Clone Information

BLAST Search Result

Clone Name	rbasd20g24
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	APAG_BRUSU (Q8G2L5) Protein apaG	92	1e-18
2	APAG_RHIME (Q92S97) Protein apaG	92	1e-18
3	APAG_AGRT5 (Q8UI68) Protein apaG	91	2e-18
4	APAG_BRUME (Q8YFA4) Protein apaG	90	4e-18
5	APAG_RHILO (Q98BB4) Protein apaG	88	2e-17
6	APAG_RHOPA (Q6N0J2) Protein apaG	87	3e-17
7	APAG_CHRVO (Q7NW07) Protein apaG	85	2e-16
8	APAG_RHIET (Q9ZES3) Protein apaG	84	2e-16
9	APAG_BORPE (Q7VU61) Protein apaG	84	2e-16
10	APAG_BORPA (Q7W393) Protein apaG	84	2e-16
11	APAG_BORBR (Q7WEL1) Protein apaG	84	2e-16
12	APAG_BRAJA (Q89VE6) Protein apaG	83	7e-16
13	APAG_YERPE (Q8ZIK6) Protein apaG	82	1e-15
14	APAG_SHEON (Q8EB92) Protein apaG	81	2e-15
15	APAG_WOLPM (Q73G26) Protein apaG	81	2e-15
16	APAG_XYLFA (Q9PBJ5) Protein apaG	80	4e-15
17	APAG_XANCP (Q8PCE4) Protein apaG	79	7e-15
18	APAG_BDEBA (Q6MK56) Protein apaG	79	7e-15
19	APAG_CAUCR (Q9A655) Protein apaG	79	9e-15
20	APAG_XYLFT (Q87C84) Protein apaG	79	9e-15
21	APAG_PSEAE (Q9I5U6) Protein apaG	78	2e-14
22	APAG_PHOLL (Q7N8V8) Protein apaG	78	2e-14
23	APAG_XANAC (Q8PP26) Protein apaG	77	4e-14
24	APAG_VIBCH (Q9KUS3) Protein apaG	77	5e-14
25	APAG_PSEPK (Q88QT7) Protein apaG	76	8e-14
26	APAG_VIBPA (Q87ST7) Protein apaG	75	1e-13
27	APAG_VIBVY (Q7MP87) Protein apaG	75	2e-13
28	APAG_VIBVU (Q8DED1) Protein apaG	75	2e-13
29	APAG_SHIFL (P62675) Protein apaG	74	2e-13
30	APAG_ECOLI (P62672) Protein apaG	74	2e-13
31	APAG_ECOL6 (P62673) Protein apaG	74	2e-13
32	APAG_ECO57 (P62674) Protein apaG	74	2e-13
33	APAG_PSESM (Q88A47) Protein apaG	74	2e-13
34	APAG_NITEU (Q82UC1) Protein apaG	73	7e-13
35	APAG_SALTY (Q56017) Protein apaG (Protein corD)	72	9e-13
36	APAG_SALTI (Q8Z9J8) Protein apaG (Protein corD)	71	3e-12
37	APAG_RALSO (Q8XVF3) Protein apaG	69	8e-12
38	APAG_PHOPR (Q6LV42) Protein apaG	68	2e-11
39	APAG_DEIRA (Q9RXS8) Protein apaG	67	4e-11
40	FBX3_HUMAN (Q9UK99) F-box only protein 3	64	3e-10
41	PDIP2_MOUSE (Q91VA6) Polymerase delta-interacting protein 2	64	3e-10
42	PDIP2_HUMAN (Q9Y2S7) Polymerase delta-interacting protein 2 (38 ...	64	3e-10
43	FBX3_MOUSE (Q9DC63) F-box only protein 3	64	4e-10
44	DPOL_THEAG (O33845) DNA polymerase (EC 2.7.7.7) (Pol Tfu) [Conta...	32	1.3
45	RUMB_VIBCH (Q9KL20) 23S rRNA (uracil-5-)-methyltransferase rumB ...	30	5.0
46	CYB_INIGE (Q9G7U1) Cytochrome b	30	6.6
47	VP26_VZVD (P09279) Capsid protein VP26	30	6.6
48	HUNB_MUSDO (Q01778) Protein hunchback	29	8.6

>APAG_BRUSU (Q8G2L5) Protein apaG|
          Length = 130

 Score = 92.0 bits (227), Expect = 1e-18
 Identities = 46/93 (49%), Positives = 58/93 (62%)
 Frame = -1

Query: 578 YRIRITNNSQRAVQLLRRHWIVTDANGRTENVWGVGVVGEQPVIFPKTGFEYSSACPLNT 399
           YR+ I NNS   VQL  R+W +TDANG  + V G GVVGEQPV+ P   ++YSS CPL T
Sbjct: 33  YRVTIVNNSSETVQLCSRYWQITDANGHVQEVRGSGVVGEQPVLDPGASYQYSSGCPLTT 92

Query: 398 PNGRMEGDFEMKHIDKVGSSTFNIAIAPFSLSI 300
            +G M G ++MK  D    + F I I  FSL +
Sbjct: 93  SSGVMVGRYQMKGED---GAQFEIEIPAFSLDV 122

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>APAG_RHIME (Q92S97) Protein apaG|
          Length = 130

 Score = 91.7 bits (226), Expect = 1e-18
 Identities = 46/95 (48%), Positives = 63/95 (66%)
 Frame = -1

Query: 578 YRIRITNNSQRAVQLLRRHWIVTDANGRTENVWGVGVVGEQPVIFPKTGFEYSSACPLNT 399
           YRI I N+S  AV+L+ R+W +TD NG+ + V G GV+GEQP++ P   +EYSS CPL+T
Sbjct: 33  YRIIIANHSGLAVRLMTRYWHITDENGQVDEVSGPGVIGEQPLLNPGDTYEYSSGCPLDT 92

Query: 398 PNGRMEGDFEMKHIDKVGSSTFNIAIAPFSLSILG 294
           P+G M G + M   +  G  TF++AI  FSL   G
Sbjct: 93  PSGVMFGHYSM---EAEGGETFDVAIPAFSLDSPG 124

