18, clone RP24-362C21, co... 40 8.2
56gb|AC182732.2| Pan troglodytes BAC clone CH251-716H13 from chrom... 40 8.2
57gb|AC182399.3| Pan troglodytes BAC clone CH251-19C24 from chromo... 40 8.2
58gb|AC092237.1|AC092237 Drosophila melanogaster, chromosome 2L, r... 40 8.2
59gb|AC073528.26|AC073528 Homo sapiens 12 BAC RP11-8P16 (Roswell P... 40 8.2
60gb|AC017007.9| Homo sapiens BAC clone RP11-119H12 from 4, comple... 40 8.2
61gb|AC073907.25| Homo sapiens 12 BAC RP11-202G24 (Roswell Park Ca... 40 8.2
62dbj|AB024026.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 40 8.2
63gb|AF042196.1|AF042196 Arabidopsis thaliana auxin response facto... 40 8.2
64gb|AE003628.2| Drosophila melanogaster chromosome 2L, section 37... 40 8.2
65gb|AY669790.1| Arabidopsis thaliana clone C105345 ARF8 (At5g3702... 40 8.2
66gb|AC005454.1|AC005454 Drosophila melanogaster, chromosome 2R, r... 40 8.2
67emb|AL772135.14| Mouse DNA sequence from clone RP23-162G11 on ch... 40 8.2 
>dbj|AK103327.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033125L14, full
            insert sequence
          Length = 4166

 Score =  396 bits (200), Expect = e-107
 Identities = 344/392 (87%)
 Strand = Plus / Minus

                                                                        
Query: 213  cctctccatgcatttgcatcatcggatgcgctacaggcttgtgtttgtggagggataccg 272
            ||||||||||||||||||||||| || || |||||||| ||||||||||||||||  || 
Sbjct: 3727 cctctccatgcatttgcatcatcagaggcactacaggcctgtgtttgtggagggacgcca 3668

                                                                        
Query: 273  ccaaggtcgccatccaaactcatctgttgcacttcaacagatgataatattttgatgctc 332
            |||||||| |||||||| ||||||||||| |||||| ||| ||| | |||||||||||||
Sbjct: 3667 ccaaggtcaccatccaagctcatctgttgtacttcagcagctgagagtattttgatgctc 3608

                                                                        
Query: 333  ttcacacagctcacaaactcctcccatgggtcatcaccaacaaggaggatgtcgttttca 392
            |||||||||| |||||| |||||||| ||||| || || ||||| ||||| || || |||
Sbjct: 3607 ttcacacagcccacaaattcctcccaagggtcgtcgccgacaagaaggatatcattctca 3548

                                                                        
Query: 393  tgatcaacatagactagcttccagtccattctgtacgggtcctcgagctggccttgaata 452
            ||||||||||||||||||||||| ||||| || || || || ||||| || ||||| |||
Sbjct: 3547 tgatcaacatagactagcttccaatccatcctatatggatcttcgagttgaccttggata 3488

                                                                        
Query: 453  ccaaacatgcatgcaagatcatgccgtagttcatcataatttgtataccgtgtgatgtcg 512
            |||||||||||||||||||||||||  ||||||||||||| |  ||| | |||||| || 
Sbjct: 3487 ccaaacatgcatgcaagatcatgcctaagttcatcataatctcgatatcttgtgatatca 3428

                                                                        
Query: 513  attgatcgccccacggatccacgcttttgaacctttgtgaaagttctcatccgctgtgtt 572
            ||||||| |||||| || ||||||||||||||||| ||||||||||||||||| ||||||
Sbjct: 3427 attgatctccccacagaaccacgcttttgaaccttagtgaaagttctcatccgttgtgtt 3368

                                            
Query: 573  tgattattccacaatccttggcttggcattcc 604
            |||||||||||||| |||||||||||||||||
Sbjct: 3367 tgattattccacaaaccttggcttggcattcc 3336



 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 42   aaggcggttcactgaacatc 61
            ||||||||||||||||||||
Sbjct: 3888 aaggcggttcactgaacatc 3869
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score =  153 bits (77), Expect = 8e-34
 Identities = 122/137 (89%)
 Strand = Plus / Minus

                                                                           
Query: 213     cctctccatgcatttgcatcatcggatgcgctacaggcttgtgtttgtggagggataccg 272
               ||||||||||||||||||||||| || || |||||||| ||||||||||||||||  || 
Sbjct: 4942990 cctctccatgcatttgcatcatcagaggcactacaggcctgtgtttgtggagggacgcca 4942931

                                                                           
Query: 273     ccaaggtcgccatccaaactcatctgttgcacttcaacagatgataatattttgatgctc 332
               |||||||| |||||||| ||||||||||| |||||| ||| ||| | |||||||||||||
Sbjct: 4942930 ccaaggtcaccatccaagctcatctgttgtacttcagcagctgagagtattttgatgctc 4942871

