ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd20g23
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_463780.1| Oryza sativa (japonica cultivar-group), mRNA 228 1e-56
2dbj|AK105706.1| Oryza sativa (japonica cultivar-group) cDNA clon... 228 1e-56
3gb|BT019325.1| Zea mays clone Contig1034.F mRNA sequence 151 3e-33
4gb|AY103840.1| Zea mays PCO125096 mRNA sequence 137 4e-29
5dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 129 1e-26
6dbj|AP005873.3| Oryza sativa (japonica cultivar-group) genomic D... 129 1e-26
7dbj|AP004187.3| Oryza sativa (japonica cultivar-group) genomic D... 129 1e-26
8ref|NM_120021.2| Arabidopsis thaliana KAK (KAKTUS) AT4G38600 (KA... 70 8e-09
9ref|NM_179236.2| Arabidopsis thaliana KAK (KAKTUS) AT4G38600 (KA... 70 8e-09
10gb|AY265959.1| Arabidopsis thaliana HECT ubiquitin-protein ligas... 70 8e-09
11tpe|BN000268.1|ATH000268 TPA: TPA_exp: Arabidopsis thaliana mRNA... 70 8e-09
12emb|AL161593.2|ATCHRIV89 Arabidopsis thaliana DNA chromosome 4, ... 66 1e-07
13gb|AC069558.5|AC069558 Genomic Sequence For Arabidopsis thaliana... 66 1e-07
14gb|AC069327.7|AC069327 Genomic Sequence For Arabidopsis thaliana... 66 1e-07
15emb|AL035540.1|ATF20M13 Arabidopsis thaliana DNA chromosome 4, B... 66 1e-07
16gb|AC121235.20| Medicago truncatula clone mth2-21k24, complete s... 54 5e-04
17gb|U76747.1|TAU76747 Triticum aestivum Tap mRNA, partial cds 54 5e-04
18ref|XM_460177.1| Debaryomyces hansenii CBS767 hypothetical prote... 46 0.12
19emb|CR382137.1| Debaryomyces hansenii chromosome E of strain CBS... 46 0.12
20emb|BX004819.11| Zebrafish DNA sequence from clone CH211-208B16 ... 46 0.12
21gb|AC095247.5| Rattus norvegicus 4 BAC CH230-10C6 (Children's Ho... 42 1.8
22gb|AC087066.3| Rattus norvegicus strain Brown Norway clone RP31-... 42 1.8
23gb|AC121216.4| Rattus norvegicus 4 CH230-220A21 (Children's Hosp... 42 1.8
24gb|AC159277.3| Mus musculus BAC clone RP23-356J2 from chromosome... 42 1.8
25dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.8
26gb|DP000027.1| Rattus norvegicus target 1 genomic scaffold 42 1.8
27dbj|AB008921.2| Mus musculus mGpi1 gene, complete cds 42 1.8
28dbj|AP004730.2| Oryza sativa (japonica cultivar-group) genomic D... 42 1.8
29dbj|AP004328.2| Oryza sativa (japonica cultivar-group) genomic D... 42 1.8
30gb|AY682109.1| Chlamys farreri clone CFSSR0334 microsatellite se... 40 7.2
31gb|AC124963.32| Medicago truncatula clone mth2-24f5, complete se... 40 7.2
32emb|AL035555.11|HS217P22 Human DNA sequence from clone RP1-217P2... 40 7.2
33emb|AL023284.1|HS406A7 Human DNA sequence from clone RP3-406A7 o... 40 7.2
34emb|BX950851.1| Erwinia carotovora subsp. atroseptica SCRI1043, ... 40 7.2
35emb|AL031173.1|DMSEG0001 Drosophila melanogaster sequence EG0001... 40 7.2
36emb|BX470259.9| Zebrafish DNA sequence from clone CH211-225N18 i... 40 7.2
37gb|AC105774.8| Drosophila melanogaster X BAC RP98-8O5 (Roswell P... 40 7.2
38emb|BX571943.8| Zebrafish DNA sequence from clone DKEY-159C24 in... 40 7.2
39gb|AC009385.8| Drosophila melanogaster 3L BAC RP98-23M20 (Roswel... 40 7.2
40gb|AC022402.5| Homo sapiens chromosome 06 clone RP11-70I3, compl... 40 7.2
41emb|BX000702.11| Zebrafish DNA sequence from clone CH211-160D19 ... 40 7.2
42gb|AC116340.3| Homo sapiens chromosome 5 clone RP11-118I21, comp... 40 7.2
43gb|AC069240.23| Homo sapiens 12 BAC RP11-385N17 (Roswell Park Ca... 40 7.2
44gb|AE003520.4| Drosophila melanogaster chromosome 3L, section 65... 40 7.2
45gb|AE003417.4| Drosophila melanogaster chromosome X, section 1 o... 40 7.2
46gb|AC155338.1| Brassica rapa subsp. pekinensis chromosome Cytoge... 40 7.2 
>ref|XM_463780.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 5346

