>RK25_PEA (P11892) 50S ribosomal protein CL25, chloroplast precursor|
          Length = 104

 Score = 49.7 bits (117), Expect = 2e-06
 Identities = 21/39 (53%), Positives = 28/39 (71%)
 Frame = -1

Query: 327 EGTKHHMKTRPKKTQRWDIKRRPIQYEPLPALPDDWTLV 211
           + T HHMKTRP+K++  D  R+P  Y PLP LP D+T+V
Sbjct: 47  KSTAHHMKTRPRKSRLSDRNRKPTVYAPLPPLPPDFTIV 85

>PGCA_RAT (P07897) Aggrecan core protein precursor (Cartilage-specific|
           proteoglycan core protein) (CSPCP)
          Length = 2124

 Score = 35.0 bits (79), Expect = 0.047
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = -1

Query: 312 HMKTRPKKTQRWDIKRRPIQYEPLPALPDDW-TLVAAGEKEDESP 181
           +  T P+K   W+    P+   PLP +P  W   V A E+  ESP
Sbjct: 728 YFTTEPEKQTEWEPAYTPVGTSPLPGIPPTWLPTVPAAEEHTESP 772

>PGCA_MOUSE (Q61282) Aggrecan core protein precursor (Cartilage-specific|
           proteoglycan core protein) (CSPCP)
          Length = 2132

 Score = 32.0 bits (71), Expect = 0.40
 Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = -1

Query: 312 HMKTRPKKTQRWDIKRRPIQYEPLPALPDDW-TLVAAGEKEDESP 181
           +  T P+K   W+    P+   P P +P  W   + A E+  ESP
Sbjct: 732 YFTTEPRKQTEWEPAYTPVGTSPQPGIPPTWLPTLPAAEEHTESP 776

>PHC2_HUMAN (Q8IXK0) Polyhomeotic-like protein 2 (hPH2) (Early development|
           regulatory protein 2)
          Length = 858

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = -1

Query: 327 EGTKHHMKTRPKKTQRWDIKRRPIQYEPLPALPDDWTLVAAGEK 196
           EG  H  + R + T    ++ +P    P   +PDDW  VA GEK
Sbjct: 438 EGVPHTPQRRFQHTSAVILQLQPAS-PPQQCVPDDWKEVAPGEK 480

>SECU_YEAST (P40316) Securin|
          Length = 373

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
 Frame = -1

Query: 321 TKHHMKTR---PKKTQRWDIKRRPIQYEPLPALPDDWT 217
           TK+  KT+     KT  +DI+  P + EPLP +P+ ++
Sbjct: 240 TKNEQKTKNDKSDKTDDYDIEIAPQRQEPLPYVPEGYS 277

>YAAJ_ECOLI (P30143) Putative transporter yaaJ|
          Length = 476

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 11/25 (44%), Positives = 19/25 (76%)
 Frame = -2

Query: 89  SSLYFISLNSPHAGFCLRLFTAVTL 15
           ++L+F+ LN+P A +CLR+ T  T+
Sbjct: 373 NNLFFLRLNNPKAIWCLRICTFATV 397

>SIN3B_MOUSE (Q62141) Paired amphipathic helix protein Sin3b (Transcriptional|
           corepressor Sin3b) (Histone deacetylase complex subunit
           Sin3b)
          Length = 1098

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -3

Query: 268 APPHSIRAAAGASR*LDACSCRREG 194
           APP S R+  G SR +D  SC+R G
Sbjct: 365 APPMSDRSGDGISREIDYASCKRIG 389

>SIN3B_HUMAN (O75182) Paired amphipathic helix protein Sin3b (Transcriptional|
           corepressor Sin3b) (Histone deacetylase complex subunit
           Sin3b)
          Length = 1162

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -3

Query: 268 APPHSIRAAAGASR*LDACSCRREG 194
           APP S R+  G SR +D  SC+R G
Sbjct: 374 APPMSDRSGDGISREIDYASCKRIG 398

>PBPF_BACSU (P38050) Penicillin-binding protein 1F (PBP-1F)|
          Length = 714

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -1

Query: 324 GTKHHMKTRPKKTQRWDIKRRPIQYEPLPALPDDWTLVAAG 202
           G   H+ T+PK  +  +    PI+ +P+  L  D+T  AAG
Sbjct: 598 GETGHVFTKPKNVKELE---SPIELKPVKTLTADYTFKAAG 635

>PKCB1_HUMAN (Q9ULU4) Protein kinase C-binding protein 1 (Rack7) (Cutaneous|
           T-cell lymphoma associated antigen se14-3) (CTCL tumor
           antigen se14-3) (Zinc finger MYND domain containing
           protein 8)
          Length = 1186

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +3

Query: 168 SPHPAATHLPSRRQLQASSHREAPAAARIEWGGA 269
           +P PAAT  P ++Q        APA  R+ W  +
Sbjct: 789 APAPAATGSPVKKQRPLLPKETAPAVQRVVWNSS 822

>LTI78_ARATH (Q06738) Low-temperature-induced 78 kDa protein|
           (Desiccation-responsive protein 29A)
          Length = 710

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 313 PYEDAAQEDAAVGHQAPPHSIR 248
           P E    ++A+ GH AP HS+R
Sbjct: 112 PTESVPVQEASYGHDAPAHSVR 133


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,417,434
Number of Sequences: 219361
Number of extensions: 399364
Number of successful extensions: 1441
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1440
length of database: 80,573,946
effective HSP length: 84
effective length of database: 62,147,622
effective search space used: 1491542928
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)