                                
Query: 333     ttcacacagctcacaaa 349
               |||||||||| ||||||
Sbjct: 4942870 ttcacacagcccacaaa 4942854



 Score =  149 bits (75), Expect = 1e-32
 Identities = 165/195 (84%)
 Strand = Plus / Minus

                                                                           
Query: 353     ctcccatgggtcatcaccaacaaggaggatgtcgttttcatgatcaacatagactagctt 412
               |||||| ||||| || || ||||| ||||| || || |||||||||||||||||||||||
Sbjct: 4942766 ctcccaagggtcgtcgccgacaagaaggatatcattctcatgatcaacatagactagctt 4942707

                                                                           
Query: 413     ccagtccattctgtacgggtcctcgagctggccttgaataccaaacatgcatgcaagatc 472
               ||| ||||| || || || || || || || ||||| |||||||||||||||||||||||
Sbjct: 4942706 ccaatccatcctatatggatcttcaagttgaccttggataccaaacatgcatgcaagatc 4942647

                                                                           
Query: 473     atgccgtagttcatcataatttgtataccgtgtgatgtcgattgatcgccccacggatcc 532
               |||||  ||||||||||||| |  ||| | |||||| || ||||||| |||||| || ||
Sbjct: 4942646 atgcctaagttcatcataatctcgatatcttgtgatatcaattgatctccccacagaacc 4942587

                              
Query: 533     acgcttttgaacctt 547
               |||||||||||||||
Sbjct: 4942586 acgcttttgaacctt 4942572



 Score =  101 bits (51), Expect = 3e-18
 Identities = 60/63 (95%)
 Strand = Plus / Minus

                                                                           
Query: 542     aacctttgtgaaagttctcatccgctgtgtttgattattccacaatccttggcttggcat 601
               |||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct: 4941877 aaccttagtgaaagttctcatccgttgtgtttgattattccacaaaccttggcttggcat 4941818

                  
Query: 602     tcc 604
               |||
Sbjct: 4941817 tcc 4941815



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 39/45 (86%)
 Strand = Plus / Minus

                                                             
Query: 353      ctcccatgggtcatcaccaacaaggaggatgtcgttttcatgatc 397
                |||||||||||| || |||| ||| |||||||| | |||||||||
Sbjct: 29148530 ctcccatgggtcgtcgccaagaagtaggatgtcatcttcatgatc 29148486



 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 42      aaggcggttcactgaacatc 61
               ||||||||||||||||||||
Sbjct: 4943151 aaggcggttcactgaacatc 4943132
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>dbj|AP003510.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0528E04
          Length = 170701

 Score =  153 bits (77), Expect = 8e-34
 Identities = 122/137 (89%)
 Strand = Plus / Minus

                                                                          
Query: 213    cctctccatgcatttgcatcatcggatgcgctacaggcttgtgtttgtggagggataccg 272
              ||||||||||||||||||||||| || || |||||||| ||||||||||||||||  || 
Sbjct: 130473 cctctccatgcatttgcatcatcagaggcactacaggcctgtgtttgtggagggacgcca 130414

                                                                          
Query: 273    ccaaggtcgccatccaaactcatctgttgcacttcaacagatgataatattttgatgctc 332
              |||||||| |||||||| ||||||||||| |||||| ||| ||| | |||||||||||||
Sbjct: 130413 ccaaggtcaccatccaagctcatctgttgtacttcagcagctgagagtattttgatgctc 130354

                               
Query: 333    ttcacacagctcacaaa 349
              |||||||||| ||||||
Sbjct: 130353 ttcacacagcccacaaa 130337



 Score =  149 bits (75), Expect = 1e-32
 Identities = 165/195 (84%)
 Strand = Plus / Minus

                                                                          
Query: 353    ctcccatgggtcatcaccaacaaggaggatgtcgttttcatgatcaacatagactagctt 412
              |||||| ||||| || || ||||| ||||| || || |||||||||||||||||||||||
Sbjct: 130249 ctcccaagggtcgtcgccgacaagaaggatatcattctcatgatcaacatagactagctt 130190

                                                                          
Query: 413    ccagtccattctgtacgggtcctcgagctggccttgaataccaaacatgcatgcaagatc 472
              ||| ||||| || || || || || || || ||||| |||||||||||||||||||||||
Sbjct: 130189 ccaatccatcctatatggatcttcaagttgaccttggataccaaacatgcatgcaagatc 130130

                                                                          
Query: 473    atgccgtagttcatcataatttgtataccgtgtgatgtcgattgatcgccccacggatcc 532
              |||||  ||||||||||||| |  ||| | |||||| || ||||||| |||||| || ||
Sbjct: 130129 atgcctaagttcatcataatctcgatatcttgtgatatcaattgatctccccacagaacc 130070

                             
Query: 533    acgcttttgaacctt 547
              |||||||||||||||
Sbjct: 130069 acgcttttgaacctt 130055



 Score =  101 bits (51), Expect = 3e-18
 Identities = 60/63 (95%)
 Strand = Plus / Minus

