ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd20f02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MT1_WHEAT (P43400) Metallothionein-like protein 1 (MT-1) 86 7e-17
2MT1_FESRU (O24528) Metallothionein-like protein 1 (MT-1) 53 4e-07
3MT1_ORYSA (Q40633) Metallothionein-like protein 1 45 8e-05
4MT1_MAIZE (P30571) Metallothionein-like protein 1 (MT-1) 36 0.060
5MT1_HORVU (P26571) Metallothionein-like protein 1 (MT-1) 35 0.10

>MT1_WHEAT (P43400) Metallothionein-like protein 1 (MT-1)|
          Length = 75

 Score = 85.5 bits (210), Expect = 7e-17
 Identities = 42/45 (93%), Positives = 43/45 (95%)
 Frame = -2

Query: 378 KMYPDLTEQGSATAQVAAVVVLGMAPENKAGQFEVAAGQSGEXCS 244
           KMYPDLTEQGSA AQVAAVVVLG+APENKAGQFEVAAGQSGE CS
Sbjct: 19  KMYPDLTEQGSAAAQVAAVVVLGVAPENKAGQFEVAAGQSGEGCS 63



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>MT1_FESRU (O24528) Metallothionein-like protein 1 (MT-1)|
          Length = 70

 Score = 53.1 bits (126), Expect = 4e-07
 Identities = 27/39 (69%), Positives = 32/39 (82%)
 Frame = -2

Query: 378 KMYPDLTEQGSATAQVAAVVVLGMAPENKAGQFEVAAGQ 262
           KMYPDL EQ S T Q  AVVV+G+A ENKAGQFE+A+G+
Sbjct: 19  KMYPDLDEQASTTTQ--AVVVVGVAHENKAGQFEMASGE 55



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>MT1_ORYSA (Q40633) Metallothionein-like protein 1|
          Length = 74

 Score = 45.4 bits (106), Expect = 8e-05
 Identities = 26/47 (55%), Positives = 31/47 (65%), Gaps = 2/47 (4%)
 Frame = -2

Query: 378 KMYPDLTEQGSATAQVAAVVVLGMAPENKAGQFEVAA--GQSGEXCS 244
           K YPDL E+ S+T    A VVLG+APE KA QFE AA  G++   CS
Sbjct: 19  KKYPDLEEKSSSTK---ATVVLGVAPEKKAQQFEAAAESGETAHGCS 62



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>MT1_MAIZE (P30571) Metallothionein-like protein 1 (MT-1)|
          Length = 76

 Score = 35.8 bits (81), Expect = 0.060
 Identities = 22/43 (51%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = -2

Query: 378 KMYPDLTEQGSATAQVAAVVVLGMAPENKAG-QFEVAAGQSGE 253
           K YPDL E  +A       VVLG+APE KA  +F  AA +SGE
Sbjct: 19  KKYPDLEETSTAAQPT---VVLGVAPEKKAAPEFVEAAAESGE 58



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>MT1_HORVU (P26571) Metallothionein-like protein 1 (MT-1)|
          Length = 74

 Score = 35.0 bits (79), Expect = 0.10
 Identities = 23/47 (48%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
 Frame = -2

Query: 378 KMYPDLTEQGSATAQVAAVVVLGMAPENKAGQFEVAA--GQSGEXCS 244
           KMYPDL E+  AT QV  V+VLG+   +   QFE AA  G++   CS
Sbjct: 19  KMYPDLEEKSGATMQV-TVIVLGVG--SAKVQFEEAAEFGEAAHGCS 62


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,921,907
Number of Sequences: 219361
Number of extensions: 468560
Number of successful extensions: 1175
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1174
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3246866728
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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