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>APAG_AGRT5 (Q8UI68) Protein apaG|
          Length = 130

 Score = 90.9 bits (224), Expect = 2e-18
 Identities = 44/95 (46%), Positives = 60/95 (63%)
 Frame = -1

Query: 578 YRIRITNNSQRAVQLLRRHWIVTDANGRTENVWGVGVVGEQPVIFPKTGFEYSSACPLNT 399
           Y++ I NNS   V+L+ R+W +TD NG+ + V+G GVVGEQP + P   +EYSS CPL+T
Sbjct: 33  YKVVIANNSDVPVKLVNRYWHITDQNGQVDEVYGPGVVGEQPQLKPGDSYEYSSGCPLDT 92

Query: 398 PNGRMEGDFEMKHIDKVGSSTFNIAIAPFSLSILG 294
           P+G M G +EM   +      FN+ I  FSL   G
Sbjct: 93  PSGLMFGHYEM---ETENGEVFNVTIPAFSLDSPG 124

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>APAG_BRUME (Q8YFA4) Protein apaG|
          Length = 130

 Score = 90.1 bits (222), Expect = 4e-18
 Identities = 45/93 (48%), Positives = 58/93 (62%)
 Frame = -1

Query: 578 YRIRITNNSQRAVQLLRRHWIVTDANGRTENVWGVGVVGEQPVIFPKTGFEYSSACPLNT 399
           YR+ I NNS   VQL  R+W +TDANG  + V G GVVG+QPV+ P   ++YSS CPL T
Sbjct: 33  YRVTIVNNSSETVQLCSRYWQITDANGHVQEVRGSGVVGKQPVLDPGDSYQYSSGCPLTT 92

Query: 398 PNGRMEGDFEMKHIDKVGSSTFNIAIAPFSLSI 300
            +G M G ++MK  D    + F I I  FSL +
Sbjct: 93  SSGVMVGRYQMKGED---GAQFEIEIPAFSLDV 122

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>APAG_RHILO (Q98BB4) Protein apaG|
          Length = 130

 Score = 88.2 bits (217), Expect = 2e-17
 Identities = 47/95 (49%), Positives = 62/95 (65%)
 Frame = -1

Query: 578 YRIRITNNSQRAVQLLRRHWIVTDANGRTENVWGVGVVGEQPVIFPKTGFEYSSACPLNT 399
           Y+I I N S   VQLL R+W +TD  GR E V G GVVG+QP + P   ++Y+S CPL+T
Sbjct: 33  YQITIDNQSDEFVQLLSRYWHITDGAGRVEEVRGPGVVGDQPELNPGDSYQYTSGCPLST 92

Query: 398 PNGRMEGDFEMKHIDKVGSSTFNIAIAPFSLSILG 294
           P+G M G + M+  +K G  TF+IAI  FSL + G
Sbjct: 93  PSGIMVGHYTMR--NKRG-ETFDIAIPAFSLDLPG 124

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>APAG_RHOPA (Q6N0J2) Protein apaG|
          Length = 130

 Score = 87.4 bits (215), Expect = 3e-17
 Identities = 43/92 (46%), Positives = 59/92 (64%)
 Frame = -1

Query: 581 AYRIRITNNSQRAVQLLRRHWIVTDANGRTENVWGVGVVGEQPVIFPKTGFEYSSACPLN 402
           +Y + ITN+ +  V+L  RHW++TDA+GRT+ V G GVVGEQPV+ P   FEY+S  PL 
Sbjct: 32  SYTVVITNSGEETVKLRTRHWVITDASGRTQEVRGEGVVGEQPVLAPGERFEYTSGVPLP 91

Query: 401 TPNGRMEGDFEMKHIDKVGSSTFNIAIAPFSL 306
           T +G M G ++M   +      F I + PFSL
Sbjct: 92  TASGFMAGRYQM---ETEAGEKFEIDVPPFSL 120

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>APAG_CHRVO (Q7NW07) Protein apaG|
          Length = 126

 Score = 84.7 bits (208), Expect = 2e-16
 Identities = 39/72 (54%), Positives = 50/72 (69%)
 Frame = -1

Query: 581 AYRIRITNNSQRAVQLLRRHWIVTDANGRTENVWGVGVVGEQPVIFPKTGFEYSSACPLN 402
           AYR+RITN      QL+ RHWI+TDAN + + V G+GVVGEQP + P   FEYSSA  + 
Sbjct: 31  AYRVRITNTGSEPAQLISRHWIITDANQQVQEVRGMGVVGEQPHLDPGQVFEYSSAAHIT 90

Query: 401 TPNGRMEGDFEM 366
           TP G M+G ++M
Sbjct: 91  TPYGSMKGAYQM 102

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>APAG_RHIET (Q9ZES3) Protein apaG|
          Length = 130

 Score = 84.3 bits (207), Expect = 2e-16
 Identities = 44/95 (46%), Positives = 61/95 (64%)
 Frame = -1

Query: 578 YRIRITNNSQRAVQLLRRHWIVTDANGRTENVWGVGVVGEQPVIFPKTGFEYSSACPLNT 399
           YRI I+NNS  AV+L+ R+W +TD NG+ + V G GVVGEQP + P   +EYSS CPL+T
Sbjct: 33  YRIVISNNSGVAVRLVNRYWNITDQNGQVDEVTGPGVVGEQPRLSPGDTYEYSSGCPLDT 92

Query: 398 PNGRMEGDFEMKHIDKVGSSTFNIAIAPFSLSILG 294
           P+  M G ++M+  +      F++ I  FSL   G
Sbjct: 93  PSAVMFGHYQMETDE---GELFDVDIPAFSLDSPG 124

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>APAG_BORPE (Q7VU61) Protein apaG|
          Length = 131

 Score = 84.3 bits (207), Expect = 2e-16
 Identities = 41/94 (43%), Positives = 55/94 (58%)
 Frame = -1