 Score =  228 bits (115), Expect = 1e-56
 Identities = 250/295 (84%)
 Strand = Plus / Minus

                                                                        
Query: 238  gcataaagcagcttcttgtgcataacttcctttgtcgagtatggcggaagtttaagatag 297
            ||||||||||  |||||| |||| ||||| ||||| |||||||| || | ||||||||| 
Sbjct: 5309 gcataaagcaatttcttgcgcatcacttcttttgtggagtatggaggcaatttaagataa 5250

                                                                        
Query: 298  ttggcacaagtcatgacgctaggcagatcatcatcagcagactctgctgctccagctgca 357
            || ||||| ||||| || || |||||||||||||| ||||||||||   |||||||   |
Sbjct: 5249 ttagcacatgtcataacacttggcagatcatcatctgcagactctgtaactccagcgata 5190

                                                                        
Query: 358  tttgaagtattcgtcgcagtcgaggagtgcttcctaacgatagtcagcttcggatttagg 417
            ||||||||||||  |||| | |||| |||||||||||| ||||| ||||| ||||| |||
Sbjct: 5189 tttgaagtattcaccgcacttgaggggtgcttcctaactatagtaagcttgggattaagg 5130

                                                                        
Query: 418  gaggctaagccaccaggtggaagccgaggagcaccagtcacaaactggcagaaagcatgt 477
            |  ||||| |||||||| |||||||||||||||||||| |||||||||||||| ||||||
Sbjct: 5129 gcagctaaaccaccaggcggaagccgaggagcaccagttacaaactggcagaatgcatgt 5070

                                                                   
Query: 478  tgttgctccggagtaaattccgtcatgatctcaagtagattgacaattgctggac 532
            |||||||| || || ||||| | ||||||||| |||||||| |||||||| ||||
Sbjct: 5069 tgttgctctggggtgaattcagccatgatctcgagtagatttacaattgcaggac 5015
to top
>dbj|AK105706.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-201-E03, full
            insert sequence
          Length = 2561

 Score =  228 bits (115), Expect = 1e-56
 Identities = 250/295 (84%)
 Strand = Plus / Minus

                                                                        
Query: 238  gcataaagcagcttcttgtgcataacttcctttgtcgagtatggcggaagtttaagatag 297
            ||||||||||  |||||| |||| ||||| ||||| |||||||| || | ||||||||| 
Sbjct: 2120 gcataaagcaatttcttgcgcatcacttcttttgtggagtatggaggcaatttaagataa 2061

                                                                        
Query: 298  ttggcacaagtcatgacgctaggcagatcatcatcagcagactctgctgctccagctgca 357
            || ||||| ||||| || || |||||||||||||| ||||||||||   |||||||   |
Sbjct: 2060 ttagcacatgtcataacacttggcagatcatcatctgcagactctgtaactccagcgata 2001

                                                                        
Query: 358  tttgaagtattcgtcgcagtcgaggagtgcttcctaacgatagtcagcttcggatttagg 417
            ||||||||||||  |||| | |||| |||||||||||| ||||| ||||| ||||| |||
Sbjct: 2000 tttgaagtattcaccgcacttgaggggtgcttcctaactatagtaagcttgggattaagg 1941

                                                                        
Query: 418  gaggctaagccaccaggtggaagccgaggagcaccagtcacaaactggcagaaagcatgt 477
            |  ||||| |||||||| |||||||||||||||||||| |||||||||||||| ||||||
Sbjct: 1940 gcagctaaaccaccaggcggaagccgaggagcaccagttacaaactggcagaatgcatgt 1881

                                                                   
Query: 478  tgttgctccggagtaaattccgtcatgatctcaagtagattgacaattgctggac 532
            |||||||| || || ||||| | ||||||||| |||||||| |||||||| ||||
Sbjct: 1880 tgttgctctggggtgaattcagccatgatctcgagtagatttacaattgcaggac 1826
to top
>gb|BT019325.1| Zea mays clone Contig1034.F mRNA sequence
          Length = 494

 Score =  151 bits (76), Expect = 3e-33
 Identities = 142/164 (86%)
 Strand = Plus / Minus

                                                                       
Query: 205 gaaagatcaaacgacccctggccttcgttgatagcataaagcagcttcttgtgcataact 264
           ||||||||||| ||||| |||||||||||||| ||||||||||| |||||  |||| |  
Sbjct: 241 gaaagatcaaatgacccttggccttcgttgatcgcataaagcagtttctttagcatgata 182

