ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd20g07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1DUS11_HUMAN (O75319) RNA/RNP complex-1-interacting phosphatase (... 31 3.5
2HMGCL_PSEMV (P13703) Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4... 31 3.5
3ARLY_BACCR (Q817C7) Argininosuccinate lyase (EC 4.3.2.1) (Argino... 31 3.5

>DUS11_HUMAN (O75319) RNA/RNP complex-1-interacting phosphatase (EC 3.1.3.-)|
           (Phosphatase that interacts with RNA/RNP complex 1)
           (Dual-specificity protein phosphatase 11)
          Length = 330

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 12/23 (52%), Positives = 18/23 (78%)
 Frame = +2

Query: 197 DAARHSKDRRRLYPYHYWEISIP 265
           +A+R ++DRRR YPY+Y  +S P
Sbjct: 301 NASRAAQDRRRWYPYNYSRLSYP 323



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>HMGCL_PSEMV (P13703) Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) (HMG-CoA|
           lyase) (HL) (3-hydroxy-3-methylglutarate-CoA lyase)
          Length = 301

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 28/113 (24%), Positives = 45/113 (39%), Gaps = 1/113 (0%)
 Frame = +2

Query: 212 SKDRRRLYPYHYWEISI-PKFGMAGLV*TARLHRTCRSTLEKGQKHSHITEAFG*SMSNM 388
           +K  RRLY    +EIS+    G      TA+L   C   L       H  + +G +++N+
Sbjct: 157 AKVARRLYELGCYEISLGDTIGAGRPDETAQLFELCARQLPVAALAGHFHDTWGMAIANV 216

Query: 389 QAERMIIY*TTMQIQYCQGIFCFVSDQARNSSIPCQTPYTVDIIFDSILYILH 547
            A               QG+  F S  A     P     + ++  + +LY+LH
Sbjct: 217 HAA------------LAQGVRTFDSSVAGLGGCPYSPGASGNVATEDLLYLLH 257



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>ARLY_BACCR (Q817C7) Argininosuccinate lyase (EC 4.3.2.1) (Arginosuccinase)|
           (ASAL)
          Length = 462

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 11/57 (19%)
 Frame = +3

Query: 210 TAKTVGGCIHIITG--------RSPFPNLVWQDWS---ELLDYIEHVAAHWRKGRNI 347
           T KTV GC+HI+TG        +      V QD+S   E+ DY+ +    +R+   I
Sbjct: 331 TVKTVEGCLHIMTGMLETMTVNKEKMGQAVTQDFSNATEIADYLANKGLPFRQAHEI 387


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,028,533
Number of Sequences: 219361
Number of extensions: 1949862
Number of successful extensions: 4679
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4678
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5824436538
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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