Clone Name | rbasd20g24 |
---|---|
Clone Library Name | barley_pub |
>dbj|AK068085.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013131P13, full insert sequence Length = 1515 Score = 319 bits (161), Expect = 6e-84 Identities = 251/281 (89%) Strand = Plus / Minus Query: 298 aggattgacagagagaatggtgcgatggcgatattgaatgttgaggatccaaccttgtca 357 ||||||||||||||||||||||| || |||| ||||||| | || || ||| | ||||| Sbjct: 1051 aggattgacagagagaatggtgcaattgcgacattgaatatagacgacccagctttgtcg 992 Query: 358 atgtgcttcatctcaaaatctccttccattctcccatttggcgtgtttagtgggcatgca 417 |||||||||||||||||||| |||||||||||||||||||| ||||||| |||||||||| Sbjct: 991 atgtgcttcatctcaaaatcaccttccattctcccatttggtgtgtttaatgggcatgca 932 Query: 418 gatgagtactcaaaaccagtctttgggaatattacaggttgctctcccactacaccaaca 477 ||||||||||||||||||||| |||| ||||| ||||||||||||||||| ||||| ||| Sbjct: 931 gatgagtactcaaaaccagtccttggaaatatgacaggttgctctcccacaacacctaca 872 Query: 478 ccccaaacattctctgtccttccattcgcatcggtgacaatccagtgtcgtctgagaagc 537 ||||||| ||||| ||||||||||| ||||| ||||||||||| |||| |||||||||| Sbjct: 871 ccccaaatgttctccgtccttccatttgcatcagtgacaatccaatgtcttctgagaagc 812 Query: 538 tgtacagcacgttgagaattatttgtaattctgattctgta 578 || |||| || |||||||||||||| |||||||||||||| Sbjct: 811 tgaacagggcgctgagaattatttgtgattctgattctgta 771
>gb|AC087553.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0685E10, complete sequence Length = 156772 Score = 141 bits (71), Expect = 3e-30 Identities = 92/99 (92%) Strand = Plus / Plus Query: 383 ccattctcccatttggcgtgtttagtgggcatgcagatgagtactcaaaaccagtctttg 442 |||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| ||| Sbjct: 71838 ccattctcccatttggtgtgtttaatgggcatgcagatgagtactcaaaaccagtccttg 71897 Query: 443 ggaatattacaggttgctctcccactacaccaacacccc 481 | ||||| ||||||||||||||||| ||||| ||||||| Sbjct: 71898 gaaatatgacaggttgctctcccacaacacctacacccc 71936 Score = 103 bits (52), Expect = 6e-19 Identities = 82/92 (89%) Strand = Plus / Plus Query: 487 ttctctgtccttccattcgcatcggtgacaatccagtgtcgtctgagaagctgtacagca 546 ||||| ||||||||||| ||||| ||||||||||| |||| |||||||||||| |||| Sbjct: 72022 ttctccgtccttccatttgcatcagtgacaatccaatgtcttctgagaagctgaacaggg 72081 Query: 547 cgttgagaattatttgtaattctgattctgta 578 || |||||||||||||| |||||||||||||| Sbjct: 72082 cgctgagaattatttgtgattctgattctgta 72113 Score = 93.7 bits (47), Expect = 6e-16 Identities = 77/87 (88%) Strand = Plus / Plus Query: 298 aggattgacagagagaatggtgcgatggcgatattgaatgttgaggatccaaccttgtca 357 ||||||||||||||||||||||| || |||| ||||||||| || || ||| | ||||| Sbjct: 71442 aggattgacagagagaatggtgcaattgcgacattgaatgtagacgacccagctttgtcg 71501 Query: 358 atgtgcttcatctcaaaatctccttcc 384 |||||||||||||||||||| |||||| Sbjct: 71502 atgtgcttcatctcaaaatcaccttcc 71528
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 141 bits (71), Expect = 3e-30 Identities = 92/99 (92%) Strand = Plus / Plus Query: 383 ccattctcccatttggcgtgtttagtgggcatgcagatgagtactcaaaaccagtctttg 442 |||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| ||| Sbjct: 4185359 ccattctcccatttggtgtgtttaatgggcatgcagatgagtactcaaaaccagtccttg 4185418 Query: 443 ggaatattacaggttgctctcccactacaccaacacccc 481 | ||||| ||||||||||||||||| ||||| ||||||| Sbjct: 4185419 gaaatatgacaggttgctctcccacaacacctacacccc 4185457 Score = 103 bits (52), Expect = 6e-19 Identities = 82/92 (89%) Strand = Plus / Plus Query: 487 ttctctgtccttccattcgcatcggtgacaatccagtgtcgtctgagaagctgtacagca 546 ||||| ||||||||||| ||||| ||||||||||| |||| |||||||||||| |||| Sbjct: 4185543 ttctccgtccttccatttgcatcagtgacaatccaatgtcttctgagaagctgaacaggg 4185602 Query: 547 cgttgagaattatttgtaattctgattctgta 578 || |||||||||||||| |||||||||||||| Sbjct: 4185603 cgctgagaattatttgtgattctgattctgta 4185634 Score = 93.7 bits (47), Expect = 6e-16 Identities = 77/87 (88%) Strand = Plus / Plus Query: 298 aggattgacagagagaatggtgcgatggcgatattgaatgttgaggatccaaccttgtca 357 ||||||||||||||||||||||| || |||| ||||||||| || || ||| | ||||| Sbjct: 4184963 aggattgacagagagaatggtgcaattgcgacattgaatgtagacgacccagctttgtcg 4185022 Query: 358 atgtgcttcatctcaaaatctccttcc 384 |||||||||||||||||||| |||||| Sbjct: 4185023 atgtgcttcatctcaaaatcaccttcc 4185049
>emb|AL355075.6|CNS05TC9 Human chromosome 14 DNA sequence BAC R-203M5 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 204654 Score = 50.1 bits (25), Expect = 0.008 Identities = 28/29 (96%) Strand = Plus / Minus Query: 509 cggtgacaatccagtgtcgtctgagaagc 537 |||||||||||||||||| |||||||||| Sbjct: 74830 cggtgacaatccagtgtcctctgagaagc 74802