                                                                       
Query: 265 tcctttgtcgagtatggcggaagtttaagatagttggcacaagtcatgacgctaggcaga 324
            |||| || |||||||| || ||||||||||||||||| ||||||||||| ||||||| |
Sbjct: 181 gccttggtggagtatggtggtagtttaagatagttggcgcaagtcatgacactaggcaaa 122

                                                       
Query: 325 tcatcatcagcagactctgctgctccagctgcatttgaagtatt 368
           |||||||| ||||||||||  ||||||| |||||||||| ||||
Sbjct: 121 tcatcatctgcagactctgtcgctccagttgcatttgaattatt 78
to top
>gb|AY103840.1| Zea mays PCO125096 mRNA sequence
          Length = 1983

 Score =  137 bits (69), Expect = 4e-29
 Identities = 255/317 (80%)
 Strand = Plus / Minus

                                                                        
Query: 202  tatgaaagatcaaacgacccctggccttcgttgatagcataaagcagcttcttgtgcata 261
            |||||||||||||| || ||  |||||||   ||| |||||||||| ||||||| |||| 
Sbjct: 1842 tatgaaagatcaaatgatcctcggccttccaggatcgcataaagcaacttcttgcgcatg 1783

                                                                        
Query: 262  acttcctttgtcgagtatggcggaagtttaagatagttggcacaagtcatgacgctaggc 321
            | ||| ||||| ||||| || || || || ||||| ||||| || ||||| || ||||||
Sbjct: 1782 atttcttttgtggagtaggggggcagcttcagataattggcgcacgtcatcacactaggc 1723

                                                                        
Query: 322  agatcatcatcagcagactctgctgctccagctgcatttgaagtattcgtcgcagtcgag 381
            | |||||||||||| |||||| |||| |||| || |||||||||||||   ||| | || 
Sbjct: 1722 aaatcatcatcagcggactctactgccccagttgaatttgaagtattcacagcacttgaa 1663

                                                                        
Query: 382  gagtgcttcctaacgatagtcagcttcggatttagggaggctaagccaccaggtggaagc 441
            |  ||||||||||| ||||| ||||| ||  | ||||  || || |||||| ||||||||
Sbjct: 1662 ggatgcttcctaactatagtaagcttggggctaagggcagccaatccaccatgtggaagc 1603

                                                                        
Query: 442  cgaggagcaccagtcacaaactggcagaaagcatgttgttgctccggagtaaattccgtc 501
            ||||||||||| || |||||||||||||| ||||| || ||||| || || ||||| | |
Sbjct: 1602 cgaggagcaccggttacaaactggcagaacgcatgctgctgctcaggggtgaattctgac 1543

                             
Query: 502  atgatctcaagtagatt 518
            |  ||||| ||||||||
Sbjct: 1542 aaaatctcgagtagatt 1526
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2,
             complete sequence
          Length = 35954743

 Score =  129 bits (65), Expect = 1e-26
 Identities = 113/129 (87%)
 Strand = Plus / Plus

                                                                         
Query: 387   cttcctaacgatagtcagcttcggatttagggaggctaagccaccaggtggaagccgagg 446
             ||||||||| ||||| ||||| ||||| ||||  ||||| |||||||| |||||||||||
Sbjct: 87593 cttcctaactatagtaagcttgggattaagggcagctaaaccaccaggcggaagccgagg 87652

                                                                         
Query: 447   agcaccagtcacaaactggcagaaagcatgttgttgctccggagtaaattccgtcatgat 506
             ||||||||| |||||||||||||| |||||||||||||| || || ||||| | ||||||
Sbjct: 87653 agcaccagttacaaactggcagaatgcatgttgttgctctggggtgaattcagccatgat 87712

                      
Query: 507   ctcaagtag 515
             ||| |||||
Sbjct: 87713 ctcgagtag 87721



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 85/102 (83%)
 Strand = Plus / Plus

                                                                         
Query: 268   tttgtcgagtatggcggaagtttaagatagttggcacaagtcatgacgctaggcagatca 327
             ||||| |||||||| || | ||||||||| || ||||| ||||| || || |||||||||
Sbjct: 87377 tttgtggagtatggaggcaatttaagataattagcacatgtcataacacttggcagatca 87436

                                                       
Query: 328   tcatcagcagactctgctgctccagctgcatttgaagtattc 369
             ||||| ||||||||||   |||||||   |||||||||||||
Sbjct: 87437 tcatctgcagactctgtaactccagcgatatttgaagtattc 87478
to top
>dbj|AP005873.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:B1370C05
          Length = 148271