                                                                          
Query: 542    aacctttgtgaaagttctcatccgctgtgtttgattattccacaatccttggcttggcat 601
              |||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct: 129360 aaccttagtgaaagttctcatccgttgtgtttgattattccacaaaccttggcttggcat 129301

                 
Query: 602    tcc 604
              |||
Sbjct: 129300 tcc 129298



 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 42     aaggcggttcactgaacatc 61
              ||||||||||||||||||||
Sbjct: 130634 aaggcggttcactgaacatc 130615
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>ref|XM_464101.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3420

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 47/50 (94%)
 Strand = Plus / Minus

                                                              
Query: 336  acacagctcacaaactcctcccatgggtcatcaccaacaaggaggatgtc 385
            |||||| |||||||||||||||||||||||||||||| ||| ||||||||
Sbjct: 3239 acacagttcacaaactcctcccatgggtcatcaccaagaagcaggatgtc 3190
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>dbj|AB112671.1| Cucumis sativus CsARF1 mRNA for auxin response factor 1, complete cds
          Length = 4730

 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 100/121 (82%)
 Strand = Plus / Minus

                                                                        
Query: 283  catccaaactcatctgttgcacttcaacagatgataatattttgatgctcttcacacagc 342
            |||||||||||||||| || |||||| | ||||| |  || || |||||||  |||||||
Sbjct: 4056 catccaaactcatctgctgtacttcagcggatgacaggatctttatgctctgaacacagc 3997

                                                                        
Query: 343  tcacaaactcctcccatgggtcatcaccaacaaggaggatgtcgttttcatgatcaacat 402
            |||||||||| ||||| || ||||||||||| || || || || |||||||| || ||||
Sbjct: 3996 tcacaaactcatcccaaggatcatcaccaactagaagtatatcattttcatggtccacat 3937

             
Query: 403  a 403
            |
Sbjct: 3936 a 3936



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                         
Query: 522  cccacggatccacgcttttgaacctttgt 550
            ||||| |||||||||||||||||||||||
Sbjct: 3817 cccactgatccacgcttttgaacctttgt 3789
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>gb|AC144483.10| Medicago truncatula clone mth2-12f13, complete sequence
          Length = 105599

 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 58/66 (87%)
 Strand = Plus / Plus

                                                                         
Query: 353   ctcccatgggtcatcaccaacaaggaggatgtcgttttcatgatcaacatagactagctt 412
             |||||| || |||||||||||||| || ||||| ||||||||||| ||||| |||| |||
Sbjct: 48316 ctcccaaggatcatcaccaacaagaagaatgtcattttcatgatccacatatactaactt 48375

                   
Query: 413   ccagtc 418
             ||||||
Sbjct: 48376 ccagtc 48381



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                      
Query: 282   ccatccaaactcatctgttgcacttcaacagatgataatat 322
             |||||||||||||| || ||||| ||| ||||||| |||||
Sbjct: 48156 ccatccaaactcatttgctgcacctcagcagatgacaatat 48196
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>gb|AY105182.1| Zea mays PCO117620 mRNA sequence
          Length = 671

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 49/55 (89%)
 Strand = Plus / Minus

                                                                  
Query: 327 atgctcttcacacagctcacaaactcctcccatgggtcatcaccaacaaggagga 381
           |||| |||||||||  |||||||||||||||||||||| ||||||| ||| ||||
Sbjct: 82  atgcacttcacacaattcacaaactcctcccatgggtcgtcaccaagaagtagga 28
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>dbj|AP004472.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT17P02, TM0006,
             complete sequence
          Length = 72374

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 46/51 (90%)
 Strand = Plus / Minus

                                                                
Query: 353   ctcccatgggtcatcaccaacaaggaggatgtcgttttcatgatcaacata 403
             |||||| ||||||||||||||||| || ||||| ||||||||||| |||||
Sbjct: 60162 ctcccaagggtcatcaccaacaagaagaatgtcattttcatgatctacata 60112
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>gb|AY008392.1| Arabidopsis thaliana ARF7 (ARF7) gene, complete cds
          Length = 7703

 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 57/66 (86%)
 Strand = Plus / Minus

                                                                        
Query: 353  ctcccatgggtcatcaccaacaaggaggatgtcgttttcatgatcaacatagactagctt 412
            ||||||||| ||||| || || ||||||||||| ||||||||||| ||||| || || ||
Sbjct: 6833 ctcccatggatcatcgccgacgaggaggatgtcattttcatgatcgacataaacaagttt 6774

                  
Query: 413  ccagtc 418
            ||||||
Sbjct: 6773 ccagtc 6768
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>gb|AF296832.1|T1M15 Arabidopsis thaliana BAC T1M15
          Length = 89490

 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 57/66 (86%)
 Strand = Plus / Plus

                                                                         
Query: 353   ctcccatgggtcatcaccaacaaggaggatgtcgttttcatgatcaacatagactagctt 412
             ||||||||| ||||| || || ||||||||||| ||||||||||| ||||| || || ||
Sbjct: 49953 ctcccatggatcatcgccgacgaggaggatgtcattttcatgatcgacataaacaagttt 50012