Query: 581 AYRIRITNNSQRAVQLLRRHWIVTDANGRTENVWGVGVVGEQPVIFPKTGFEYSSACPLN 402
           AY +RITN      Q++ RHWI+TD   R + V G+GVVG+QP++ P   FEY+S CPL 
Sbjct: 36  AYTVRITNTGSHPAQVISRHWIITDGEERVQEVRGLGVVGQQPLLAPGETFEYTSGCPLP 95

Query: 401 TPNGRMEGDFEMKHIDKVGSSTFNIAIAPFSLSI 300
           TP G M G +   H        F + IA F L++
Sbjct: 96  TPIGTMRGTY---HCVGENGIPFEVPIAEFLLAM 126

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>APAG_BORPA (Q7W393) Protein apaG|
          Length = 131

 Score = 84.3 bits (207), Expect = 2e-16
 Identities = 41/94 (43%), Positives = 55/94 (58%)
 Frame = -1

Query: 581 AYRIRITNNSQRAVQLLRRHWIVTDANGRTENVWGVGVVGEQPVIFPKTGFEYSSACPLN 402
           AY +RITN      Q++ RHWI+TD   R + V G+GVVG+QP++ P   FEY+S CPL 
Sbjct: 36  AYTVRITNTGSHPAQVISRHWIITDGEERVQEVRGLGVVGQQPLLAPGETFEYTSGCPLP 95

Query: 401 TPNGRMEGDFEMKHIDKVGSSTFNIAIAPFSLSI 300
           TP G M G +   H        F + IA F L++
Sbjct: 96  TPIGTMRGTY---HCVGENGIPFEVPIAEFLLAM 126

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>APAG_BORBR (Q7WEL1) Protein apaG|
          Length = 131

 Score = 84.3 bits (207), Expect = 2e-16
 Identities = 41/94 (43%), Positives = 55/94 (58%)
 Frame = -1

Query: 581 AYRIRITNNSQRAVQLLRRHWIVTDANGRTENVWGVGVVGEQPVIFPKTGFEYSSACPLN 402
           AY +RITN      Q++ RHWI+TD   R + V G+GVVG+QP++ P   FEY+S CPL 
Sbjct: 36  AYTVRITNTGSHPAQVISRHWIITDGEERVQEVRGLGVVGQQPLLAPGETFEYTSGCPLP 95

Query: 401 TPNGRMEGDFEMKHIDKVGSSTFNIAIAPFSLSI 300
           TP G M G +   H        F + IA F L++
Sbjct: 96  TPIGTMRGTY---HCVGENGIPFEVPIAEFLLAM 126

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>APAG_BRAJA (Q89VE6) Protein apaG|
          Length = 130

 Score = 82.8 bits (203), Expect = 7e-16
 Identities = 44/92 (47%), Positives = 58/92 (63%)
 Frame = -1

Query: 581 AYRIRITNNSQRAVQLLRRHWIVTDANGRTENVWGVGVVGEQPVIFPKTGFEYSSACPLN 402
           +Y I ITN+ +  VQL  RHWI+TDA GR + V G GVVGEQP + P   FEY+S  PL+
Sbjct: 32  SYTIVITNSGEETVQLKTRHWIITDATGRQQEVKGEGVVGEQPTLAPGERFEYTSGVPLS 91

Query: 401 TPNGRMEGDFEMKHIDKVGSSTFNIAIAPFSL 306
           T +G M G ++M  + + G   F I +  FSL
Sbjct: 92  TASGFMTGRYQM--VSESG-ERFEIDVPTFSL 120

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>APAG_YERPE (Q8ZIK6) Protein apaG|
          Length = 125

 Score = 82.0 bits (201), Expect = 1e-15
 Identities = 43/94 (45%), Positives = 59/94 (62%)
 Frame = -1

Query: 581 AYRIRITNNSQRAVQLLRRHWIVTDANGRTENVWGVGVVGEQPVIFPKTGFEYSSACPLN 402
           AY + + N  +  VQLL R+W++T++NGR   V G GV+GEQP+I P   F+Y+S   L 
Sbjct: 30  AYTVTVRNLGRSNVQLLGRYWLITNSNGRQTEVQGEGVIGEQPLILPGNEFQYTSGAVLE 89

Query: 401 TPNGRMEGDFEMKHIDKVGSSTFNIAIAPFSLSI 300
           TP G MEG +EM  ID +G + F   I  F L+I
Sbjct: 90  TPLGTMEGHYEM--IDHLGQA-FRTVIPVFRLAI 120

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>APAG_SHEON (Q8EB92) Protein apaG|
          Length = 126

 Score = 81.3 bits (199), Expect = 2e-15
 Identities = 44/96 (45%), Positives = 58/96 (60%)
 Frame = -1

Query: 581 AYRIRITNNSQRAVQLLRRHWIVTDANGRTENVWGVGVVGEQPVIFPKTGFEYSSACPLN 402
           +Y I I N  ++A +L  RHWI+TDANG+T  V G GVVGE P I P T ++Y+S   L+
Sbjct: 31  SYTITIINLGEQAAKLETRHWIITDANGKTSEVQGAGVVGETPTIPPNTAYQYTSGTVLD 90

Query: 401 TPNGRMEGDFEMKHIDKVGSSTFNIAIAPFSLSILG 294
           TP G M G + M  + + G   FN  I PF L+  G
Sbjct: 91  TPFGIMYGTYGM--VSESGEH-FNAIIKPFRLATPG 123

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>APAG_WOLPM (Q73G26) Protein apaG|
          Length = 133

 Score = 81.3 bits (199), Expect = 2e-15
 Identities = 39/91 (42%), Positives = 55/91 (60%)
 Frame = -1

Query: 578 YRIRITNNSQRAVQLLRRHWIVTDANGRTENVWGVGVVGEQPVIFPKTGFEYSSACPLNT 399
           Y ++I N SQ  +QLL RHW + D  G+   + GVGV+GEQPVI     F+Y+S   LN 
Sbjct: 35  YNVKIKNKSQSTIQLLSRHWQIIDYKGKVNEIAGVGVIGEQPVIKSGEVFKYTSGTYLNV 94

Query: 398 PNGRMEGDFEMKHIDKVGSSTFNIAIAPFSL 306
           P+G M+G +E  + + +    F + I PFSL
Sbjct: 95  PSGIMQGKYEFLNEESI--KVFEVMIPPFSL 123