 Score =  129 bits (65), Expect = 1e-26
 Identities = 113/129 (87%)
 Strand = Plus / Plus

                                                                         
Query: 387   cttcctaacgatagtcagcttcggatttagggaggctaagccaccaggtggaagccgagg 446
             ||||||||| ||||| ||||| ||||| ||||  ||||| |||||||| |||||||||||
Sbjct: 82202 cttcctaactatagtaagcttgggattaagggcagctaaaccaccaggcggaagccgagg 82261

                                                                         
Query: 447   agcaccagtcacaaactggcagaaagcatgttgttgctccggagtaaattccgtcatgat 506
             ||||||||| |||||||||||||| |||||||||||||| || || ||||| | ||||||
Sbjct: 82262 agcaccagttacaaactggcagaatgcatgttgttgctctggggtgaattcagccatgat 82321

                      
Query: 507   ctcaagtag 515
             ||| |||||
Sbjct: 82322 ctcgagtag 82330



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 85/102 (83%)
 Strand = Plus / Plus

                                                                         
Query: 268   tttgtcgagtatggcggaagtttaagatagttggcacaagtcatgacgctaggcagatca 327
             ||||| |||||||| || | ||||||||| || ||||| ||||| || || |||||||||
Sbjct: 81986 tttgtggagtatggaggcaatttaagataattagcacatgtcataacacttggcagatca 82045

                                                       
Query: 328   tcatcagcagactctgctgctccagctgcatttgaagtattc 369
             ||||| ||||||||||   |||||||   |||||||||||||
Sbjct: 82046 tcatctgcagactctgtaactccagcgatatttgaagtattc 82087
to top
>dbj|AP004187.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1435_F07
          Length = 139041

 Score =  129 bits (65), Expect = 1e-26
 Identities = 113/129 (87%)
 Strand = Plus / Plus

                                                                         
Query: 387   cttcctaacgatagtcagcttcggatttagggaggctaagccaccaggtggaagccgagg 446
             ||||||||| ||||| ||||| ||||| ||||  ||||| |||||||| |||||||||||
Sbjct: 36620 cttcctaactatagtaagcttgggattaagggcagctaaaccaccaggcggaagccgagg 36679

                                                                         
Query: 447   agcaccagtcacaaactggcagaaagcatgttgttgctccggagtaaattccgtcatgat 506
             ||||||||| |||||||||||||| |||||||||||||| || || ||||| | ||||||
Sbjct: 36680 agcaccagttacaaactggcagaatgcatgttgttgctctggggtgaattcagccatgat 36739

                      
Query: 507   ctcaagtag 515
             ||| |||||
Sbjct: 36740 ctcgagtag 36748



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 85/102 (83%)
 Strand = Plus / Plus

                                                                         
Query: 268   tttgtcgagtatggcggaagtttaagatagttggcacaagtcatgacgctaggcagatca 327
             ||||| |||||||| || | ||||||||| || ||||| ||||| || || |||||||||
Sbjct: 36404 tttgtggagtatggaggcaatttaagataattagcacatgtcataacacttggcagatca 36463

                                                       
Query: 328   tcatcagcagactctgctgctccagctgcatttgaagtattc 369
             ||||| ||||||||||   |||||||   |||||||||||||
Sbjct: 36464 tcatctgcagactctgtaactccagcgatatttgaagtattc 36505
to top
>ref|NM_120021.2| Arabidopsis thaliana KAK (KAKTUS) AT4G38600 (KAK) transcript variant
            AT4G38600.2 mRNA, complete cds
          Length = 5954

 Score = 69.9 bits (35), Expect = 8e-09
 Identities = 89/107 (83%)
 Strand = Plus / Minus

                                                                        
Query: 226  ccttcgttgatagcataaagcagcttcttgtgcataacttcctttgtcgagtatggcgga 285
            ||||||||||| || || ||||| ||||||| ||| | ||||||||| || || || || 
Sbjct: 5539 ccttcgttgatggcgtagagcagtttcttgtacatgatttcctttgtagaataaggaggg 5480

                                                           
Query: 286  agtttaagatagttggcacaagtcatgacgctaggcagatcatcatc 332
            |||||||| ||||| || ||||||||||| || |||| |||||||||
Sbjct: 5479 agtttaaggtagtttgcgcaagtcatgacactgggcaaatcatcatc 5433



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 48/53 (90%)
 Strand = Plus / Minus

                                                                 
Query: 421  gctaagccaccaggtggaagccgaggagcaccagtcacaaactggcagaaagc 473
            |||||||||||||| ||||||| |||||| ||||| ||||| |||||||||||
Sbjct: 5344 gctaagccaccaggaggaagcctaggagctccagttacaaattggcagaaagc 5292
to top
>ref|NM_179236.2| Arabidopsis thaliana KAK (KAKTUS) AT4G38600 (KAK) transcript variant
            AT4G38600.1 mRNA, complete cds
          Length = 6139

