ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbasd20f11 |
|---|---|
| Clone Library Name | barley_pub |
>ZF2N1_ARATH (Q6NNI8) Zinc finger A20 and AN1 domains-containing protein| At1g12440 Length = 168 Score = 84.0 bits (206), Expect = 2e-16 Identities = 33/52 (63%), Positives = 44/52 (84%) Frame = -2 Query: 443 GLTGFNCRCGNMYCSLHRYSDKHDCQFDYRTAARDAIAKANPVVKAEKLDKI 288 G+TGF CRCG+ +C HRY + H+CQFD++ AR+AIAKANPVVKA+K+D+I Sbjct: 117 GVTGFKCRCGSTFCGTHRYPESHECQFDFKGVAREAIAKANPVVKADKVDRI 168
>ISAP1_ORYSA (Q9LLX1) Multiple stress-responsive zinc-finger protein ISAP1| (Stress-associated protein 1) (OsISAP1) Length = 164 Score = 81.3 bits (199), Expect = 1e-15 Identities = 32/49 (65%), Positives = 42/49 (85%) Frame = -2 Query: 443 GLTGFNCRCGNMYCSLHRYSDKHDCQFDYRTAARDAIAKANPVVKAEKL 297 GLTGF CRCG+++C HRYSD+H C +DY++AARDAIA+ NPVV+A K+ Sbjct: 113 GLTGFRCRCGHLFCGEHRYSDRHGCSYDYKSAARDAIARDNPVVRAAKI 161
>Z20D2_MOUSE (O88878) Zinc finger A20 domain-containing protein 2 (Zinc finger| protein 216) Length = 213 Score = 80.9 bits (198), Expect = 1e-15 Identities = 33/52 (63%), Positives = 41/52 (78%) Frame = -2 Query: 443 GLTGFNCRCGNMYCSLHRYSDKHDCQFDYRTAARDAIAKANPVVKAEKLDKI 288 GLTGF+CRCGN++C LHRYSDKH+C +DY+ A I K NPVV AEK+ +I Sbjct: 162 GLTGFDCRCGNLFCGLHRYSDKHNCPYDYKAEAAAKIRKENPVVVAEKIQRI 213
>Z20D2_HUMAN (O76080) Zinc finger A20 domain-containing protein 2 (Zinc finger| protein 216) Length = 213 Score = 80.9 bits (198), Expect = 1e-15 Identities = 33/52 (63%), Positives = 41/52 (78%) Frame = -2 Query: 443 GLTGFNCRCGNMYCSLHRYSDKHDCQFDYRTAARDAIAKANPVVKAEKLDKI 288 GLTGF+CRCGN++C LHRYSDKH+C +DY+ A I K NPVV AEK+ +I Sbjct: 162 GLTGFDCRCGNLFCGLHRYSDKHNCPYDYKAEAAAKIRKENPVVVAEKIQRI 213
>ZF2N3_ARATH (Q9SZ69) Zinc finger A20 and AN1 domains-containing protein| At4g12040 Length = 175 Score = 77.0 bits (188), Expect = 2e-14 Identities = 29/52 (55%), Positives = 41/52 (78%) Frame = -2 Query: 443 GLTGFNCRCGNMYCSLHRYSDKHDCQFDYRTAARDAIAKANPVVKAEKLDKI 288 G+ GF C+CG+ +C HRY +KH+C FD++ RDAIAKANP+VKA+K+ +I Sbjct: 124 GVMGFKCKCGSTFCGSHRYPEKHECSFDFKEVGRDAIAKANPLVKADKVQRI 175
>ZF2N2_ARATH (Q9SJM6) Zinc finger A20 and AN1 domains-containing protein| At2g36320 Length = 161 Score = 73.2 bits (178), Expect = 3e-13 Identities = 31/52 (59%), Positives = 38/52 (73%) Frame = -2 Query: 443 GLTGFNCRCGNMYCSLHRYSDKHDCQFDYRTAARDAIAKANPVVKAEKLDKI 288 GLTGF CRCG +C HRY + H C FD+++A R+ IAKANP+V A KL KI Sbjct: 110 GLTGFMCRCGTTFCGSHRYPEVHGCTFDFKSAGREEIAKANPLVIAAKLQKI 161
