>gb|AF479052.1| Triticum aestivum p60 katanin mRNA, partial cds
          Length = 405

 Score =  170 bits (86), Expect = 2e-39
 Identities = 113/122 (92%)
 Strand = Plus / Minus

                                                                       
Query: 289 ttaggtgccgaacccgaacggcgacttgctcctgctgccgccttcgccgtactgttcgtt 348
           |||| ||||||||||||| ||||| |||||||||||||||||||| |||||||| |||||
Sbjct: 405 ttagctgccgaacccgaatggcgatttgctcctgctgccgccttctccgtactgctcgtt 346

                                                                       
Query: 349 ccattttcttagctcgttcatgctcgtggcgtcgaaagcaacggatgggctcaccttggc 408
           |||||||||||||||||||||||| ||||| ||||| ||||| |||||||||||||||||
Sbjct: 345 ccattttcttagctcgttcatgcttgtggcatcgaaggcaacagatgggctcaccttggc 286

             
Query: 409 tt 410
           ||
Sbjct: 285 tt 284

>dbj|AK058549.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-017-C07, full
            insert sequence
          Length = 1466

 Score =  113 bits (57), Expect = 5e-22
 Identities = 108/125 (86%)
 Strand = Plus / Minus

                                                                        
Query: 286  atgttaggtgccgaacccgaacggcgacttgctcctgctgccgccttcgccgtactgttc 345
            ||||||| |||||||||| || || || || |||||||| || ||||| |||||||| ||
Sbjct: 1108 atgttagctgccgaacccaaatggtgatttactcctgcttccaccttccccgtactgctc 1049

                                                                        
Query: 346  gttccattttcttagctcgttcatgctcgtggcgtcgaaagcaacggatgggctcacctt 405
            ||||||||||| || ||||||||||||||||||||| ||||| |||||||| || |||||
Sbjct: 1048 gttccattttcgtaactcgttcatgctcgtggcgtcaaaagcgacggatggacttacctt 989

                 
Query: 406  ggctt 410
             ||||
Sbjct: 988  tgctt 984

>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score =  109 bits (55), Expect = 7e-21
 Identities = 97/111 (87%)
 Strand = Plus / Plus

                                                                           
Query: 286     atgttaggtgccgaacccgaacggcgacttgctcctgctgccgccttcgccgtactgttc 345
               ||||||| |||||||||| || || || || |||||||| || ||||| |||||||| ||
Sbjct: 6514918 atgttagctgccgaacccaaatggtgatttactcctgcttccaccttccccgtactgctc 6514977

                                                                  
Query: 346     gttccattttcttagctcgttcatgctcgtggcgtcgaaagcaacggatgg 396
               ||||||||||| || ||||||||||||||||||||| ||||| ||||||||
Sbjct: 6514978 gttccattttcgtaactcgttcatgctcgtggcgtcaaaagcgacggatgg 6515028

>dbj|AP003513.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0690H04
          Length = 137319

 Score =  109 bits (55), Expect = 7e-21
 Identities = 97/111 (87%)
 Strand = Plus / Plus

                                                                         
Query: 286   atgttaggtgccgaacccgaacggcgacttgctcctgctgccgccttcgccgtactgttc 345
             ||||||| |||||||||| || || || || |||||||| || ||||| |||||||| ||
Sbjct: 31294 atgttagctgccgaacccaaatggtgatttactcctgcttccaccttccccgtactgctc 31353

                                                                
Query: 346   gttccattttcttagctcgttcatgctcgtggcgtcgaaagcaacggatgg 396
             ||||||||||| || ||||||||||||||||||||| ||||| ||||||||
Sbjct: 31354 gttccattttcgtaactcgttcatgctcgtggcgtcaaaagcgacggatgg 31404

>ref|XM_467801.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1422

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 53/58 (91%)
 Strand = Plus / Minus

                                                                      
Query: 318  tcctgctgccgccttcgccgtactgttcgttccattttcttagctcgttcatgctcgt 375
            |||||||||| ||||| || ||||||||||||||||||||||  ||||||||||||||
Sbjct: 1393 tcctgctgccaccttcaccatactgttcgttccattttcttaattcgttcatgctcgt 1336

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 53/58 (91%)
 Strand = Plus / Minus

                                                                          
Query: 318      tcctgctgccgccttcgccgtactgttcgttccattttcttagctcgttcatgctcgt 375
                |||||||||| ||||| || ||||||||||||||||||||||  ||||||||||||||
Sbjct: 31501220 tcctgctgccaccttcaccatactgttcgttccattttcttaattcgttcatgctcgt 31501163

>dbj|AP005848.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBa0078N11
          Length = 155168

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 53/58 (91%)
 Strand = Plus / Minus

                                                                        
Query: 318    tcctgctgccgccttcgccgtactgttcgttccattttcttagctcgttcatgctcgt 375
              |||||||||| ||||| || ||||||||||||||||||||||  ||||||||||||||
Sbjct: 136617 tcctgctgccaccttcaccatactgttcgttccattttcttaattcgttcatgctcgt 136560

>ref|NM_103899.3| Arabidopsis thaliana ATP binding / ATPase/ nucleoside-triphosphatase/
            nucleotide binding AT1G50140 mRNA, complete cds
          Length = 2063