 Score = 69.9 bits (35), Expect = 8e-09
 Identities = 89/107 (83%)
 Strand = Plus / Minus

                                                                        
Query: 226  ccttcgttgatagcataaagcagcttcttgtgcataacttcctttgtcgagtatggcgga 285
            ||||||||||| || || ||||| ||||||| ||| | ||||||||| || || || || 
Sbjct: 5642 ccttcgttgatggcgtagagcagtttcttgtacatgatttcctttgtagaataaggaggg 5583

                                                           
Query: 286  agtttaagatagttggcacaagtcatgacgctaggcagatcatcatc 332
            |||||||| ||||| || ||||||||||| || |||| |||||||||
Sbjct: 5582 agtttaaggtagtttgcgcaagtcatgacactgggcaaatcatcatc 5536



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 48/53 (90%)
 Strand = Plus / Minus

                                                                 
Query: 421  gctaagccaccaggtggaagccgaggagcaccagtcacaaactggcagaaagc 473
            |||||||||||||| ||||||| |||||| ||||| ||||| |||||||||||
Sbjct: 5447 gctaagccaccaggaggaagcctaggagctccagttacaaattggcagaaagc 5395
to top
>gb|AY265959.1| Arabidopsis thaliana HECT ubiquitin-protein ligase 3 mRNA, complete
            cds
          Length = 6138

 Score = 69.9 bits (35), Expect = 8e-09
 Identities = 89/107 (83%)
 Strand = Plus / Minus

                                                                        
Query: 226  ccttcgttgatagcataaagcagcttcttgtgcataacttcctttgtcgagtatggcgga 285
            ||||||||||| || || ||||| ||||||| ||| | ||||||||| || || || || 
Sbjct: 5642 ccttcgttgatggcgtagagcagtttcttgtacatgatttcctttgtagaataaggaggg 5583

                                                           
Query: 286  agtttaagatagttggcacaagtcatgacgctaggcagatcatcatc 332
            |||||||| ||||| || ||||||||||| || |||| |||||||||
Sbjct: 5582 agtttaaggtagtttgcgcaagtcatgacactgggcaaatcatcatc 5536



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 48/53 (90%)
 Strand = Plus / Minus

                                                                 
Query: 421  gctaagccaccaggtggaagccgaggagcaccagtcacaaactggcagaaagc 473
            |||||||||||||| ||||||| |||||| ||||| ||||| |||||||||||
Sbjct: 5447 gctaagccaccaggaggaagcctaggagctccagttacaaattggcagaaagc 5395
to top
>tpe|BN000268.1|ATH000268 TPA: TPA_exp: Arabidopsis thaliana mRNA for KAKTUS protein (kak gene)
          Length = 6138

 Score = 69.9 bits (35), Expect = 8e-09
 Identities = 89/107 (83%)
 Strand = Plus / Minus

                                                                        
Query: 226  ccttcgttgatagcataaagcagcttcttgtgcataacttcctttgtcgagtatggcgga 285
            ||||||||||| || || ||||| ||||||| ||| | ||||||||| || || || || 
Sbjct: 5642 ccttcgttgatggcgtagagcagtttcttgtacatgatttcctttgtagaataaggaggg 5583

                                                           
Query: 286  agtttaagatagttggcacaagtcatgacgctaggcagatcatcatc 332
            |||||||| ||||| || ||||||||||| || |||| |||||||||
Sbjct: 5582 agtttaaggtagtttgcgcaagtcatgacactgggcaaatcatcatc 5536



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 48/53 (90%)
 Strand = Plus / Minus

                                                                 
Query: 421  gctaagccaccaggtggaagccgaggagcaccagtcacaaactggcagaaagc 473
            |||||||||||||| ||||||| |||||| ||||| ||||| |||||||||||
Sbjct: 5447 gctaagccaccaggaggaagcctaggagctccagttacaaattggcagaaagc 5395
to top
>emb|AL161593.2|ATCHRIV89 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 89
          Length = 199789

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 48/53 (90%)
 Strand = Plus / Plus

                                                                   
Query: 421    gctaagccaccaggtggaagccgaggagcaccagtcacaaactggcagaaagc 473
              |||||||||||||| ||||||| |||||| ||||| ||||| |||||||||||
Sbjct: 150987 gctaagccaccaggaggaagcctaggagctccagttacaaattggcagaaagc 151039



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 41/47 (87%)
 Strand = Plus / Plus