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>APAG_XYLFA (Q9PBJ5) Protein apaG|
          Length = 127

 Score = 80.1 bits (196), Expect = 4e-15
 Identities = 42/94 (44%), Positives = 55/94 (58%)
 Frame = -1

Query: 581 AYRIRITNNSQRAVQLLRRHWIVTDANGRTENVWGVGVVGEQPVIFPKTGFEYSSACPLN 402
           AY IRI N      +L+ RHW +TDANG+ E V G GV+GEQP + P   F Y+S   L 
Sbjct: 32  AYTIRIYNAGNVPARLIARHWQITDANGKVEYVTGEGVIGEQPRLRPGEEFRYTSGVVLG 91

Query: 401 TPNGRMEGDFEMKHIDKVGSSTFNIAIAPFSLSI 300
           T  G+M+G ++M   D    + F   IAPF LS+
Sbjct: 92  TEQGQMQGHYDMMADD---GTEFTATIAPFVLSV 122

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>APAG_XANCP (Q8PCE4) Protein apaG|
          Length = 127

 Score = 79.3 bits (194), Expect = 7e-15
 Identities = 44/94 (46%), Positives = 55/94 (58%)
 Frame = -1

Query: 581 AYRIRITNNSQRAVQLLRRHWIVTDANGRTENVWGVGVVGEQPVIFPKTGFEYSSACPLN 402
           AY IRI N      +L+ RHW +TDANGRTE V G GVVGEQP + P   F Y+S   L 
Sbjct: 32  AYSIRIQNAGAVPARLIARHWKITDANGRTEQVDGEGVVGEQPRLRPGEAFHYTSGVLLE 91

Query: 401 TPNGRMEGDFEMKHIDKVGSSTFNIAIAPFSLSI 300
           T  G+M+G ++M   D    + F   IA F LS+
Sbjct: 92  TEQGQMQGYYDMVADD---GTEFTAPIAAFVLSV 122

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>APAG_BDEBA (Q6MK56) Protein apaG|
          Length = 127

 Score = 79.3 bits (194), Expect = 7e-15
 Identities = 44/94 (46%), Positives = 54/94 (57%), Gaps = 2/94 (2%)
 Frame = -1

Query: 581 AYRIRITNNSQRAVQLLRRHWIVTDANGRTENVWGVGVVGEQPVIFPKTGFEYSSACPLN 402
           AY+I ITN      QL+ RHW++TDA G+ E V G GVVG QP I P   FEY SACPL 
Sbjct: 32  AYKITITNTGSTPAQLMSRHWVITDALGKKEEVRGPGVVGLQPKIQPGQTFEYDSACPLT 91

Query: 401 TPNGRMEGDFEMKHIDKVGSS--TFNIAIAPFSL 306
           T  G M G +       VG S  +F++ +  F L
Sbjct: 92  TSTGSMVGRYFF-----VGESGESFSVEVPEFYL 120

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>APAG_CAUCR (Q9A655) Protein apaG|
          Length = 140

 Score = 79.0 bits (193), Expect = 9e-15
 Identities = 40/96 (41%), Positives = 55/96 (57%)
 Frame = -1

Query: 581 AYRIRITNNSQRAVQLLRRHWIVTDANGRTENVWGVGVVGEQPVIFPKTGFEYSSACPLN 402
           +Y + I N+ +  V L+ R W +TD   R   V G GVVGEQP + P+  F Y S CPL 
Sbjct: 42  SYTVEIENHGEETVTLIARRWTITDGFNRVNEVEGSGVVGEQPELKPREAFRYVSNCPLP 101

Query: 401 TPNGRMEGDFEMKHIDKVGSSTFNIAIAPFSLSILG 294
           TP+G M G ++M  +   G   F++AI  FSL + G
Sbjct: 102 TPSGAMRGSYQM--VTDAG-DLFDVAIPEFSLHLPG 134

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>APAG_XYLFT (Q87C84) Protein apaG|
          Length = 127

 Score = 79.0 bits (193), Expect = 9e-15
 Identities = 41/94 (43%), Positives = 55/94 (58%)
 Frame = -1

Query: 581 AYRIRITNNSQRAVQLLRRHWIVTDANGRTENVWGVGVVGEQPVIFPKTGFEYSSACPLN 402
           AY IRI N      +L+ RHW +TDANG+ E V G GV+GEQP + P   F Y+S   L 
Sbjct: 32  AYTIRIYNAGNVPARLIARHWQITDANGKVEYVTGEGVIGEQPRLRPGEEFRYTSGVVLG 91

Query: 401 TPNGRMEGDFEMKHIDKVGSSTFNIAIAPFSLSI 300
           T  G+M+G ++M   D    + F   I+PF LS+
Sbjct: 92  TEQGQMQGHYDMMADD---GTEFTATISPFVLSV 122

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>APAG_PSEAE (Q9I5U6) Protein apaG|
          Length = 126

 Score = 78.2 bits (191), Expect = 2e-14
 Identities = 42/96 (43%), Positives = 55/96 (57%)
 Frame = -1

Query: 581 AYRIRITNNSQRAVQLLRRHWIVTDANGRTENVWGVGVVGEQPVIFPKTGFEYSSACPLN 402
           AY + I N  +   QLL RHWI+TD +GRT+ V G GVVGEQP+I P     Y+S   L 
Sbjct: 31  AYTVTIENQGEVPAQLLSRHWIITDGDGRTQEVRGAGVVGEQPLIAPGAQHTYTSGTVLA 90

Query: 401 TPNGRMEGDFEMKHIDKVGSSTFNIAIAPFSLSILG 294
           T  G M G ++M   D +    F+ AI  F L++ G
Sbjct: 91  TRVGSMRGSYQMLGSDGI---AFDAAIPVFRLAVPG 123

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>APAG_PHOLL (Q7N8V8) Protein apaG|
          Length = 125

 Score = 77.8 bits (190), Expect = 2e-14
 Identities = 43/94 (45%), Positives = 57/94 (60%)
 Frame = -1

