ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd20f17
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GLB5_OLIMA (Q7M413) Hemoglobin, extracellular, major globin chai... 29 3.0
2UBP47_MOUSE (Q8BY87) Ubiquitin carboxyl-terminal hydrolase 47 (E... 28 4.0
3UBP47_HUMAN (Q96K76) Ubiquitin carboxyl-terminal hydrolase 47 (E... 28 4.0
4RYR1_PIG (P16960) Ryanodine receptor 1 (Skeletal muscle-type rya... 28 6.8
5FGRL1_RAT (Q7TQM3) Fibroblast growth factor receptor-like 1 prec... 27 8.8

>GLB5_OLIMA (Q7M413) Hemoglobin, extracellular, major globin chain a5|
          Length = 142

 Score = 28.9 bits (63), Expect = 3.0
 Identities = 14/24 (58%), Positives = 16/24 (66%), Gaps = 3/24 (12%)
 Frame = -3

Query: 381 DATSMNEL---RKWNEQYGEGGSR 319
           D TS+N L   R+W E YGEG SR
Sbjct: 1   DCTSLNRLLVKRQWAEAYGEGTSR 24



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>UBP47_MOUSE (Q8BY87) Ubiquitin carboxyl-terminal hydrolase 47 (EC 3.1.2.15)|
           (Ubiquitin thioesterase 47)
           (Ubiquitin-specific-processing protease 47)
           (Deubiquitinating enzyme 47)
          Length = 1376

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 16/38 (42%), Positives = 22/38 (57%)
 Frame = -2

Query: 250 GHSAPSSGFWYSPRASSSGAMVALYR*ADA*RTPKFPE 137
           G S+ S G++ S  ASS+ A + +YR  D  R  KF E
Sbjct: 537 GGSSGSRGYYSSAFASSTNAYMLIYRLKDPTRNAKFLE 574



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>UBP47_HUMAN (Q96K76) Ubiquitin carboxyl-terminal hydrolase 47 (EC 3.1.2.15)|
           (Ubiquitin thioesterase 47)
           (Ubiquitin-specific-processing protease 47)
           (Deubiquitinating enzyme 47)
          Length = 1375

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 16/38 (42%), Positives = 22/38 (57%)
 Frame = -2

Query: 250 GHSAPSSGFWYSPRASSSGAMVALYR*ADA*RTPKFPE 137
           G S+ S G++ S  ASS+ A + +YR  D  R  KF E
Sbjct: 537 GGSSGSRGYYSSAFASSTNAYMLIYRLKDPARNAKFLE 574



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>RYR1_PIG (P16960) Ryanodine receptor 1 (Skeletal muscle-type ryanodine|
            receptor) (RyR1) (RYR-1) (Skeletal muscle calcium release
            channel)
          Length = 5035

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -3

Query: 408  AKVSPSVAFDATSMNELRKWNEQYGEGGSRSKSPFG 301
            A++SPS+  +A     LR   E   +GG  ++ P G
Sbjct: 1797 ARLSPSIPLEALRDKALRMLGEAVRDGGQHARDPVG 1832



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>FGRL1_RAT (Q7TQM3) Fibroblast growth factor receptor-like 1 precursor (FGF|
           receptor-like protein 1)
          Length = 529

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +1

Query: 193 HRSKRL*VSTKNQRKEQSGRYKQKGRHRSG 282
           HR K+  +S KN + E SG+Y  +  +R+G
Sbjct: 195 HRKKKWTLSLKNLKPEDSGKYTCRVSNRAG 224


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,327,234
Number of Sequences: 219361
Number of extensions: 848423
Number of successful extensions: 1970
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1949
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1970
length of database: 80,573,946
effective HSP length: 112
effective length of database: 56,005,514
effective search space used: 1344132336
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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