Clone Name | rbasd20g07 |
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Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | DUS11_HUMAN (O75319) RNA/RNP complex-1-interacting phosphatase (... | 31 | 3.5 | 2 | HMGCL_PSEMV (P13703) Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4... | 31 | 3.5 | 3 | ARLY_BACCR (Q817C7) Argininosuccinate lyase (EC 4.3.2.1) (Argino... | 31 | 3.5 |
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>DUS11_HUMAN (O75319) RNA/RNP complex-1-interacting phosphatase (EC 3.1.3.-)| (Phosphatase that interacts with RNA/RNP complex 1) (Dual-specificity protein phosphatase 11) Length = 330 Score = 30.8 bits (68), Expect = 3.5 Identities = 12/23 (52%), Positives = 18/23 (78%) Frame = +2 Query: 197 DAARHSKDRRRLYPYHYWEISIP 265 +A+R ++DRRR YPY+Y +S P Sbjct: 301 NASRAAQDRRRWYPYNYSRLSYP 323
>HMGCL_PSEMV (P13703) Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) (HMG-CoA| lyase) (HL) (3-hydroxy-3-methylglutarate-CoA lyase) Length = 301 Score = 30.8 bits (68), Expect = 3.5 Identities = 28/113 (24%), Positives = 45/113 (39%), Gaps = 1/113 (0%) Frame = +2 Query: 212 SKDRRRLYPYHYWEISI-PKFGMAGLV*TARLHRTCRSTLEKGQKHSHITEAFG*SMSNM 388 +K RRLY +EIS+ G TA+L C L H + +G +++N+ Sbjct: 157 AKVARRLYELGCYEISLGDTIGAGRPDETAQLFELCARQLPVAALAGHFHDTWGMAIANV 216 Query: 389 QAERMIIY*TTMQIQYCQGIFCFVSDQARNSSIPCQTPYTVDIIFDSILYILH 547 A QG+ F S A P + ++ + +LY+LH Sbjct: 217 HAA------------LAQGVRTFDSSVAGLGGCPYSPGASGNVATEDLLYLLH 257
>ARLY_BACCR (Q817C7) Argininosuccinate lyase (EC 4.3.2.1) (Arginosuccinase)| (ASAL) Length = 462 Score = 30.8 bits (68), Expect = 3.5 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 11/57 (19%) Frame = +3 Query: 210 TAKTVGGCIHIITG--------RSPFPNLVWQDWS---ELLDYIEHVAAHWRKGRNI 347 T KTV GC+HI+TG + V QD+S E+ DY+ + +R+ I Sbjct: 331 TVKTVEGCLHIMTGMLETMTVNKEKMGQAVTQDFSNATEIADYLANKGLPFRQAHEI 387 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 95,028,533 Number of Sequences: 219361 Number of extensions: 1949862 Number of successful extensions: 4679 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 4576 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4678 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5824436538 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)