                                                             
Query: 286    agtttaagatagttggcacaagtcatgacgctaggcagatcatcatc 332
              |||||||| ||||| || ||||||||||| || |||| |||||||||
Sbjct: 150612 agtttaaggtagtttgcgcaagtcatgacactgggcaaatcatcatc 150658
to top
>gb|AC069558.5|AC069558 Genomic Sequence For Arabidopsis thaliana Clone T5G13 From Chromosome
             IV, complete sequence
          Length = 107740

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 48/53 (90%)
 Strand = Plus / Minus

                                                                  
Query: 421   gctaagccaccaggtggaagccgaggagcaccagtcacaaactggcagaaagc 473
             |||||||||||||| ||||||| |||||| ||||| ||||| |||||||||||
Sbjct: 14540 gctaagccaccaggaggaagcctaggagctccagttacaaattggcagaaagc 14488



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                            
Query: 286   agtttaagatagttggcacaagtcatgacgctaggcagatcatcatc 332
             |||||||| ||||| || ||||||||||| || |||| |||||||||
Sbjct: 14915 agtttaaggtagtttgcgcaagtcatgacactgggcaaatcatcatc 14869
to top
>gb|AC069327.7|AC069327 Genomic Sequence For Arabidopsis thaliana Clone T26G08 From Chromosome
             IV, complete sequence
          Length = 94770

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 48/53 (90%)
 Strand = Plus / Minus

                                                                  
Query: 421   gctaagccaccaggtggaagccgaggagcaccagtcacaaactggcagaaagc 473
             |||||||||||||| ||||||| |||||| ||||| ||||| |||||||||||
Sbjct: 92289 gctaagccaccaggaggaagcctaggagctccagttacaaattggcagaaagc 92237



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                            
Query: 286   agtttaagatagttggcacaagtcatgacgctaggcagatcatcatc 332
             |||||||| ||||| || ||||||||||| || |||| |||||||||
Sbjct: 92664 agtttaaggtagtttgcgcaagtcatgacactgggcaaatcatcatc 92618
to top
>emb|AL035540.1|ATF20M13 Arabidopsis thaliana DNA chromosome 4, BAC clone  F20M13 (ESSA project)
          Length = 91938

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 48/53 (90%)
 Strand = Plus / Plus

                                                                  
Query: 421   gctaagccaccaggtggaagccgaggagcaccagtcacaaactggcagaaagc 473
             |||||||||||||| ||||||| |||||| ||||| ||||| |||||||||||
Sbjct: 51928 gctaagccaccaggaggaagcctaggagctccagttacaaattggcagaaagc 51980



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 41/47 (87%)
 Strand = Plus / Plus

                                                            
Query: 286   agtttaagatagttggcacaagtcatgacgctaggcagatcatcatc 332
             |||||||| ||||| || ||||||||||| || |||| |||||||||
Sbjct: 51553 agtttaaggtagtttgcgcaagtcatgacactgggcaaatcatcatc 51599
to top
>gb|AC121235.20| Medicago truncatula clone mth2-21k24, complete sequence
          Length = 116205

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 51/59 (86%)
 Strand = Plus / Plus

                                                                        
Query: 210   atcaaacgacccctggccttcgttgatagcataaagcagcttcttgtgcataacttcct 268
             |||||| || ||||||||||| ||||| ||||| |  |||||||||||||||| |||||
Sbjct: 63623 atcaaaggatccctggccttcattgattgcatacattagcttcttgtgcataatttcct 63681
to top
>gb|U76747.1|TAU76747 Triticum aestivum Tap mRNA, partial cds
          Length = 621

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 60/71 (84%)
 Strand = Plus / Minus

                                                                       
Query: 244 agcagcttcttgtgcataacttcctttgtcgagtatggcggaagtttaagatagttggca 303
           |||||||||||| |||| ||||||||||| || ||||| || || || ||||| ||||| 
Sbjct: 242 agcagcttcttgcgcatgacttcctttgtggaatatgggggtagcttgagataattggcg 183

                      
Query: 304 caagtcatgac 314
           || ||||||||
Sbjct: 182 catgtcatgac 172
to top
>ref|XM_460177.1| Debaryomyces hansenii CBS767 hypothetical protein (DEHA0E21175g)
            partial mRNA
          Length = 4995

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 44/51 (86%)
 Strand = Plus / Minus

                                                               
Query: 283  ggaagtttaagatagttggcacaagtcatgacgctaggcagatcatcatca 333
            |||||||||||||| || || |||||||| || ||||||| || |||||||
Sbjct: 4913 ggaagtttaagataattagcgcaagtcattacactaggcaaataatcatca 4863
to top
>emb|CR382137.1| Debaryomyces hansenii chromosome E of strain CBS767 of Debaryomyces
               hansenii
          Length = 2037969