                   
Query: 413   ccagtc 418
             ||||||
Sbjct: 50013 ccagtc 50018
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>gb|AF186466.1|AF186466 Arabidopsis thaliana non-phototropic hypocotyl 4 (NPH4) gene,
            complete cds
          Length = 7317

 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 57/66 (86%)
 Strand = Plus / Minus

                                                                        
Query: 353  ctcccatgggtcatcaccaacaaggaggatgtcgttttcatgatcaacatagactagctt 412
            ||||||||| ||||| || || ||||||||||| ||||||||||| ||||| || || ||
Sbjct: 6828 ctcccatggatcatcgccgacgaggaggatgtcattttcatgatcgacataaacaagttt 6769

                  
Query: 413  ccagtc 418
            ||||||
Sbjct: 6768 ccagtc 6763
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>ref|NM_122080.2| Arabidopsis thaliana NPH4 (NON-PHOTOTROPHIC HYPOCOTYL); transcription
            factor AT5G20730 (NPH4) transcript variant AT5G20730.3
            mRNA, complete cds
          Length = 4296

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 56/65 (86%)
 Strand = Plus / Minus

                                                                        
Query: 354  tcccatgggtcatcaccaacaaggaggatgtcgttttcatgatcaacatagactagcttc 413
            |||||||| ||||| || || ||||||||||| ||||||||||| ||||| || || |||
Sbjct: 3926 tcccatggatcatcgccgacgaggaggatgtcattttcatgatcgacataaacaagtttc 3867

                 
Query: 414  cagtc 418
            |||||
Sbjct: 3866 cagtc 3862
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>ref|NM_180715.1| Arabidopsis thaliana NPH4 (NON-PHOTOTROPHIC HYPOCOTYL); transcription
            factor AT5G20730 (NPH4) transcript variant AT5G20730.1
            mRNA, complete cds
          Length = 4341

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 56/65 (86%)
 Strand = Plus / Minus

                                                                        
Query: 354  tcccatgggtcatcaccaacaaggaggatgtcgttttcatgatcaacatagactagcttc 413
            |||||||| ||||| || || ||||||||||| ||||||||||| ||||| || || |||
Sbjct: 3926 tcccatggatcatcgccgacgaggaggatgtcattttcatgatcgacataaacaagtttc 3867

                 
Query: 414  cagtc 418
            |||||
Sbjct: 3866 cagtc 3862
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>ref|NM_180716.1| Arabidopsis thaliana NPH4 (NON-PHOTOTROPHIC HYPOCOTYL); transcription
            factor AT5G20730 (NPH4) transcript variant AT5G20730.2
            mRNA, complete cds
          Length = 4557

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 56/65 (86%)
 Strand = Plus / Minus

                                                                        
Query: 354  tcccatgggtcatcaccaacaaggaggatgtcgttttcatgatcaacatagactagcttc 413
            |||||||| ||||| || || ||||||||||| ||||||||||| ||||| || || |||
Sbjct: 3852 tcccatggatcatcgccgacgaggaggatgtcattttcatgatcgacataaacaagtttc 3793

                 
Query: 414  cagtc 418
            |||||
Sbjct: 3792 cagtc 3788
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>gb|AY080595.1| Arabidopsis thaliana unknown protein (At5g20730) mRNA, partial cds
          Length = 3413

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 56/65 (86%)
 Strand = Plus / Minus

                                                                        
Query: 354  tcccatgggtcatcaccaacaaggaggatgtcgttttcatgatcaacatagactagcttc 413
            |||||||| ||||| || || ||||||||||| ||||||||||| ||||| || || |||
Sbjct: 2957 tcccatggatcatcgccgacgaggaggatgtcattttcatgatcgacataaacaagtttc 2898

                 
Query: 414  cagtc 418
            |||||
Sbjct: 2897 cagtc 2893
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>gb|AF042195.1|AF042195 Arabidopsis thaliana auxin response factor 7 (ARF7) mRNA, complete
            cds
          Length = 4044

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 56/65 (86%)
 Strand = Plus / Minus

                                                                        
Query: 354  tcccatgggtcatcaccaacaaggaggatgtcgttttcatgatcaacatagactagcttc 413
            |||||||| ||||| || || ||||||||||| ||||||||||| ||||| || || |||
Sbjct: 3852 tcccatggatcatcgccgacgaggaggatgtcattttcatgatcgacataaacaagtttc 3793

                 
Query: 414  cagtc 418
            |||||
Sbjct: 3792 cagtc 3788
to top
>gb|AF022368.1|AF022368 Arabidopsis thaliana BIPOSTO (BIP) mRNA, complete cds
          Length = 4341

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 56/65 (86%)
 Strand = Plus / Minus