Query: 581 AYRIRITNNSQRAVQLLRRHWIVTDANGRTENVWGVGVVGEQPVIFPKTGFEYSSACPLN 402
           AY I I N  +  VQL+ R+W++T+++     V G GVVGEQP+I P T + Y+S   L 
Sbjct: 30  AYTITIRNLGRERVQLINRYWLITNSDSHQTEVQGEGVVGEQPIIQPGTEYRYTSGAILE 89

Query: 401 TPNGRMEGDFEMKHIDKVGSSTFNIAIAPFSLSI 300
           TP G MEG +EM  ID  G   F +AI  F L+I
Sbjct: 90  TPLGTMEGHYEM--IDHNG-EPFRVAIPVFRLAI 120

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>APAG_XANAC (Q8PP26) Protein apaG|
          Length = 127

 Score = 77.0 bits (188), Expect = 4e-14
 Identities = 43/94 (45%), Positives = 54/94 (57%)
 Frame = -1

Query: 581 AYRIRITNNSQRAVQLLRRHWIVTDANGRTENVWGVGVVGEQPVIFPKTGFEYSSACPLN 402
           AY IRI N      +L+ RHW +TD NGRTE V G GVVGEQP + P   F Y+S   L 
Sbjct: 32  AYSIRIQNAGAVPARLVARHWQITDGNGRTEQVDGEGVVGEQPWLRPGEAFHYTSGVLLE 91

Query: 401 TPNGRMEGDFEMKHIDKVGSSTFNIAIAPFSLSI 300
           T  G+M+G ++M   D    + F   IA F LS+
Sbjct: 92  TEQGQMQGHYDMVADD---GTEFIAPIAAFVLSV 122

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>APAG_VIBCH (Q9KUS3) Protein apaG|
          Length = 126

 Score = 76.6 bits (187), Expect = 5e-14
 Identities = 44/94 (46%), Positives = 58/94 (61%)
 Frame = -1

Query: 581 AYRIRITNNSQRAVQLLRRHWIVTDANGRTENVWGVGVVGEQPVIFPKTGFEYSSACPLN 402
           AY I I N S + VQL+ R W++TDA+G+   V G GVVGEQP I     + YSS   L+
Sbjct: 31  AYLITIKNLSSQTVQLMSRRWLITDADGKQTVVEGDGVVGEQPRIKANDEYTYSSGTALD 90

Query: 401 TPNGRMEGDFEMKHIDKVGSSTFNIAIAPFSLSI 300
           TP G M+G + M  ID+ G S F + I PF L++
Sbjct: 91  TPVGVMQGQYLM--IDEQGES-FTVEIEPFRLAV 121

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>APAG_PSEPK (Q88QT7) Protein apaG|
          Length = 126

 Score = 75.9 bits (185), Expect = 8e-14
 Identities = 39/96 (40%), Positives = 55/96 (57%)
 Frame = -1

Query: 581 AYRIRITNNSQRAVQLLRRHWIVTDANGRTENVWGVGVVGEQPVIFPKTGFEYSSACPLN 402
           AY I + NN   + +LL RHW++T+ +G  E V G GVVG+QP I P     YSS   ++
Sbjct: 31  AYTITVQNNGSLSAKLLSRHWLITNGDGEVEEVRGAGVVGQQPNIDPGQSHTYSSGAVIS 90

Query: 401 TPNGRMEGDFEMKHIDKVGSSTFNIAIAPFSLSILG 294
           T  G M+G ++M   D      F+  IAPF L++ G
Sbjct: 91  TRVGTMQGSYQMFAED---GKRFDAEIAPFRLAVPG 123

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>APAG_VIBPA (Q87ST7) Protein apaG|
          Length = 126

 Score = 75.5 bits (184), Expect = 1e-13
 Identities = 43/94 (45%), Positives = 57/94 (60%)
 Frame = -1

Query: 581 AYRIRITNNSQRAVQLLRRHWIVTDANGRTENVWGVGVVGEQPVIFPKTGFEYSSACPLN 402
           AY I I N SQ+ VQL+ R W++TD+NG+   V G GVVG+QP I     + YSS   L 
Sbjct: 31  AYVITIKNLSQQTVQLISRRWLITDSNGKQMTVEGEGVVGQQPFIPSNDEYTYSSGTALE 90

Query: 401 TPNGRMEGDFEMKHIDKVGSSTFNIAIAPFSLSI 300
           TP G M+G ++M  +D+ G   F   I PF L+I
Sbjct: 91  TPVGVMQGHYKM--LDEKGQE-FITEIEPFRLAI 121

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>APAG_VIBVY (Q7MP87) Protein apaG|
          Length = 126

 Score = 74.7 bits (182), Expect = 2e-13
 Identities = 43/94 (45%), Positives = 57/94 (60%)
 Frame = -1

Query: 581 AYRIRITNNSQRAVQLLRRHWIVTDANGRTENVWGVGVVGEQPVIFPKTGFEYSSACPLN 402
           AY I I N+S  +VQLL R W++TDANG+  +V G GVVG+QP I     + YSS   L+
Sbjct: 31  AYIITIKNHSSESVQLLSRRWLITDANGKQISVEGDGVVGQQPFIDAGDEYTYSSGTALD 90

Query: 401 TPNGRMEGDFEMKHIDKVGSSTFNIAIAPFSLSI 300
           TP G M+G + M   D  G   F + I PF L++
Sbjct: 91  TPVGVMQGQYIMH--DAQGKE-FVVEIEPFRLAV 121

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>APAG_VIBVU (Q8DED1) Protein apaG|
          Length = 126

 Score = 74.7 bits (182), Expect = 2e-13
 Identities = 43/94 (45%), Positives = 57/94 (60%)
 Frame = -1

Query: 581 AYRIRITNNSQRAVQLLRRHWIVTDANGRTENVWGVGVVGEQPVIFPKTGFEYSSACPLN 402
           AY I I N+S  +VQLL R W++TDANG+  +V G GVVG+QP I     + YSS   L+
Sbjct: 31  AYIITIKNHSSESVQLLSRRWLITDANGKQISVEGDGVVGQQPFIDAGDEYTYSSGTALD 90