>ZFAN3_XENLA (Q66J85) AN1-type zinc finger protein 3 homolog| Length = 226 Score = 44.3 bits (103), Expect = 1e-04 Identities = 18/46 (39%), Positives = 28/46 (60%) Frame = -2 Query: 428 NCRCGNMYCSLHRYSDKHDCQFDYRTAARDAIAKANPVVKAEKLDK 291 +CRCG ++C LHR ++HDC FD+ R+ ++K KLD+ Sbjct: 172 SCRCGYVFCMLHRLPEQHDCTFDHMGRGRE-----EAIMKMVKLDR 212
>ZFAN3_RAT (Q5U2M7) AN1-type zinc finger protein 3 (Testis-expressed sequence| 27) Length = 227 Score = 44.3 bits (103), Expect = 1e-04 Identities = 18/46 (39%), Positives = 28/46 (60%) Frame = -2 Query: 428 NCRCGNMYCSLHRYSDKHDCQFDYRTAARDAIAKANPVVKAEKLDK 291 +CRCG ++C LHR ++HDC FD+ R+ ++K KLD+ Sbjct: 173 SCRCGYVFCMLHRLPEQHDCTFDHMGRGRE-----EAIMKMVKLDR 213
>ZFAN3_MOUSE (Q497H0) AN1-type zinc finger protein 3 (Testis-expressed sequence| 27) Length = 227 Score = 44.3 bits (103), Expect = 1e-04 Identities = 18/46 (39%), Positives = 28/46 (60%) Frame = -2 Query: 428 NCRCGNMYCSLHRYSDKHDCQFDYRTAARDAIAKANPVVKAEKLDK 291 +CRCG ++C LHR ++HDC FD+ R+ ++K KLD+ Sbjct: 173 SCRCGYVFCMLHRLPEQHDCTFDHMGRGRE-----EAIMKMVKLDR 213
>ZFAN3_HUMAN (Q9H8U3) AN1-type zinc finger protein 3 (Testis-expressed sequence| 27) Length = 227 Score = 44.3 bits (103), Expect = 1e-04 Identities = 18/46 (39%), Positives = 28/46 (60%) Frame = -2 Query: 428 NCRCGNMYCSLHRYSDKHDCQFDYRTAARDAIAKANPVVKAEKLDK 291 +CRCG ++C LHR ++HDC FD+ R+ ++K KLD+ Sbjct: 173 SCRCGYVFCMLHRLPEQHDCTFDHMGRGRE-----EAIMKMVKLDR 213
>NORQ_PARDE (Q51664) Protein norQ| Length = 270 Score = 31.6 bits (70), Expect = 0.91 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%) Frame = -1 Query: 300 ARQDLGVL-QGRNGCNLPRFIIHLCCAILAPPFLVGCH 190 A DL VL +G GC RF+ H+ + P + V CH Sbjct: 32 AANDLPVLLKGPTGCGKTRFVAHMAARLGRPLYTVACH 69
>VG40_ICHV1 (Q00145) Hypothetical gene 40 protein| Length = 136 Score = 29.6 bits (65), Expect = 3.5 Identities = 17/54 (31%), Positives = 28/54 (51%) Frame = -3 Query: 304 RSSTRFRCPTGKKWLQSAKVHHPSLLCHPCTSLSCWLPHFLNCTAS*CTLRRGS 143 RS++ F C + L ++ PS+ CT+ SCW H L +++ +RR S Sbjct: 26 RSNSWFVCKIVYRCLSPRRIISPSI----CTAFSCWANHGLRLSST-AAMRRSS 74
>YVDC_LACLA (Q9CE03) Hypothetical UPF0177 protein yvdC| Length = 261 Score = 29.6 bits (65), Expect = 3.5 Identities = 26/100 (26%), Positives = 45/100 (45%), Gaps = 14/100 (14%) Frame = -2 Query: 305 EKLDKI*VSYREEMVAICQGSSSIFAVPSLHLPFLLAATFPKLYGIVM--HTASWQLQEL 132 EKL + YR +V I S +V HLPFL+ A + G++ H + W + L Sbjct: 5 EKLQSL-AKYRWVIVIILALLFSALSVSIFHLPFLMTALVLSIVGLIFAYHKSVWLV--L 61 Query: 131 NPLSHSEWFACCV------------TLFMVVFSVSIVASH 48 LS+ A + +F ++F ++I++S+ Sbjct: 62 FILSNLPMLATTIFAYQHHFTTLDTVIFFIIFLLTIISSY 101