>emb|AL606537.10| Human DNA sequence from clone RP11-53A1 on chromosome 1 Contains the 3' end of the PROX1 gene for prospero-related homeobox protein 1, complete sequence Length = 116821 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Minus Query: 375 atctccttccattctcccattt 396 |||||||||||||||||||||| Sbjct: 111799 atctccttccattctcccattt 111778
>emb|AL138889.9| Human DNA sequence from clone RP3-468B3 on chromosome 6 Contains the 5' end of the MLN gene for motilin, part of a novel gene and a CpG island, complete sequence Length = 136886 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 375 atctccttccattctcccatttggc 399 |||||| |||||||||||||||||| Sbjct: 20389 atctccctccattctcccatttggc 20365
>emb|AL611951.11| Mouse DNA sequence from clone RP23-265O1 on chromosome 13 Contains a novel gene, complete sequence Length = 191715 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 372 aaaatctccttccattctccc 392 ||||||||||||||||||||| Sbjct: 166812 aaaatctccttccattctccc 166792
>gb|AC113450.20| Mus musculus chromosome 7, clone RP24-360B13, complete sequence Length = 127454 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 559 tttgtaattctgattctgta 578 |||||||||||||||||||| Sbjct: 56392 tttgtaattctgattctgta 56373
>gb|AC166316.2| Mus musculus chromosome 19, clone RP23-466L5, complete sequence Length = 185237 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 449 ttacaggttgctctcccact 468 |||||||||||||||||||| Sbjct: 166584 ttacaggttgctctcccact 166565
>gb|CP000002.2| Bacillus licheniformis ATCC 14580, complete genome Length = 4222334 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 64 caagaaccgtgttaattcca 83 |||||||||||||||||||| Sbjct: 3441467 caagaaccgtgttaattcca 3441486
>gb|AC110913.13| Mus musculus chromosome 19, clone RP24-399E19, complete sequence Length = 208309 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 449 ttacaggttgctctcccact 468 |||||||||||||||||||| Sbjct: 184597 ttacaggttgctctcccact 184616
>gb|AC166748.3| Mus musculus chromosome 19, clone RP23-345M21, complete sequence Length = 178257 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 449 ttacaggttgctctcccact 468 |||||||||||||||||||| Sbjct: 115850 ttacaggttgctctcccact 115831
>gb|AE017333.1| Bacillus licheniformis DSM 13, complete genome Length = 4222645 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 64 caagaaccgtgttaattcca 83 |||||||||||||||||||| Sbjct: 3441640 caagaaccgtgttaattcca 3441659
>gb|AC162285.6| Mus musculus chromosome 7, clone RP23-312O8, complete sequence Length = 190344 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 559 tttgtaattctgattctgta 578 |||||||||||||||||||| Sbjct: 74531 tttgtaattctgattctgta 74512
>ref|XM_854396.1| PREDICTED: Canis familiaris similar to hydroxyacyl dehydrogenase, subunit A, transcript variant 3 (LOC475687), mRNA Length = 2814 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 481 caaacattctctgtccttcc 500 |||||||||||||||||||| Sbjct: 539 caaacattctctgtccttcc 520
>ref|XM_532894.2| PREDICTED: Canis familiaris similar to hydroxyacyl dehydrogenase, subunit A, transcript variant 2 (LOC475687), mRNA Length = 2817 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 481 caaacattctctgtccttcc 500 |||||||||||||||||||| Sbjct: 539 caaacattctctgtccttcc 520
>gb|AC123877.5| Mus musculus BAC clone RP23-297J18 from chromosome 5, complete sequence Length = 183152 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 371 caaaatctccttccattctc 390 |||||||||||||||||||| Sbjct: 34321 caaaatctccttccattctc 34302
>gb|AC125542.4| Mus musculus BAC clone RP23-321C24 from chromosome 5, complete sequence Length = 194326 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 371 caaaatctccttccattctc 390 |||||||||||||||||||| Sbjct: 134268 caaaatctccttccattctc 134287
>gb|AC149269.11| Medicago truncatula clone mth2-102b19, complete sequence Length = 128294 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 548 gttgagaattatttgtaatt 567 |||||||||||||||||||| Sbjct: 28000 gttgagaattatttgtaatt 28019
>gb|CP000087.1| Rickettsia bellii RML369-C, complete genome Length = 1522076 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 554 aattatttgtaattctgatt 573 |||||||||||||||||||| Sbjct: 69682 aattatttgtaattctgatt 69663
