ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd20h03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|X52472.1|TAPRP T.aestivum mRNA for a proline-rich protein 139 2e-30
2gb|AC162927.3| Mus musculus BAC clone RP23-269E12 from chromosom... 42 0.28
3ref|NM_128263.3| Arabidopsis thaliana EIL1 (ETHYLENE-INSENSITIVE... 38 4.4
4gb|AC087430.3| Homo sapiens chromosome 3 clone RP11-242C8 map 3p... 38 4.4
5gb|AC154394.6| Mus musculus chromosome 18, clone RP23-315M1, com... 38 4.4
6gb|AC104511.5| Drosophila melanogaster X BAC RP98-39D14 (Roswell... 38 4.4
7gb|AC023685.4| Drosophila melanogaster 3L BAC RP98-20N12 (Roswel... 38 4.4
8gb|AC005623.3| Arabidopsis thaliana chromosome 2 clone T20P8 map... 38 4.4
9gb|AY065191.1| Arabidopsis thaliana ethylene-insensitive3-like1 ... 38 4.4
10gb|DQ300284.2| Phaseolus vulgaris L-asparaginase 2 mRNA, complet... 38 4.4
11gb|AC109222.14| Mus musculus chromosome 18, clone RP23-251L6, co... 38 4.4
12gb|BT003344.1| Arabidopsis thaliana ethylene-insensitive3-like1 ... 38 4.4
13gb|AE003491.4| Drosophila melanogaster chromosome X, section 43 ... 38 4.4
14gb|AF004213.1|AF004213 Arabidopsis thaliana ethylene-insensitive... 38 4.4

>emb|X52472.1|TAPRP T.aestivum mRNA for a proline-rich protein
          Length = 1487

 Score =  139 bits (70), Expect = 2e-30
 Identities = 76/78 (97%)
 Strand = Plus / Minus

                                                                        
Query: 23   aaaaagatgcatcatcactatctcgctagccggatactatgccacttattctggaaatag 82
            |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct: 1352 aaaaagatgcatcatcactatctcgctaaccggatactatgccacttattctagaaatag 1293

                              
Query: 83   cacatcgtggctccggac 100
            ||||||||||||||||||
Sbjct: 1292 cacatcgtggctccggac 1275



to top

>gb|AC162927.3| Mus musculus BAC clone RP23-269E12 from chromosome 9, complete sequence
          Length = 213948

 Score = 42.1 bits (21), Expect = 0.28
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 2      gatggaatacaagggaatgcaaaaa 26
              ||||||||||||||||||| |||||
Sbjct: 138904 gatggaatacaagggaatgaaaaaa 138880



to top

>ref|NM_128263.3| Arabidopsis thaliana EIL1 (ETHYLENE-INSENSITIVE3-LIKE 1);
            transcription factor AT2G27050 (EIL1) mRNA, complete cds
          Length = 2224

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 28   gatgcatcatcactatctc 46
            |||||||||||||||||||
Sbjct: 1313 gatgcatcatcactatctc 1295



to top

>gb|AC087430.3| Homo sapiens chromosome 3 clone RP11-242C8 map 3p, complete sequence
          Length = 152289

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 11    caagggaatgcaaaaaagatgca 33
             |||||||| ||||||||||||||
Sbjct: 63831 caagggaaagcaaaaaagatgca 63809



to top

>gb|AC154394.6| Mus musculus chromosome 18, clone RP23-315M1, complete sequence
          Length = 246033

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 23     aaaaagatgcatcatcact 41
              |||||||||||||||||||
Sbjct: 194865 aaaaagatgcatcatcact 194847



to top

>gb|AC104511.5| Drosophila melanogaster X BAC RP98-39D14 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 166000

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 8     atacaagggaatgcaaaaa 26
             |||||||||||||||||||
Sbjct: 49225 atacaagggaatgcaaaaa 49243



to top

>gb|AC023685.4| Drosophila melanogaster 3L BAC RP98-20N12 (Roswell Park Cancer
             Institute Drosophila BAC Library) complete sequence
          Length = 167926

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 8     atacaagggaatgcaaaaa 26
             |||||||||||||||||||
Sbjct: 18652 atacaagggaatgcaaaaa 18634



to top

>gb|AC005623.3| Arabidopsis thaliana chromosome 2 clone T20P8 map B68, complete
             sequence
          Length = 99345

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 28    gatgcatcatcactatctc 46
             |||||||||||||||||||
Sbjct: 46857 gatgcatcatcactatctc 46839



to top

>gb|AY065191.1| Arabidopsis thaliana ethylene-insensitive3-like1 (EIL1) (At2g27050;
            T20P8.10) mRNA, complete cds
          Length = 2076

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 28   gatgcatcatcactatctc 46
            |||||||||||||||||||
Sbjct: 1196 gatgcatcatcactatctc 1178



to top

>gb|DQ300284.2| Phaseolus vulgaris L-asparaginase 2 mRNA, complete cds
          Length = 981

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 1   tgatggaatacaagggaatgcaa 23
           ||||||||||||||||| |||||
Sbjct: 791 tgatggaatacaagggactgcaa 813



to top

>gb|AC109222.14| Mus musculus chromosome 18, clone RP23-251L6, complete sequence
          Length = 201310

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 23    aaaaagatgcatcatcact 41
             |||||||||||||||||||
Sbjct: 19590 aaaaagatgcatcatcact 19572



to top

>gb|BT003344.1| Arabidopsis thaliana ethylene-insensitive3-like1 (EIL1) (At2g27050)
            mRNA, complete cds
          Length = 1814

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 28   gatgcatcatcactatctc 46
            |||||||||||||||||||
Sbjct: 1069 gatgcatcatcactatctc 1051



to top

>gb|AE003491.4| Drosophila melanogaster chromosome X, section 43 of 74 of the complete
             sequence
          Length = 332030

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 8     atacaagggaatgcaaaaa 26
             |||||||||||||||||||
Sbjct: 75337 atacaagggaatgcaaaaa 75319



to top

>gb|AF004213.1|AF004213 Arabidopsis thaliana ethylene-insensitive3-like1 (EIL1) mRNA,
            complete cds
          Length = 2225

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 28   gatgcatcatcactatctc 46
            |||||||||||||||||||
Sbjct: 1313 gatgcatcatcactatctc 1295


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 723,407
Number of Sequences: 3902068
Number of extensions: 723407
Number of successful extensions: 51455
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 51438
Number of HSP's gapped (non-prelim): 17
length of query: 100
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 79
effective length of database: 17,151,101,840
effective search space: 1354937045360
effective search space used: 1354937045360
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
to top