Clone Name | rbasd20f17 |
---|---|
Clone Library Name | barley_pub |
>gb|AF479052.1| Triticum aestivum p60 katanin mRNA, partial cds Length = 405 Score = 170 bits (86), Expect = 2e-39 Identities = 113/122 (92%) Strand = Plus / Minus Query: 289 ttaggtgccgaacccgaacggcgacttgctcctgctgccgccttcgccgtactgttcgtt 348 |||| ||||||||||||| ||||| |||||||||||||||||||| |||||||| ||||| Sbjct: 405 ttagctgccgaacccgaatggcgatttgctcctgctgccgccttctccgtactgctcgtt 346 Query: 349 ccattttcttagctcgttcatgctcgtggcgtcgaaagcaacggatgggctcaccttggc 408 |||||||||||||||||||||||| ||||| ||||| ||||| ||||||||||||||||| Sbjct: 345 ccattttcttagctcgttcatgcttgtggcatcgaaggcaacagatgggctcaccttggc 286 Query: 409 tt 410 || Sbjct: 285 tt 284
>dbj|AK058549.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-017-C07, full insert sequence Length = 1466 Score = 113 bits (57), Expect = 5e-22 Identities = 108/125 (86%) Strand = Plus / Minus Query: 286 atgttaggtgccgaacccgaacggcgacttgctcctgctgccgccttcgccgtactgttc 345 ||||||| |||||||||| || || || || |||||||| || ||||| |||||||| || Sbjct: 1108 atgttagctgccgaacccaaatggtgatttactcctgcttccaccttccccgtactgctc 1049 Query: 346 gttccattttcttagctcgttcatgctcgtggcgtcgaaagcaacggatgggctcacctt 405 ||||||||||| || ||||||||||||||||||||| ||||| |||||||| || ||||| Sbjct: 1048 gttccattttcgtaactcgttcatgctcgtggcgtcaaaagcgacggatggacttacctt 989 Query: 406 ggctt 410 |||| Sbjct: 988 tgctt 984
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 109 bits (55), Expect = 7e-21 Identities = 97/111 (87%) Strand = Plus / Plus Query: 286 atgttaggtgccgaacccgaacggcgacttgctcctgctgccgccttcgccgtactgttc 345 ||||||| |||||||||| || || || || |||||||| || ||||| |||||||| || Sbjct: 6514918 atgttagctgccgaacccaaatggtgatttactcctgcttccaccttccccgtactgctc 6514977 Query: 346 gttccattttcttagctcgttcatgctcgtggcgtcgaaagcaacggatgg 396 ||||||||||| || ||||||||||||||||||||| ||||| |||||||| Sbjct: 6514978 gttccattttcgtaactcgttcatgctcgtggcgtcaaaagcgacggatgg 6515028
>dbj|AP003513.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0690H04 Length = 137319 Score = 109 bits (55), Expect = 7e-21 Identities = 97/111 (87%) Strand = Plus / Plus Query: 286 atgttaggtgccgaacccgaacggcgacttgctcctgctgccgccttcgccgtactgttc 345 ||||||| |||||||||| || || || || |||||||| || ||||| |||||||| || Sbjct: 31294 atgttagctgccgaacccaaatggtgatttactcctgcttccaccttccccgtactgctc 31353 Query: 346 gttccattttcttagctcgttcatgctcgtggcgtcgaaagcaacggatgg 396 ||||||||||| || ||||||||||||||||||||| ||||| |||||||| Sbjct: 31354 gttccattttcgtaactcgttcatgctcgtggcgtcaaaagcgacggatgg 31404
>ref|XM_467801.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1422 Score = 75.8 bits (38), Expect = 1e-10 Identities = 53/58 (91%) Strand = Plus / Minus Query: 318 tcctgctgccgccttcgccgtactgttcgttccattttcttagctcgttcatgctcgt 375 |||||||||| ||||| || |||||||||||||||||||||| |||||||||||||| Sbjct: 1393 tcctgctgccaccttcaccatactgttcgttccattttcttaattcgttcatgctcgt 1336
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 75.8 bits (38), Expect = 1e-10 Identities = 53/58 (91%) Strand = Plus / Minus Query: 318 tcctgctgccgccttcgccgtactgttcgttccattttcttagctcgttcatgctcgt 375 |||||||||| ||||| || |||||||||||||||||||||| |||||||||||||| Sbjct: 31501220 tcctgctgccaccttcaccatactgttcgttccattttcttaattcgttcatgctcgt 31501163
>dbj|AP005848.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0078N11 Length = 155168 Score = 75.8 bits (38), Expect = 1e-10 Identities = 53/58 (91%) Strand = Plus / Minus Query: 318 tcctgctgccgccttcgccgtactgttcgttccattttcttagctcgttcatgctcgt 375 |||||||||| ||||| || |||||||||||||||||||||| |||||||||||||| Sbjct: 136617 tcctgctgccaccttcaccatactgttcgttccattttcttaattcgttcatgctcgt 136560
>ref|NM_103899.3| Arabidopsis thaliana ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding AT1G50140 mRNA, complete cds Length = 2063 Score = 50.1 bits (25), Expect = 0.006 Identities = 76/93 (81%) Strand = Plus / Minus Query: 318 tcctgctgccgccttcgccgtactgttcgttccattttcttagctcgttcatgctcgtgg 377 |||||||||| ||||| || || || |||||||||||||| ||||| ||||| | || | Sbjct: 1900 tcctgctgcctccttcaccatattgctcgttccattttctcagctcattcatcgtagtcg 1841 Query: 378 cgtcgaaagcaacggatgggctcaccttggctt 410 | ||| | || || |||||||||||||| |||| Sbjct: 1840 catcgtacgccacagatgggctcaccttagctt 1808