>gb|AC152426.10| Mus musculus chromosome 19, clone RP23-216E17, complete sequence Length = 217738 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 449 ttacaggttgctctcccact 468 |||||||||||||||||||| Sbjct: 143042 ttacaggttgctctcccact 143061
>gb|AC105225.5| Homo sapiens chromosome 8, clone RP11-775E18, complete sequence Length = 135609 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 374 aatctccttccattctccca 393 |||||||||||||||||||| Sbjct: 3923 aatctccttccattctccca 3904
>gb|AC144578.2| Homo sapiens chromosome 8, clone XXfos-802716D4, complete sequence Length = 38207 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 374 aatctccttccattctccca 393 |||||||||||||||||||| Sbjct: 17158 aatctccttccattctccca 17139
>gb|AC117829.7| Mus musculus chromosome 19, clone RP24-95D15, complete sequence Length = 168084 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 449 ttacaggttgctctcccact 468 |||||||||||||||||||| Sbjct: 124617 ttacaggttgctctcccact 124636
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 534 aagctgtacagcacgttgagaatt 557 ||||||||||||||||||| |||| Sbjct: 24642698 aagctgtacagcacgttgaaaatt 24642721
>gb|AC135075.5| Homo sapiens chromosome 8, clone RP11-557G24, complete sequence Length = 72016 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 374 aatctccttccattctccca 393 |||||||||||||||||||| Sbjct: 16448 aatctccttccattctccca 16429
>dbj|AP003539.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0040H10 Length = 173301 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 534 aagctgtacagcacgttgagaatt 557 ||||||||||||||||||| |||| Sbjct: 125891 aagctgtacagcacgttgaaaatt 125914
>emb|CR786562.6| Zebrafish DNA sequence from clone CH211-244H7 in linkage group 18, complete sequence Length = 144824 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 198 atgtttgtgtatttgtgcaa 217 |||||||||||||||||||| Sbjct: 133158 atgtttgtgtatttgtgcaa 133177
>emb|BX927076.9| Zebrafish DNA sequence from clone CH211-241L24 in linkage group 18, complete sequence Length = 152951 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 198 atgtttgtgtatttgtgcaa 217 |||||||||||||||||||| Sbjct: 6453 atgtttgtgtatttgtgcaa 6434
>dbj|AP002856.4| Homo sapiens genomic DNA, chromosome 11 clone:RP11-816H13, complete sequence Length = 227942 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 378 tccttccattctcccatttg 397 |||||||||||||||||||| Sbjct: 100072 tccttccattctcccatttg 100053
>gb|AC138460.4| Mus musculus BAC clone RP23-295A7 from 8, complete sequence Length = 186258 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 430 aaaccagtctttgggaatat 449 |||||||||||||||||||| Sbjct: 160611 aaaccagtctttgggaatat 160630
>gb|AE017262.2| Listeria monocytogenes str. 4b F2365, complete genome Length = 2905187 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 169 ctctaaatacttctctaaca 188 |||||||||||||||||||| Sbjct: 2017308 ctctaaatacttctctaaca 2017327
>gb|AC154758.2| Mus musculus BAC clone RP24-406J8 from chromosome 17, complete sequence Length = 151012 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 435 agtctttgggaatattacag 454 |||||||||||||||||||| Sbjct: 41641 agtctttgggaatattacag 41660
>gb|AC122119.11| Mus musculus chromosome 19, clone RP24-252F4, complete sequence Length = 183160 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 449 ttacaggttgctctcccact 468 |||||||||||||||||||| Sbjct: 1838 ttacaggttgctctcccact 1857
>gb|AC163288.4| Mus musculus BAC clone RP23-279M5 from chromosome 8, complete sequence Length = 222867 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 430 aaaccagtctttgggaatat 449 |||||||||||||||||||| Sbjct: 40268 aaaccagtctttgggaatat 40287 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,474,414 Number of Sequences: 3902068 Number of extensions: 5474414 Number of successful extensions: 109004 Number of sequences better than 10.0: 36 Number of HSP's better than 10.0 without gapping: 36 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 108787 Number of HSP's gapped (non-prelim): 217 length of query: 581 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 558 effective length of database: 17,143,297,704 effective search space: 9565960118832 effective search space used: 9565960118832 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)