Clone Name | rbasd20h03 |
---|---|
Clone Library Name | barley_pub |
>emb|X52472.1|TAPRP T.aestivum mRNA for a proline-rich protein Length = 1487 Score = 139 bits (70), Expect = 2e-30 Identities = 76/78 (97%) Strand = Plus / Minus Query: 23 aaaaagatgcatcatcactatctcgctagccggatactatgccacttattctggaaatag 82 |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| Sbjct: 1352 aaaaagatgcatcatcactatctcgctaaccggatactatgccacttattctagaaatag 1293 Query: 83 cacatcgtggctccggac 100 |||||||||||||||||| Sbjct: 1292 cacatcgtggctccggac 1275
>gb|AC162927.3| Mus musculus BAC clone RP23-269E12 from chromosome 9, complete sequence Length = 213948 Score = 42.1 bits (21), Expect = 0.28 Identities = 24/25 (96%) Strand = Plus / Minus Query: 2 gatggaatacaagggaatgcaaaaa 26 ||||||||||||||||||| ||||| Sbjct: 138904 gatggaatacaagggaatgaaaaaa 138880
>ref|NM_128263.3| Arabidopsis thaliana EIL1 (ETHYLENE-INSENSITIVE3-LIKE 1); transcription factor AT2G27050 (EIL1) mRNA, complete cds Length = 2224 Score = 38.2 bits (19), Expect = 4.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 28 gatgcatcatcactatctc 46 ||||||||||||||||||| Sbjct: 1313 gatgcatcatcactatctc 1295
>gb|AC087430.3| Homo sapiens chromosome 3 clone RP11-242C8 map 3p, complete sequence Length = 152289 Score = 38.2 bits (19), Expect = 4.4 Identities = 22/23 (95%) Strand = Plus / Minus Query: 11 caagggaatgcaaaaaagatgca 33 |||||||| |||||||||||||| Sbjct: 63831 caagggaaagcaaaaaagatgca 63809
>gb|AC154394.6| Mus musculus chromosome 18, clone RP23-315M1, complete sequence Length = 246033 Score = 38.2 bits (19), Expect = 4.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 23 aaaaagatgcatcatcact 41 ||||||||||||||||||| Sbjct: 194865 aaaaagatgcatcatcact 194847
>gb|AC104511.5| Drosophila melanogaster X BAC RP98-39D14 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 166000 Score = 38.2 bits (19), Expect = 4.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 8 atacaagggaatgcaaaaa 26 ||||||||||||||||||| Sbjct: 49225 atacaagggaatgcaaaaa 49243
>gb|AC023685.4| Drosophila melanogaster 3L BAC RP98-20N12 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 167926 Score = 38.2 bits (19), Expect = 4.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 8 atacaagggaatgcaaaaa 26 ||||||||||||||||||| Sbjct: 18652 atacaagggaatgcaaaaa 18634
>gb|AC005623.3| Arabidopsis thaliana chromosome 2 clone T20P8 map B68, complete sequence Length = 99345 Score = 38.2 bits (19), Expect = 4.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 28 gatgcatcatcactatctc 46 ||||||||||||||||||| Sbjct: 46857 gatgcatcatcactatctc 46839
>gb|AY065191.1| Arabidopsis thaliana ethylene-insensitive3-like1 (EIL1) (At2g27050; T20P8.10) mRNA, complete cds Length = 2076 Score = 38.2 bits (19), Expect = 4.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 28 gatgcatcatcactatctc 46 ||||||||||||||||||| Sbjct: 1196 gatgcatcatcactatctc 1178
>gb|DQ300284.2| Phaseolus vulgaris L-asparaginase 2 mRNA, complete cds Length = 981 Score = 38.2 bits (19), Expect = 4.4 Identities = 22/23 (95%) Strand = Plus / Plus Query: 1 tgatggaatacaagggaatgcaa 23 ||||||||||||||||| ||||| Sbjct: 791 tgatggaatacaagggactgcaa 813
>gb|AC109222.14| Mus musculus chromosome 18, clone RP23-251L6, complete sequence Length = 201310 Score = 38.2 bits (19), Expect = 4.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 23 aaaaagatgcatcatcact 41 ||||||||||||||||||| Sbjct: 19590 aaaaagatgcatcatcact 19572
>gb|BT003344.1| Arabidopsis thaliana ethylene-insensitive3-like1 (EIL1) (At2g27050) mRNA, complete cds Length = 1814 Score = 38.2 bits (19), Expect = 4.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 28 gatgcatcatcactatctc 46 ||||||||||||||||||| Sbjct: 1069 gatgcatcatcactatctc 1051
>gb|AE003491.4| Drosophila melanogaster chromosome X, section 43 of 74 of the complete sequence Length = 332030 Score = 38.2 bits (19), Expect = 4.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 8 atacaagggaatgcaaaaa 26 ||||||||||||||||||| Sbjct: 75337 atacaagggaatgcaaaaa 75319
>gb|AF004213.1|AF004213 Arabidopsis thaliana ethylene-insensitive3-like1 (EIL1) mRNA, complete cds Length = 2225 Score = 38.2 bits (19), Expect = 4.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 28 gatgcatcatcactatctc 46 ||||||||||||||||||| Sbjct: 1313 gatgcatcatcactatctc 1295 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 723,407 Number of Sequences: 3902068 Number of extensions: 723407 Number of successful extensions: 51455 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 14 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 51438 Number of HSP's gapped (non-prelim): 17 length of query: 100 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 79 effective length of database: 17,151,101,840 effective search space: 1354937045360 effective search space used: 1354937045360 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)