                                                                        
Query: 354  tcccatgggtcatcaccaacaaggaggatgtcgttttcatgatcaacatagactagcttc 413
            |||||||| ||||| || || ||||||||||| ||||||||||| ||||| || || |||
Sbjct: 3926 tcccatggatcatcgccgacgaggaggatgtcattttcatgatcgacataaacaagtttc 3867

                 
Query: 414  cagtc 418
            |||||
Sbjct: 3866 cagtc 3862
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>gb|AY669789.1| Arabidopsis thaliana clone C105344 ARF7 (At5g20730) mRNA, complete
            cds
          Length = 3526

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 56/65 (86%)
 Strand = Plus / Minus

                                                                        
Query: 354  tcccatgggtcatcaccaacaaggaggatgtcgttttcatgatcaacatagactagcttc 413
            |||||||| ||||| || || ||||||||||| ||||||||||| ||||| || || |||
Sbjct: 3314 tcccatggatcatcgccgacgaggaggatgtcattttcatgatcgacataaacaagtttc 3255

                 
Query: 414  cagtc 418
            |||||
Sbjct: 3254 cagtc 3250
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>gb|U79556.1|U79556 Arabidopsis thaliana IAA25 (IAA25) mRNA, partial cds
          Length = 1631

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 56/65 (86%)
 Strand = Plus / Minus

                                                                        
Query: 354  tcccatgggtcatcaccaacaaggaggatgtcgttttcatgatcaacatagactagcttc 413
            |||||||| ||||| || || ||||||||||| ||||||||||| ||||| || || |||
Sbjct: 1250 tcccatggatcatcgccgacgaggaggatgtcattttcatgatcgacataaacaagtttc 1191

                 
Query: 414  cagtc 418
            |||||
Sbjct: 1190 cagtc 1186
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>gb|U79555.1|U79555 Arabidopsis thaliana IAA23 (IAA23) mRNA, partial cds
          Length = 1935

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 56/65 (86%)
 Strand = Plus / Minus

                                                                        
Query: 354  tcccatgggtcatcaccaacaaggaggatgtcgttttcatgatcaacatagactagcttc 413
            |||||||| ||||| || || ||||||||||| ||||||||||| ||||| || || |||
Sbjct: 1640 tcccatggatcatcgccgacgaggaggatgtcattttcatgatcgacataaacaagtttc 1581

                 
Query: 414  cagtc 418
            |||||
Sbjct: 1580 cagtc 1576
to top
>gb|U49077.1|ATU49077 Arabidopsis thaliana early auxin-induced (IAA21) mRNA, partial cds
          Length = 1311

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 56/65 (86%)
 Strand = Plus / Minus

                                                                       
Query: 354 tcccatgggtcatcaccaacaaggaggatgtcgttttcatgatcaacatagactagcttc 413
           |||||||| ||||| || || ||||||||||| ||||||||||| ||||| || || |||
Sbjct: 966 tcccatggatcatcgccgacgaggaggatgtcattttcatgatcgacataaacaagtttc 907

                
Query: 414 cagtc 418
           |||||
Sbjct: 906 cagtc 902
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>gb|DQ153984.1| Gossypium arboreum auxin response factor 2 (ARF2) mRNA, complete cds
          Length = 3723

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 59/70 (84%)
 Strand = Plus / Minus

                                                                        
Query: 347  aaactcctcccatgggtcatcaccaacaaggaggatgtcgttttcatgatcaacatagac 406
            ||||||||||||||||||||| || || || || |  ||||| || ||||| ||||||||
Sbjct: 3283 aaactcctcccatgggtcatctcctactagcagaacatcgttctcgtgatccacatagac 3224

                      
Query: 407  tagcttccag 416
            ||| ||||||
Sbjct: 3223 tagtttccag 3214
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                                
Query: 353     ctcccatgggtcatcaccaacaaggaggatgtc 385
               |||||||||||||||||||| ||| ||||||||
Sbjct: 2208483 ctcccatgggtcatcaccaagaagcaggatgtc 2208515



 Score = 44.1 bits (22), Expect = 0.53
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                         
Query: 282     ccatccaaactcatctgttgcacttc 307
               |||||||| |||||||||||||||||
Sbjct: 2208148 ccatccaagctcatctgttgcacttc 2208173
to top
>dbj|AP005294.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1679_B08
          Length = 142529

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                               
Query: 353    ctcccatgggtcatcaccaacaaggaggatgtc 385
              |||||||||||||||||||| ||| ||||||||
Sbjct: 123176 ctcccatgggtcatcaccaagaagcaggatgtc 123208



 Score = 44.1 bits (22), Expect = 0.53
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 282    ccatccaaactcatctgttgcacttc 307
              |||||||| |||||||||||||||||
Sbjct: 122841 ccatccaagctcatctgttgcacttc 122866
to top
>dbj|AK103312.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033125G19, full
            insert sequence
          Length = 3550

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 46/53 (86%)
 Strand = Plus / Minus