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 44/51 (86%)
 Strand = Plus / Plus

                                                                  
Query: 283     ggaagtttaagatagttggcacaagtcatgacgctaggcagatcatcatca 333
               |||||||||||||| || || |||||||| || ||||||| || |||||||
Sbjct: 1668312 ggaagtttaagataattagcgcaagtcattacactaggcaaataatcatca 1668362
to top
>emb|BX004819.11| Zebrafish DNA sequence from clone CH211-208B16 in linkage group 8,
             complete sequence
          Length = 234864

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 125   aatgaacaaactaactgaataaa 147
             |||||||||||||||||||||||
Sbjct: 43817 aatgaacaaactaactgaataaa 43795
to top
>gb|AC095247.5| Rattus norvegicus 4 BAC CH230-10C6 (Children's Hospital Oakland Research
              Institute) complete sequence
          Length = 238466

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 218    acccctggccttcgttgatagcata 242
              ||||||||||||| |||||||||||
Sbjct: 137088 acccctggccttctttgatagcata 137112
to top
>gb|AC087066.3| Rattus norvegicus strain Brown Norway clone RP31-194D8, complete sequence
          Length = 166751

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 218    acccctggccttcgttgatagcata 242
              ||||||||||||| |||||||||||
Sbjct: 132652 acccctggccttctttgatagcata 132676
to top
>gb|AC121216.4| Rattus norvegicus 4 CH230-220A21 (Children's Hospital Oakland Research
             Institute) complete sequence
          Length = 224326

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 218   acccctggccttcgttgatagcata 242
             ||||||||||||| |||||||||||
Sbjct: 49597 acccctggccttctttgatagcata 49621
to top
>gb|AC159277.3| Mus musculus BAC clone RP23-356J2 from chromosome 17, complete sequence
          Length = 231245

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 52     ctggcaccacaagatccaggc 72
              |||||||||||||||||||||
Sbjct: 102304 ctggcaccacaagatccaggc 102284
to top
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 73       tctaaacctttcacaaaagaa 93
                |||||||||||||||||||||
Sbjct: 19057598 tctaaacctttcacaaaagaa 19057618
to top
>gb|DP000027.1| Rattus norvegicus target 1 genomic scaffold
          Length = 1888123

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 218    acccctggccttcgttgatagcata 242
              ||||||||||||| |||||||||||
Sbjct: 960990 acccctggccttctttgatagcata 961014
to top
>dbj|AB008921.2| Mus musculus mGpi1 gene, complete cds
          Length = 8098

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 52   ctggcaccacaagatccaggc 72
            |||||||||||||||||||||
Sbjct: 4547 ctggcaccacaagatccaggc 4527
to top
>dbj|AP004730.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:OSJNBa0009J19
          Length = 156988

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 73     tctaaacctttcacaaaagaa 93
              |||||||||||||||||||||
Sbjct: 150268 tctaaacctttcacaaaagaa 150288
to top
>dbj|AP004328.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OJ1616_B03
          Length = 96081

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 73    tctaaacctttcacaaaagaa 93
             |||||||||||||||||||||
Sbjct: 55082 tctaaacctttcacaaaagaa 55102
to top
>gb|AY682109.1| Chlamys farreri clone CFSSR0334 microsatellite sequence
          Length = 554

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 341 ctgctgctccagctgcatttgaag 364
           ||||||||||||||||| ||||||
Sbjct: 196 ctgctgctccagctgcagttgaag 173
to top
>gb|AC124963.32| Medicago truncatula clone mth2-24f5, complete sequence
          Length = 159515

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 292  agatagttggcacaagtcatgacgctaggcag 323
            |||||||| ||||||||||| || ||||||||
Sbjct: 6290 agatagtttgcacaagtcatcacactaggcag 6259
to top
>emb|AL035555.11|HS217P22 Human DNA sequence from clone RP1-217P22 on chromosome 6p21.1-21.31
              Contains part of the DNAH8 gene for dynein axonemal heavy
              polypeptide 8 and a novel pseudogene similar to part of
              zuotin related factor-1 (ZRF1), complete sequence
          Length = 130796

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 101    aaagcctatgttatacatga 120
              ||||||||||||||||||||
Sbjct: 114612 aaagcctatgttatacatga 114593
to top
>emb|AL023284.1|HS406A7 Human DNA sequence from clone RP3-406A7 on chromosome 6q23-24 Contains a
              pseudogene similar to Elongation Factor 1-Alpha
              (EF-1-ALPHA, Statin S1), a ribosomal protein, large, P1
              (RPLP1) pseudogene, a novel pseudogene, a NADH
              dehydrogenase (ubiquinone) Fe-S protein 5 (15kD)
              (NADH-coenzyme Q reductase) (NDUFS5) pseudogene, the 3' end
              of the MAP7 gene for microtubule-associated protein 7
              (EMAP115, E-MAP-115) and a CpG island, complete sequence
          Length = 167691