Query: 401 TPNGRMEGDFEMKHIDKVGSSTFNIAIAPFSLSI 300
           TP G M+G + M   D  G   F + I PF L++
Sbjct: 91  TPVGVMQGQYIMH--DAQGKE-FVVEIEPFRLAV 121

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>APAG_SHIFL (P62675) Protein apaG|
          Length = 125

 Score = 74.3 bits (181), Expect = 2e-13
 Identities = 41/94 (43%), Positives = 58/94 (61%)
 Frame = -1

Query: 581 AYRIRITNNSQRAVQLLRRHWIVTDANGRTENVWGVGVVGEQPVIFPKTGFEYSSACPLN 402
           AY + I N  +  VQLL R+W++T+ NGR   V G GVVG QP+I P   ++Y+S   + 
Sbjct: 30  AYTVTIRNLGRAPVQLLGRYWLITNGNGRETEVQGEGVVGVQPLIAPGEEYQYTSGAIIE 89

Query: 401 TPNGRMEGDFEMKHIDKVGSSTFNIAIAPFSLSI 300
           TP G M+G +EM  ID+ G   F+I I  F L++
Sbjct: 90  TPLGTMQGHYEM--IDENG-VPFSIDIPVFRLAV 120

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>APAG_ECOLI (P62672) Protein apaG|
          Length = 125

 Score = 74.3 bits (181), Expect = 2e-13
 Identities = 41/94 (43%), Positives = 58/94 (61%)
 Frame = -1

Query: 581 AYRIRITNNSQRAVQLLRRHWIVTDANGRTENVWGVGVVGEQPVIFPKTGFEYSSACPLN 402
           AY + I N  +  VQLL R+W++T+ NGR   V G GVVG QP+I P   ++Y+S   + 
Sbjct: 30  AYTVTIRNLGRAPVQLLGRYWLITNGNGRETEVQGEGVVGVQPLIAPGEEYQYTSGAIIE 89

Query: 401 TPNGRMEGDFEMKHIDKVGSSTFNIAIAPFSLSI 300
           TP G M+G +EM  ID+ G   F+I I  F L++
Sbjct: 90  TPLGTMQGHYEM--IDENG-VPFSIDIPVFRLAV 120

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>APAG_ECOL6 (P62673) Protein apaG|
          Length = 125

 Score = 74.3 bits (181), Expect = 2e-13
 Identities = 41/94 (43%), Positives = 58/94 (61%)
 Frame = -1

Query: 581 AYRIRITNNSQRAVQLLRRHWIVTDANGRTENVWGVGVVGEQPVIFPKTGFEYSSACPLN 402
           AY + I N  +  VQLL R+W++T+ NGR   V G GVVG QP+I P   ++Y+S   + 
Sbjct: 30  AYTVTIRNLGRAPVQLLGRYWLITNGNGRETEVQGEGVVGVQPLIAPGEEYQYTSGAIIE 89

Query: 401 TPNGRMEGDFEMKHIDKVGSSTFNIAIAPFSLSI 300
           TP G M+G +EM  ID+ G   F+I I  F L++
Sbjct: 90  TPLGTMQGHYEM--IDENG-VPFSIDIPVFRLAV 120

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>APAG_ECO57 (P62674) Protein apaG|
          Length = 125

 Score = 74.3 bits (181), Expect = 2e-13
 Identities = 41/94 (43%), Positives = 58/94 (61%)
 Frame = -1

Query: 581 AYRIRITNNSQRAVQLLRRHWIVTDANGRTENVWGVGVVGEQPVIFPKTGFEYSSACPLN 402
           AY + I N  +  VQLL R+W++T+ NGR   V G GVVG QP+I P   ++Y+S   + 
Sbjct: 30  AYTVTIRNLGRAPVQLLGRYWLITNGNGRETEVQGEGVVGVQPLIAPGEEYQYTSGAIIE 89

Query: 401 TPNGRMEGDFEMKHIDKVGSSTFNIAIAPFSLSI 300
           TP G M+G +EM  ID+ G   F+I I  F L++
Sbjct: 90  TPLGTMQGHYEM--IDENG-VPFSIDIPVFRLAV 120

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>APAG_PSESM (Q88A47) Protein apaG|
          Length = 126

 Score = 74.3 bits (181), Expect = 2e-13
 Identities = 39/96 (40%), Positives = 53/96 (55%)
 Frame = -1

Query: 581 AYRIRITNNSQRAVQLLRRHWIVTDANGRTENVWGVGVVGEQPVIFPKTGFEYSSACPLN 402
           AY I + NN +   +LL RHWI+TD +G  E V G GVVG+QP+I       YSS   + 
Sbjct: 31  AYTITVHNNGELPAKLLSRHWIITDGDGHVEEVRGEGVVGQQPLIKVGQSHTYSSGTVMT 90

Query: 401 TPNGRMEGDFEMKHIDKVGSSTFNIAIAPFSLSILG 294
           T  G M+G ++M   D      F+  I PF L++ G
Sbjct: 91  TQVGNMQGSYQMLAED---GKRFDAVIEPFRLAVPG 123

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>APAG_NITEU (Q82UC1) Protein apaG|
          Length = 127

 Score = 72.8 bits (177), Expect = 7e-13
 Identities = 39/94 (41%), Positives = 55/94 (58%)
 Frame = -1

Query: 581 AYRIRITNNSQRAVQLLRRHWIVTDANGRTENVWGVGVVGEQPVIFPKTGFEYSSACPLN 402
           AY I I N    A QL+ RHWI+T  +G T  V G+GVVGEQP++ P   FEY+S   ++
Sbjct: 32  AYTITINNTGSVASQLVSRHWIITSGDGVTREVRGLGVVGEQPLLKPGETFEYTSGTAIS 91

Query: 401 TPNGRMEGDFEMKHIDKVGSSTFNIAIAPFSLSI 300
           +  G M+G ++M   D      F++ I  F LS+
Sbjct: 92  SIAGSMKGSYQMVAED---GFHFSVEIPEFILSV 122