                                                                 
Query: 345  acaaactcctcccatgggtcatcaccaacaaggaggatgtcgttttcatgatc 397
            ||||| |||||||||||||| || |||| ||| |||||||| | |||||||||
Sbjct: 3094 acaaattcctcccatgggtcgtcgccaagaagtaggatgtcatcttcatgatc 3042
to top
>dbj|AB071296.1| Oryza sativa OsARF7a mRNA for auxin response factor 7a, partial cds
          Length = 3372

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 46/53 (86%)
 Strand = Plus / Minus

                                                                 
Query: 345  acaaactcctcccatgggtcatcaccaacaaggaggatgtcgttttcatgatc 397
            ||||| |||||||||||||| || |||| ||| |||||||| | |||||||||
Sbjct: 3179 acaaattcctcccatgggtcgtcgccaagaagtaggatgtcatcttcatgatc 3127
to top
>gb|U53672.2|ATU53672 Arabidopsis thaliana early auxin-induced IAA22 mRNA, complete cds
          Length = 3807

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 59/71 (83%)
 Strand = Plus / Minus

                                                                        
Query: 303  acttcaacagatgataatattttgatgctcttcacacagctcacaaactcctcccatggg 362
            ||||| || ||||||| ||| || ||| ||| ||| ||| |||||||||| ||||| || 
Sbjct: 3346 acttctactgatgatagtatctttatgttctgcacgcagttcacaaactcttcccaagga 3287

                       
Query: 363  tcatcaccaac 373
            |||||||||||
Sbjct: 3286 tcatcaccaac 3276
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>ref|NM_101780.1| Arabidopsis thaliana ARF19; transcription factor AT1G19220 (ARF19)
            mRNA, complete cds
          Length = 3588

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 59/71 (83%)
 Strand = Plus / Minus

                                                                        
Query: 303  acttcaacagatgataatattttgatgctcttcacacagctcacaaactcctcccatggg 362
            ||||| || ||||||| ||| || ||| ||| ||| ||| |||||||||| ||||| || 
Sbjct: 3128 acttctactgatgatagtatctttatgttctgcacgcagttcacaaactcttcccaagga 3069

                       
Query: 363  tcatcaccaac 373
            |||||||||||
Sbjct: 3068 tcatcaccaac 3058
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>ref|XM_483368.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3342

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                           
Query: 343  tcacaaactcctcccatgggtcatcaccaac 373
            ||||||| ||||||||||| |||||||||||
Sbjct: 3199 tcacaaagtcctcccatggatcatcaccaac 3169
to top
>gb|AC107206.4| Oryza sativa chromosome 3 BAC OSJNBa0063J18 genomic sequence, complete
             sequence
          Length = 154558

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 386   gttttcatgatcaacatagacta 408
             |||||||||||||||||||||||
Sbjct: 21646 gttttcatgatcaacatagacta 21668
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                       
Query: 386      gttttcatgatcaacatagacta 408
                |||||||||||||||||||||||
Sbjct: 23185165 gttttcatgatcaacatagacta 23185187
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                       
Query: 386      gttttcatgatcaacatagacta 408
                |||||||||||||||||||||||
Sbjct: 23178193 gttttcatgatcaacatagacta 23178215
to top
>emb|AJ441312.1|ATH441312 Arabidopsis thaliana mRNA for early auxin-induced protein 22 (iaa22
           gene)
          Length = 837

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 59/71 (83%)
 Strand = Plus / Minus

                                                                       
Query: 303 acttcaacagatgataatattttgatgctcttcacacagctcacaaactcctcccatggg 362
           ||||| || ||||||| ||| || ||| ||| ||| ||| |||||||||| ||||| || 
Sbjct: 704 acttctactgatgatagtatctttatgttctgcacgcagttcacaaactcttcccaagga 645

                      
Query: 363 tcatcaccaac 373
           |||||||||||
Sbjct: 644 tcatcaccaac 634
to top
>gb|AY110307.1| Zea mays CL18202_1 mRNA sequence
          Length = 655

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 351 tcctcccatgggtcatcaccaac 373
           |||||||||||||||||||||||
Sbjct: 470 tcctcccatgggtcatcaccaac 492
to top
>gb|AY669794.1| Arabidopsis thaliana clone C105352 ARF19 (At1g19220) mRNA, complete
            cds
          Length = 3292

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 59/71 (83%)
 Strand = Plus / Minus

                                                                        
Query: 303  acttcaacagatgataatattttgatgctcttcacacagctcacaaactcctcccatggg 362
            ||||| || ||||||| ||| || ||| ||| ||| ||| |||||||||| ||||| || 
Sbjct: 3128 acttctactgatgatagtatctttatgttctgcacgcagttcacaaactcttcccaagga 3069

                       
Query: 363  tcatcaccaac 373
            |||||||||||
Sbjct: 3068 tcatcaccaac 3058
to top
>gb|DQ323908.1| Glycine max myo-inositol-1-phosphate synthase (MIPS4) gene, complete
            cds
          Length = 4748