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 250    ttcttgtgcataacttcctt 269
              ||||||||||||||||||||
Sbjct: 153401 ttcttgtgcataacttcctt 153420
to top
>emb|BX950851.1| Erwinia carotovora subsp. atroseptica SCRI1043, complete genome
          Length = 5064019

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 452     cagtcacaaactggcagaaa 471
               ||||||||||||||||||||
Sbjct: 4022936 cagtcacaaactggcagaaa 4022955
to top
>emb|AL031173.1|DMSEG0001 Drosophila melanogaster sequence EG0001 (inter cosmid region from
             division 1AB)
          Length = 16554

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 117   atgacgacaatgaacaaact 136
             ||||||||||||||||||||
Sbjct: 16198 atgacgacaatgaacaaact 16217
to top
>emb|BX470259.9| Zebrafish DNA sequence from clone CH211-225N18 in linkage group 15,
              complete sequence
          Length = 188687

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 26     ggaatgaagagagaatgtta 45
              ||||||||||||||||||||
Sbjct: 184633 ggaatgaagagagaatgtta 184614
to top
>gb|AC105774.8| Drosophila melanogaster X BAC RP98-8O5 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 170186

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 117   atgacgacaatgaacaaact 136
             ||||||||||||||||||||
Sbjct: 41890 atgacgacaatgaacaaact 41909
to top
>emb|BX571943.8| Zebrafish DNA sequence from clone DKEY-159C24 in linkage group 13,
             complete sequence
          Length = 193538

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 251   tcttgtgcataacttcctttgtcg 274
             ||||||||| ||||||||||||||
Sbjct: 96514 tcttgtgcagaacttcctttgtcg 96491
to top
>gb|AC009385.8| Drosophila melanogaster 3L BAC RP98-23M20 (Roswell Park Cancer
             Institute Drosophila BAC Library) complete sequence
          Length = 178628

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 340   tctgctgctccagctgcatt 359
             ||||||||||||||||||||
Sbjct: 51000 tctgctgctccagctgcatt 50981
to top
>gb|AC022402.5| Homo sapiens chromosome 06 clone RP11-70I3, complete sequence
          Length = 164270

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 101   aaagcctatgttatacatga 120
             ||||||||||||||||||||
Sbjct: 91677 aaagcctatgttatacatga 91658
to top
>emb|BX000702.11| Zebrafish DNA sequence from clone CH211-160D19 in linkage group 15,
             complete sequence
          Length = 161904

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 26    ggaatgaagagagaatgtta 45
             ||||||||||||||||||||
Sbjct: 43038 ggaatgaagagagaatgtta 43057
to top
>gb|AC116340.3| Homo sapiens chromosome 5 clone RP11-118I21, complete sequence
          Length = 160144

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 174   aacatctgtatgttagtttt 193
             ||||||||||||||||||||
Sbjct: 53387 aacatctgtatgttagtttt 53406
to top
>gb|AC069240.23| Homo sapiens 12 BAC RP11-385N17 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 210010

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 130    acaaactaactgaataaaaactgg 153
              |||||||||||||||||| |||||
Sbjct: 118726 acaaactaactgaataaagactgg 118749
to top
>gb|AE003520.4| Drosophila melanogaster chromosome 3L, section 65 of 83 of the complete
              sequence
          Length = 275124

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 340    tctgctgctccagctgcatt 359
              ||||||||||||||||||||
Sbjct: 230225 tctgctgctccagctgcatt 230206
to top
>gb|AE003417.4| Drosophila melanogaster chromosome X, section 1 of 74 of the complete
              sequence
          Length = 387740

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 117    atgacgacaatgaacaaact 136
              ||||||||||||||||||||
Sbjct: 299373 atgacgacaatgaacaaact 299392
to top
>gb|AC155338.1| Brassica rapa subsp. pekinensis chromosome Cytogenetic chromosome 1
             clone KBrH138P04, complete sequence
          Length = 137697

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 452   cagtcacaaactggcagaaa 471
             ||||||||||||||||||||
Sbjct: 32986 cagtcacaaactggcagaaa 33005


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,615,586
Number of Sequences: 3902068
Number of extensions: 4615586
Number of successful extensions: 83996
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 83818
Number of HSP's gapped (non-prelim): 176
length of query: 532
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 509
effective length of database: 17,143,297,704
effective search space: 8725938531336
effective search space used: 8725938531336
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top