>ALG2_CANGA (Q6FJJ9) Alpha-1,3-mannosyltransferase ALG2 (EC 2.4.1.-)| (GDP-Man:Man(1)GlcNAc(2)-PP-dolichol mannosyltransferase) (Asparagine-linked glycosylation protein 2) Length = 458 Score = 29.6 bits (65), Expect = 3.5 Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 2/60 (3%) Frame = -2 Query: 422 RCGNMYCSLHRYSDKHDCQFDYRTAARDAIAKANPVVKAEKLDKI--*VSYREEMVAICQ 249 +C N Y S++RY K + + + A+ ++ N VV +I V Y +E+ +C+ Sbjct: 215 KCPNFYLSINRYERKKNIELAIQAFAKASVENTNLVVCGGYDPRIHENVQYLQELTCLCK 274
>IL17E_HUMAN (Q9H293) Interleukin-17E precursor (IL-17E) (Interleukin-25)| (IL-25) Length = 177 Score = 29.3 bits (64), Expect = 4.5 Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 4/31 (12%) Frame = +2 Query: 257 LQPFLPCRTPKSCRASLPSPLG----WPWRW 337 L+P P R P+SCRAS PL PWR+ Sbjct: 62 LEPARPNRHPESCRASEDGPLNSRAISPWRY 92
>PA2X_BUNFA (P14411) Phospholipase A2 isozyme X, basic (EC 3.1.1.4)| (Phosphatidylcholine 2-acylhydrolase) Length = 118 Score = 29.3 bits (64), Expect = 4.5 Identities = 14/30 (46%), Positives = 14/30 (46%), Gaps = 3/30 (10%) Frame = +1 Query: 139 CSCHDAVCITM---PYNLGNVAANKKGRCK 219 C C A I PYNL N NKK CK Sbjct: 89 CDCDRAAAICFAAAPYNLSNFGINKKTHCK 118
>ZFN2B_RAT (Q4KLG9) AN1-type zinc finger protein 2B| Length = 257 Score = 28.9 bits (63), Expect = 5.9 Identities = 11/31 (35%), Positives = 16/31 (51%) Frame = -2 Query: 422 RCGNMYCSLHRYSDKHDCQFDYRTAARDAIA 330 RCG +C HR+ HDC + +R +A Sbjct: 117 RCGRNFCIKHRHPLDHDCSGEGHPTSRAGLA 147
>DUOX1_PIG (Q8HZK3) Dual oxidase 1 precursor (EC 1.6.3.1) (EC 1.11.1.-)| Length = 1553 Score = 28.9 bits (63), Expect = 5.9 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 5/38 (13%) Frame = -3 Query: 112 NGLRVV*LYSWWFFRSV-----LWLLILASSVYVLLSH 14 NG Y WWFF++V + LL++ + +YV SH Sbjct: 1176 NGSEFPQKYYWWFFQTVPGLTGVMLLLILAIMYVFASH 1213
>NIRQ_PSEST (Q02441) Denitrification regulatory protein nirQ| Length = 275 Score = 28.5 bits (62), Expect = 7.7 Identities = 10/31 (32%), Positives = 17/31 (54%) Frame = -1 Query: 282 VLQGRNGCNLPRFIIHLCCAILAPPFLVGCH 190 +++G GC RF+ H+ + P + V CH Sbjct: 44 LIKGPTGCGKTRFVQHMAHRLNLPLYTVACH 74
>SYA_BUCBP (P59420) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)| (AlaRS) Length = 880 Score = 28.5 bits (62), Expect = 7.7 Identities = 9/15 (60%), Positives = 12/15 (80%) Frame = -1 Query: 285 GVLQGRNGCNLPRFI 241 G + G NGCN+PRF+ Sbjct: 195 GTIPGNNGCNVPRFV 209 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 69,048,073 Number of Sequences: 219361 Number of extensions: 1491531 Number of successful extensions: 4376 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 4223 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4375 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2618960580 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