>gb|AC015445.3|F2J10 Sequence of BAC F2J10 from Arabidopsis thaliana chromosome 1, complete sequence Length = 91720 Score = 48.1 bits (24), Expect = 0.023 Identities = 45/52 (86%) Strand = Plus / Minus Query: 318 tcctgctgccgccttcgccgtactgttcgttccattttcttagctcgttcat 369 |||||||||| ||||| || || || |||||||||||||| ||||| ||||| Sbjct: 6136 tcctgctgcctccttcaccatattgctcgttccattttctcagctcattcat 6085
>gb|AY112377.1| Zea mays CL24781_1 mRNA sequence Length = 720 Score = 48.1 bits (24), Expect = 0.023 Identities = 36/40 (90%) Strand = Plus / Plus Query: 318 tcctgctgccgccttcgccgtactgttcgttccattttct 357 |||||||||| ||||| || ||||| |||||||||||||| Sbjct: 474 tcctgctgccaccttccccatactgctcgttccattttct 513
>emb|CR936847.6| Mouse DNA sequence from clone DN-393H17 on chromosome 11, complete sequence Length = 170807 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Plus Query: 35 gttcttggtacaaaatagttgt 56 |||||||||||||||||||||| Sbjct: 149222 gttcttggtacaaaatagttgt 149243
>emb|AL662908.7| Mouse DNA sequence from clone RP23-478O10 on chromosome 11 Contains two NACHT, leucine rich repeat and PYD containing 1 (NALP1) pseudogenes, complete sequence Length = 96115 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Plus Query: 35 gttcttggtacaaaatagttgt 56 |||||||||||||||||||||| Sbjct: 14069 gttcttggtacaaaatagttgt 14090
>emb|BX682542.5| Mouse DNA sequence from clone RP23-125N5 on chromosome 4, complete sequence Length = 144906 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Minus Query: 229 cagaggaaggagcagagtggcc 250 |||||||||||||||||||||| Sbjct: 88009 cagaggaaggagcagagtggcc 87988
>gb|AC091523.23| Mus musculus strain C57BL/6J clone rp23-77a8 map 1, complete sequence Length = 235509 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 229 cagaggaaggagcagagtggc 249 ||||||||||||||||||||| Sbjct: 123978 cagaggaaggagcagagtggc 123998
>gb|AC125116.4| Mus musculus BAC clone RP24-261C22 from chromosome 16, complete sequence Length = 180726 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 214 gtgagtaccaaaaaccagag 233 |||||||||||||||||||| Sbjct: 107706 gtgagtaccaaaaaccagag 107725
>emb|AL161912.15| Human DNA sequence from clone RP11-403N16 on chromosome 9 Contains a novel pseudogene and a novel gene, complete sequence Length = 102624 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 41 ggtacaaaatagttgtacctatgt 64 |||||||||||||||||| ||||| Sbjct: 85574 ggtacaaaatagttgtacatatgt 85597
>gb|AC027801.10| Homo sapiens chromosome 17, clone RP11-304F15, complete sequence Length = 164914 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 228 ccagaggaaggagcagagtg 247 |||||||||||||||||||| Sbjct: 142235 ccagaggaaggagcagagtg 142254
>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome Length = 3304561 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 322 gctgccgccttcgccgtact 341 |||||||||||||||||||| Sbjct: 1703474 gctgccgccttcgccgtact 1703455
>gb|AC009720.19| Homo sapiens chromosome 17, clone RP11-1094H24, complete sequence Length = 146101 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 228 ccagaggaaggagcagagtg 247 |||||||||||||||||||| Sbjct: 140594 ccagaggaaggagcagagtg 140575
>gb|AC136968.2| Pan troglodytes clone RP43-93C21, complete sequence Length = 172660 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 228 ccagaggaaggagcagagtg 247 |||||||||||||||||||| Sbjct: 41318 ccagaggaaggagcagagtg 41337
>gb|AF012348.1|AF012348 Gallus gallus smooth muscle gamma actin (gamma actin) gene, complete cds Length = 4921 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 226 aaccagaggaaggagcagag 245 |||||||||||||||||||| Sbjct: 3233 aaccagaggaaggagcagag 3214 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,555,748 Number of Sequences: 3902068 Number of extensions: 2555748 Number of successful extensions: 43995 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 21 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 43905 Number of HSP's gapped (non-prelim): 89 length of query: 410 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 388 effective length of database: 17,147,199,772 effective search space: 6653113511536 effective search space used: 6653113511536 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)