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 76/93 (81%)
 Strand = Plus / Minus

                                                                        
Query: 318  tcctgctgccgccttcgccgtactgttcgttccattttcttagctcgttcatgctcgtgg 377
            |||||||||| ||||| || || || |||||||||||||| ||||| |||||  | || |
Sbjct: 1900 tcctgctgcctccttcaccatattgctcgttccattttctcagctcattcatcgtagtcg 1841

                                             
Query: 378  cgtcgaaagcaacggatgggctcaccttggctt 410
            | ||| | || || |||||||||||||| ||||
Sbjct: 1840 catcgtacgccacagatgggctcaccttagctt 1808

>gb|AC015445.3|F2J10 Sequence of BAC F2J10 from Arabidopsis thaliana chromosome 1,
            complete sequence
          Length = 91720

 Score = 48.1 bits (24), Expect = 0.023
 Identities = 45/52 (86%)
 Strand = Plus / Minus

                                                                
Query: 318  tcctgctgccgccttcgccgtactgttcgttccattttcttagctcgttcat 369
            |||||||||| ||||| || || || |||||||||||||| ||||| |||||
Sbjct: 6136 tcctgctgcctccttcaccatattgctcgttccattttctcagctcattcat 6085

>gb|AY112377.1| Zea mays CL24781_1 mRNA sequence
          Length = 720

 Score = 48.1 bits (24), Expect = 0.023
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                   
Query: 318 tcctgctgccgccttcgccgtactgttcgttccattttct 357
           |||||||||| ||||| || ||||| ||||||||||||||
Sbjct: 474 tcctgctgccaccttccccatactgctcgttccattttct 513

>emb|CR936847.6| Mouse DNA sequence from clone DN-393H17 on chromosome 11, complete
              sequence
          Length = 170807

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 35     gttcttggtacaaaatagttgt 56
              ||||||||||||||||||||||
Sbjct: 149222 gttcttggtacaaaatagttgt 149243

>emb|AL662908.7| Mouse DNA sequence from clone RP23-478O10 on chromosome 11 Contains two
             NACHT, leucine rich repeat and PYD containing 1 (NALP1)
             pseudogenes, complete sequence
          Length = 96115

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 35    gttcttggtacaaaatagttgt 56
             ||||||||||||||||||||||
Sbjct: 14069 gttcttggtacaaaatagttgt 14090

>emb|BX682542.5| Mouse DNA sequence from clone RP23-125N5 on chromosome 4, complete
             sequence
          Length = 144906

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 229   cagaggaaggagcagagtggcc 250
             ||||||||||||||||||||||
Sbjct: 88009 cagaggaaggagcagagtggcc 87988

>gb|AC091523.23| Mus musculus strain C57BL/6J clone rp23-77a8 map 1, complete sequence
          Length = 235509

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 229    cagaggaaggagcagagtggc 249
              |||||||||||||||||||||
Sbjct: 123978 cagaggaaggagcagagtggc 123998

>gb|AC125116.4| Mus musculus BAC clone RP24-261C22 from chromosome 16, complete sequence
          Length = 180726

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 214    gtgagtaccaaaaaccagag 233
              ||||||||||||||||||||
Sbjct: 107706 gtgagtaccaaaaaccagag 107725

>emb|AL161912.15| Human DNA sequence from clone RP11-403N16 on chromosome 9 Contains a
             novel pseudogene and a novel gene, complete sequence
          Length = 102624

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 41    ggtacaaaatagttgtacctatgt 64
             |||||||||||||||||| |||||
Sbjct: 85574 ggtacaaaatagttgtacatatgt 85597

>gb|AC027801.10| Homo sapiens chromosome 17, clone RP11-304F15, complete sequence
          Length = 164914

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 228    ccagaggaaggagcagagtg 247
              ||||||||||||||||||||
Sbjct: 142235 ccagaggaaggagcagagtg 142254

>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome
          Length = 3304561

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 322     gctgccgccttcgccgtact 341
               ||||||||||||||||||||
Sbjct: 1703474 gctgccgccttcgccgtact 1703455

>gb|AC009720.19| Homo sapiens chromosome 17, clone RP11-1094H24, complete sequence
          Length = 146101

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 228    ccagaggaaggagcagagtg 247
              ||||||||||||||||||||
Sbjct: 140594 ccagaggaaggagcagagtg 140575

>gb|AC136968.2| Pan troglodytes clone RP43-93C21, complete sequence
          Length = 172660

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 228   ccagaggaaggagcagagtg 247
             ||||||||||||||||||||
Sbjct: 41318 ccagaggaaggagcagagtg 41337

>gb|AF012348.1|AF012348 Gallus gallus smooth muscle gamma actin (gamma actin) gene, complete
            cds
          Length = 4921

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 226  aaccagaggaaggagcagag 245
            ||||||||||||||||||||
Sbjct: 3233 aaccagaggaaggagcagag 3214


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,555,748
Number of Sequences: 3902068
Number of extensions: 2555748
Number of successful extensions: 43995
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 43905
Number of HSP's gapped (non-prelim): 89
length of query: 410
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 388
effective length of database: 17,147,199,772
effective search space: 6653113511536
effective search space used: 6653113511536
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)