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                           
Query: 164  ctttaaataatggtaagaagcacattaaatt 194
            ||||||||||||||||| | |||||||||||
Sbjct: 4350 ctttaaataatggtaaggaccacattaaatt 4380
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>dbj|AB071297.1| Oryza sativa OsARF7b mRNA for auxin response factor 7b, partial cds
          Length = 3291

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                           
Query: 343  tcacaaactcctcccatgggtcatcaccaac 373
            ||||||| ||||||||||| |||||||||||
Sbjct: 3148 tcacaaagtcctcccatggatcatcaccaac 3118
to top
>emb|BX908780.7| Zebrafish DNA sequence from clone CH211-198K9 in linkage group 1,
              complete sequence
          Length = 199679

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 447    tgaataccaaacatgcatgcaa 468
              ||||||||||||||||||||||
Sbjct: 176406 tgaataccaaacatgcatgcaa 176427
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>emb|CR385085.9| Zebrafish DNA sequence from clone CH211-195A16, complete sequence
          Length = 211060

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 559    tcatccgctgtgtttgattatt 580
              ||||||||||||||||||||||
Sbjct: 186388 tcatccgctgtgtttgattatt 186367
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 387     ttttcatgatcaacatagacta 408
               ||||||||||||||||||||||
Sbjct: 9803083 ttttcatgatcaacatagacta 9803104
to top
>dbj|AP001072.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0025D05
          Length = 145684

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 387   ttttcatgatcaacatagacta 408
             ||||||||||||||||||||||
Sbjct: 67333 ttttcatgatcaacatagacta 67354
to top
>emb|BX005463.5| Zebrafish DNA sequence from clone CH211-177H19 in linkage group 6,
             complete sequence
          Length = 163804

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 559   tcatccgctgtgtttgattatt 580
             ||||||||||||||||||||||
Sbjct: 24857 tcatccgctgtgtttgattatt 24878
to top
>gb|AE008450.1| Streptococcus pneumoniae R6 section 66 of 184 of the complete
          genome
          Length = 11107

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                               
Query: 72 agcatttgaccaattttgtca 92
          |||||||||||||||||||||
Sbjct: 79 agcatttgaccaattttgtca 59
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>gb|AE005672.2| Streptococcus pneumoniae TIGR4, complete genome
          Length = 2160842

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 72     agcatttgaccaattttgtca 92
              |||||||||||||||||||||
Sbjct: 780171 agcatttgaccaattttgtca 780151
to top
>dbj|AP003726.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0596H10
          Length = 166570

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 39/45 (86%)
 Strand = Plus / Minus

                                                           
Query: 353    ctcccatgggtcatcaccaacaaggaggatgtcgttttcatgatc 397
              |||||||||||| || |||| ||| |||||||| | |||||||||
Sbjct: 163517 ctcccatgggtcgtcgccaagaagtaggatgtcatcttcatgatc 163473
to top
>dbj|AP004324.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OJ1215_E11
          Length = 105301

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 39/45 (86%)
 Strand = Plus / Minus

                                                          
Query: 353   ctcccatgggtcatcaccaacaaggaggatgtcgttttcatgatc 397
             |||||||||||| || |||| ||| |||||||| | |||||||||
Sbjct: 15817 ctcccatgggtcgtcgccaagaagtaggatgtcatcttcatgatc 15773
to top
>gb|AF052208.1|AF052208 Streptococcus pneumoniae competence protein (celA) and competence
            protein (celB) genes, complete cds; and unknown gene
          Length = 3846

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 72   agcatttgaccaattttgtca 92
            |||||||||||||||||||||
Sbjct: 3153 agcatttgaccaattttgtca 3173
to top
>ref|NM_123060.2| Arabidopsis thaliana ARF8 (AUXIN RESPONSE FACTOR 8); transcription
            factor AT5G37020 (ARF8) mRNA, complete cds
          Length = 2840

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 353  ctcccatgggtcatcaccaa 372
            ||||||||||||||||||||
Sbjct: 2442 ctcccatgggtcatcaccaa 2423
to top
>gb|AC113041.9| Mus musculus chromosome 8, clone RP23-240K12, complete sequence
          Length = 175827

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 184    cacattaaatttagtattta 203
              ||||||||||||||||||||
Sbjct: 136822 cacattaaatttagtattta 136803
to top
>gb|AC169702.1| Rhesus Macaque  BAC CH250-107F18 (Children's Hospital Oakland Research
             Institute Rhesus macaque Adult Male BAC Library) complete
             sequence
          Length = 157010

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 158   gtatttctttaaataatggt 177
             ||||||||||||||||||||
Sbjct: 29370 gtatttctttaaataatggt 29351
to top
>gb|AC186553.1| Pan troglodytes chromosome 6 clone CH251-664D19, complete sequence
          Length = 214787

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 448   gaataccaaacatgcatgca 467
             ||||||||||||||||||||
Sbjct: 54449 gaataccaaacatgcatgca 54430
to top
>gb|AC183596.2| Pan troglodytes BAC clone CH251-679I13 from chromosome 6, complete
             sequence
          Length = 214528