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>APAG_SALTY (Q56017) Protein apaG (Protein corD)|
          Length = 125

 Score = 72.4 bits (176), Expect = 9e-13
 Identities = 40/94 (42%), Positives = 57/94 (60%)
 Frame = -1

Query: 581 AYRIRITNNSQRAVQLLRRHWIVTDANGRTENVWGVGVVGEQPVIFPKTGFEYSSACPLN 402
           AY + I N  +  VQLL R+W++T+ +GR   V G GVVG QP I P   ++Y+S   + 
Sbjct: 30  AYTVTIRNLGRAPVQLLGRYWLITNGHGRETEVQGEGVVGVQPRIAPGEEYQYTSGAVIE 89

Query: 401 TPNGRMEGDFEMKHIDKVGSSTFNIAIAPFSLSI 300
           TP G M+G +EM  ID+ G + F I I  F L++
Sbjct: 90  TPLGTMQGHYEM--IDENGDA-FTIDIPVFRLAV 120

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>APAG_SALTI (Q8Z9J8) Protein apaG (Protein corD)|
          Length = 125

 Score = 70.9 bits (172), Expect = 3e-12
 Identities = 39/94 (41%), Positives = 56/94 (59%)
 Frame = -1

Query: 581 AYRIRITNNSQRAVQLLRRHWIVTDANGRTENVWGVGVVGEQPVIFPKTGFEYSSACPLN 402
           AY + I N  +  VQLL R+W++T+ +GR   V G GVVG QP I P   ++Y+    + 
Sbjct: 30  AYTVTIRNLGRAPVQLLGRYWLITNGHGRETEVQGKGVVGVQPRIAPGEEYQYTGGAVIE 89

Query: 401 TPNGRMEGDFEMKHIDKVGSSTFNIAIAPFSLSI 300
           TP G M+G +EM  ID+ G + F I I  F L++
Sbjct: 90  TPLGTMQGHYEM--IDENGDA-FTIDIPVFRLAV 120

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>APAG_RALSO (Q8XVF3) Protein apaG|
          Length = 124

 Score = 69.3 bits (168), Expect = 8e-12
 Identities = 31/70 (44%), Positives = 43/70 (61%)
 Frame = -1

Query: 581 AYRIRITNNSQRAVQLLRRHWIVTDANGRTENVWGVGVVGEQPVIFPKTGFEYSSACPLN 402
           AY I I N  +   QL+ RHW++TDA    + V G+GVVG QP++ P   FEY+S   + 
Sbjct: 29  AYTITIRNTGEVPSQLVSRHWVITDAESHVQEVAGLGVVGHQPLLPPGESFEYTSWATIK 88

Query: 401 TPNGRMEGDF 372
           TP G M G++
Sbjct: 89  TPVGTMRGEY 98

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>APAG_PHOPR (Q6LV42) Protein apaG|
          Length = 127

 Score = 68.2 bits (165), Expect = 2e-11
 Identities = 37/94 (39%), Positives = 54/94 (57%)
 Frame = -1

Query: 581 AYRIRITNNSQRAVQLLRRHWIVTDANGRTENVWGVGVVGEQPVIFPKTGFEYSSACPLN 402
           +Y I I N  + + +LL R+W++TDANG+   + G GVVGEQP I     + Y+S   + 
Sbjct: 32  SYTITIRNLGKGSAKLLSRYWLITDANGKRLVIEGEGVVGEQPEIKMNEEYTYTSGTIIE 91

Query: 401 TPNGRMEGDFEMKHIDKVGSSTFNIAIAPFSLSI 300
           TP G M+G + M   D     TF   ++PF L+I
Sbjct: 92  TPLGVMQGHYVMGTED---GETFKAEVSPFRLAI 122

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>APAG_DEIRA (Q9RXS8) Protein apaG|
          Length = 128

 Score = 67.0 bits (162), Expect = 4e-11
 Identities = 37/100 (37%), Positives = 53/100 (53%)
 Frame = -1

Query: 581 AYRIRITNNSQRAVQLLRRHWIVTDANGRTENVWGVGVVGEQPVIFPKTGFEYSSACPLN 402
           AY I I NN+  + +LL RHW +T  +G+   V G GVVGEQP++ P   + Y+S   ++
Sbjct: 28  AYFITIENNTDDSWKLLSRHWTITSGDGQQFTVEGEGVVGEQPLLAPGAQYTYNSFVTVD 87

Query: 401 TPNGRMEGDFEMKHIDKVGSSTFNIAIAPFSLSILGDDND 282
              GRMEG + M         T  + I PF L I  +  +
Sbjct: 88  ALPGRMEGHYVM---GDAWGQTAQVPIPPFRLDIAPESGE 124

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>FBX3_HUMAN (Q9UK99) F-box only protein 3|
          Length = 471

 Score = 63.9 bits (154), Expect = 3e-10
 Identities = 38/96 (39%), Positives = 53/96 (55%), Gaps = 4/96 (4%)
 Frame = -1

Query: 578 YRIRITNNS----QRAVQLLRRHWIVTDANGRTENVWGVGVVGEQPVIFPKTGFEYSSAC 411
           YRIRI  +     ++A QL  R+W +T+A G  E V G GVVGE P+I P   +EY+S  
Sbjct: 308 YRIRIEMSKDALPEKACQLDSRYWRITNAKGDVEEVQGPGVVGEFPIISPGRVYEYTSCT 367

Query: 410 PLNTPNGRMEGDFEMKHIDKVGSSTFNIAIAPFSLS 303
             +T +G MEG +   H        FN+AI  F ++
Sbjct: 368 TFSTTSGYMEGYYTF-HFLYFKDKIFNVAIPRFHMA 402

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>PDIP2_MOUSE (Q91VA6) Polymerase delta-interacting protein 2|
          Length = 368

 Score = 63.9 bits (154), Expect = 3e-10
 Identities = 39/102 (38%), Positives = 51/102 (50%), Gaps = 1/102 (0%)
 Frame = -1