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 448   gaataccaaacatgcatgca 467
             ||||||||||||||||||||
Sbjct: 71604 gaataccaaacatgcatgca 71623
to top
>ref|XM_722297.1| Plasmodium yoelii yoelii str. 17XNL aspartyl protease (PY06692)
           partial mRNA
          Length = 1668

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 317 taatattttgatgctcttca 336
           ||||||||||||||||||||
Sbjct: 21  taatattttgatgctcttca 2
to top
>gb|AC113085.6| Mus musculus chromosome 8, clone RP23-292P21, complete sequence
          Length = 211723

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 184    cacattaaatttagtattta 203
              ||||||||||||||||||||
Sbjct: 184793 cacattaaatttagtattta 184812
to top
>gb|AC164009.3| Mus musculus chromosome 18, clone RP24-362C21, complete sequence
          Length = 134903

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 567   tgtgtttgattattccacaatcct 590
             |||||||||||||| |||||||||
Sbjct: 15608 tgtgtttgattattgcacaatcct 15631
to top
>gb|AC182732.2| Pan troglodytes BAC clone CH251-716H13 from chromosome 6, complete
             sequence
          Length = 172310

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 448   gaataccaaacatgcatgca 467
             ||||||||||||||||||||
Sbjct: 35563 gaataccaaacatgcatgca 35544
to top
>gb|AC182399.3| Pan troglodytes BAC clone CH251-19C24 from chromosome 6, complete
              sequence
          Length = 226479

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 448    gaataccaaacatgcatgca 467
              ||||||||||||||||||||
Sbjct: 129108 gaataccaaacatgcatgca 129127
to top
>gb|AC092237.1|AC092237 Drosophila melanogaster, chromosome 2L, region 31C-31D, BAC clone
             BACR30M19, complete sequence
          Length = 154779

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 162   ttctttaaataatggtaaga 181
             ||||||||||||||||||||
Sbjct: 72075 ttctttaaataatggtaaga 72094
to top
>gb|AC073528.26|AC073528 Homo sapiens 12 BAC RP11-8P16 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 167041

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 181    aagcacattaaatttagtat 200
              ||||||||||||||||||||
Sbjct: 121737 aagcacattaaatttagtat 121718
to top
>gb|AC017007.9| Homo sapiens BAC clone RP11-119H12 from 4, complete sequence
          Length = 182805

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 162    ttctttaaataatggtaaga 181
              ||||||||||||||||||||
Sbjct: 179513 ttctttaaataatggtaaga 179532
to top
>gb|AC073907.25| Homo sapiens 12 BAC RP11-202G24 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 135245

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 181    aagcacattaaatttagtat 200
              ||||||||||||||||||||
Sbjct: 113272 aagcacattaaatttagtat 113291
to top
>dbj|AB024026.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K15O15
          Length = 23026

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 353   ctcccatgggtcatcaccaa 372
             ||||||||||||||||||||
Sbjct: 18789 ctcccatgggtcatcaccaa 18770
to top
>gb|AF042196.1|AF042196 Arabidopsis thaliana auxin response factor 8 (ARF8) mRNA, complete
            cds
          Length = 2817

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 353  ctcccatgggtcatcaccaa 372
            ||||||||||||||||||||
Sbjct: 2442 ctcccatgggtcatcaccaa 2423
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>gb|AE003628.2| Drosophila melanogaster chromosome 2L, section 37 of 83 of the complete
             sequence
          Length = 269102

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 162   ttctttaaataatggtaaga 181
             ||||||||||||||||||||
Sbjct: 91324 ttctttaaataatggtaaga 91305
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>gb|AY669790.1| Arabidopsis thaliana clone C105345 ARF8 (At5g37020) mRNA, complete
            cds
          Length = 2467

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 353  ctcccatgggtcatcaccaa 372
            ||||||||||||||||||||
Sbjct: 2319 ctcccatgggtcatcaccaa 2300
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>gb|AC005454.1|AC005454 Drosophila melanogaster, chromosome 2R, region 31C1-31D6, P1 clone
             DS08879, complete sequence
          Length = 84367

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 162   ttctttaaataatggtaaga 181
             ||||||||||||||||||||
Sbjct: 72976 ttctttaaataatggtaaga 72957
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>emb|AL772135.14| Mouse DNA sequence from clone RP23-162G11 on chromosome 2, complete
             sequence
          Length = 230161

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 306   tcaacagatgataatatttt 325
             ||||||||||||||||||||
Sbjct: 36993 tcaacagatgataatatttt 36974


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,670,577
Number of Sequences: 3902068
Number of extensions: 5670577
Number of successful extensions: 124362
Number of sequences better than 10.0: 67
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 123992
Number of HSP's gapped (non-prelim): 369
length of query: 606
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 583
effective length of database: 17,143,297,704
effective search space: 9994542561432
effective search space used: 9994542561432
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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