Query: 578 YRIRITNNSQRAVQLLRRHWIVTDANGRTENVWGVGVVGEQPVIF-PKTGFEYSSACPLN 402
           Y IR+ N     VQL  RHW +   +G  E V G GVVG +PV+   +  F+YSS   L 
Sbjct: 265 YCIRLENLDSDVVQLRERHWRIFSLSGTLETVRGRGVVGREPVLSKEQPAFQYSSHVSLQ 324

Query: 401 TPNGRMEGDFEMKHIDKVGSSTFNIAIAPFSLSILGDDNDAP 276
             +G M G F  +  D    S F++ I PFSL    D+   P
Sbjct: 325 ASSGHMWGTFRFERPD---GSHFDVRIPPFSLESNKDEKTPP 363

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>PDIP2_HUMAN (Q9Y2S7) Polymerase delta-interacting protein 2 (38 kDa DNA|
           polymerase delta interaction protein) (p38)
          Length = 368

 Score = 63.9 bits (154), Expect = 3e-10
 Identities = 39/102 (38%), Positives = 51/102 (50%), Gaps = 1/102 (0%)
 Frame = -1

Query: 578 YRIRITNNSQRAVQLLRRHWIVTDANGRTENVWGVGVVGEQPVIF-PKTGFEYSSACPLN 402
           Y IR+ N     VQL  RHW +   +G  E V G GVVG +PV+   +  F+YSS   L 
Sbjct: 265 YCIRLENLDSDVVQLRERHWRIFSLSGTLETVRGRGVVGREPVLSKEQPAFQYSSHVSLQ 324

Query: 401 TPNGRMEGDFEMKHIDKVGSSTFNIAIAPFSLSILGDDNDAP 276
             +G M G F  +  D    S F++ I PFSL    D+   P
Sbjct: 325 ASSGHMWGTFRFERPD---GSHFDVRIPPFSLESNKDEKTPP 363

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>FBX3_MOUSE (Q9DC63) F-box only protein 3|
          Length = 480

 Score = 63.5 bits (153), Expect = 4e-10
 Identities = 38/96 (39%), Positives = 53/96 (55%), Gaps = 4/96 (4%)
 Frame = -1

Query: 578 YRIRITNNS----QRAVQLLRRHWIVTDANGRTENVWGVGVVGEQPVIFPKTGFEYSSAC 411
           YRIRI  +     ++A QL  R+W +T+A G  E V G GVVGE P+I P   +EY+S  
Sbjct: 308 YRIRIEMSRDALPEKACQLDSRYWRITNAKGDVEEVQGPGVVGEFPIISPGRIYEYTSCT 367

Query: 410 PLNTPNGRMEGDFEMKHIDKVGSSTFNIAIAPFSLS 303
             +T +G MEG +   H        FN+AI  F ++
Sbjct: 368 TFSTTSGYMEGYYTF-HFLYFKDKVFNVAIPRFHMA 402

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>DPOL_THEAG (O33845) DNA polymerase (EC 2.7.7.7) (Pol Tfu) [Contains: Tag pol-1|
            intein (Tsp-TY pol-1) (Intein I); Tag pol-2 intein
            (Tsp-TY pol-2) (Intein II); Tag pol-3 intein (Tsp-TY
            pol-3) (Intein III)]
          Length = 1829

 Score = 32.0 bits (71), Expect = 1.3
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = -1

Query: 581  AYRIRITNNSQRAVQLLRRHWIVTDANGRTENVWGVGVVGEQPVIFPK 438
            AY + +  NS R + + R H + T  NG+ + +WG  V     +I PK
Sbjct: 933  AYEVEL--NSGRKIHITRGHSLFTIRNGKIKEIWGEEVKVGDLIIVPK 978

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>RUMB_VIBCH (Q9KL20) 23S rRNA (uracil-5-)-methyltransferase rumB (EC 2.1.1.-)|
           (23S rRNA(M-5-U747)-methyltransferase)
          Length = 375

 Score = 30.0 bits (66), Expect = 5.0
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +3

Query: 438 LWEYYRLLSHYTNTPNILCPSIRIGDNPVSSEKLYSTLR 554
           L E   LL H+ + P ++ P      NP  +E+LY+T R
Sbjct: 188 LTETQSLLEHFNDVPMVIRPKSFFQTNPKVAEQLYATAR 226

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>CYB_INIGE (Q9G7U1) Cytochrome b|
          Length = 379

 Score = 29.6 bits (65), Expect = 6.6
 Identities = 19/64 (29%), Positives = 35/64 (54%)
 Frame = +3

Query: 48  IAHKLTRTVLIPYLPRHLHHSYLTLFFFIVDITSVRTMFHALNTSLTTLTMFVYLCKLLL 227
           +AH + R V   +L R+LH +  ++FF  + I   R +++  +TS  T  + V L  +++
Sbjct: 66  VAH-ICRDVNYGWLIRYLHANGASMFFICLYIHIGRGLYYGSHTSQETWNIGVLLLLMVM 124

Query: 228 ALPF 239
           A  F
Sbjct: 125 ATAF 128

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>VP26_VZVD (P09279) Capsid protein VP26|
          Length = 235

 Score = 29.6 bits (65), Expect = 6.6
 Identities = 18/55 (32%), Positives = 23/55 (41%)
 Frame = +1

Query: 328 ILNVEDPTLSMCFISKSPSILPFGVFSGHADEYSKPVFGNITGCSPTTPTPQTFS 492
           I+  + P  SM      P+ILP    S       +P     +G SP  P PQT S
Sbjct: 106 IIRPQPPNPSMSLGISGPTILPQKTQSADQSALQQPAALAFSGSSPQHPPPQTTS 160

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>HUNB_MUSDO (Q01778) Protein hunchback|
          Length = 817

 Score = 29.3 bits (64), Expect = 8.6
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +2

Query: 464 PLHQHPKHSLSFHSHR*QSSVV*EAVQHVENYL 562
           P HQHP+   S  + + Q S +  +  H+ENYL
Sbjct: 56  PHHQHPQQHSSMMASQPQHSPLTHSANHLENYL 88


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,915,992
Number of Sequences: 219361
Number of extensions: 1899208
Number of successful extensions: 5957
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 5738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5953
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4986986160
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result