>IF2_SILPO (Q5LWL4) Translation initiation factor IF-2|
          Length = 835

 Score = 36.6 bits (83), Expect = 0.026
 Identities = 34/133 (25%), Positives = 53/133 (39%), Gaps = 4/133 (3%)
 Frame = +2

Query: 35  QGGRDREQRNRTGKALLGSRLEKRRSRRPEEQQRTARAQTSSRRWGPAERQRTEXXXXXX 214
           Q  ++REQR    +A   +  E+R+ R  EE+ + A  + ++ +  P   +  E      
Sbjct: 113 QEAKEREQREAEQRAREKAEEEERQRREAEEEAKRAAVRAAAEQEAPKAERSAERAPAAA 172

Query: 215 XXXXXXXXRQLIWRGARFGEGRDPAGWNEDDGNRQ---RMPETGSGASGRE-SCRRPAGL 382
                   R+   R  R  E R   G    DG R     + +   G  GR+ S       
Sbjct: 173 RPEGGDNARRTTDRD-REREQRQTRGKGRQDGRRSGKLTLSQVTDGEGGRQKSLAAMKRK 231

Query: 383 QER*QQEDRGAAA 421
           QER +Q+  G AA
Sbjct: 232 QERARQKAMGGAA 244

>PRP5_GIBZE (Q4IP34) Pre-mRNA-processing ATP-dependent RNA helicase PRP5 (EC|
           3.6.1.-)
          Length = 1227

 Score = 33.5 bits (75), Expect = 0.22
 Identities = 31/109 (28%), Positives = 38/109 (34%), Gaps = 1/109 (0%)
 Frame = +2

Query: 44  RDREQRNRTGKALLGSRLEKRRSRRPEEQQRTARAQTSSRRWGP-AERQRTEXXXXXXXX 220
           RDR    R      G R + R     E  +R +R +   R   P  +R+R          
Sbjct: 93  RDRSLDRRDDNHYRGGRRDNR-----ERDRRRSRDRFDDRIRSPMTDRRRNRSRENDRDV 147

Query: 221 XXXXXXRQLIWRGARFGEGRDPAGWNEDDGNRQRMPETGSGASGRESCR 367
                 R  I  G R G    PA  N DDG  Q+ P   SG  G    R
Sbjct: 148 RRRDDSRSRI-SGRREGTTDSPARSNRDDGRNQKTPLDDSGNGGASQVR 195

>ZN469_HUMAN (Q96JG9) Zinc finger protein 469 (Fragment)|
          Length = 2469

 Score = 32.7 bits (73), Expect = 0.37
 Identities = 22/81 (27%), Positives = 29/81 (35%), Gaps = 2/81 (2%)
 Frame = -2

Query: 413 LPDPPAATSPAGPQVFCSSPGRWLPIXXXXXXXXXXXXXXXXLDLAP--LRISPLARSAA 240
           LP  P+   P GPQ   +    W P+                  +AP  L  SP     A
Sbjct: 666 LPASPSCRDPPGPQQLLACSPAWAPLEEADGVQATTDTGAEDSPVAPPSLTTSPCDPKEA 725

Query: 239 AASTCLEEKATPRWVPSSAVP 177
            A   L+ + +P   PSS  P
Sbjct: 726 LAGCLLQGEGSPLEDPSSWPP 746

>RBM16_HUMAN (Q9UPN6) Putative RNA-binding protein 16 (RNA-binding motif protein|
           16)
          Length = 1271

 Score = 32.3 bits (72), Expect = 0.49
 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
 Frame = +2

Query: 14  RSTCSCRQGGRDREQRNRTGKALLGSRLEKR----RSRRPEEQQRTARAQTSSRRWGPAE 181
           RS        R R  R R  ++  GSR  K     RSR  E +++++R+ +S RR    E
Sbjct: 397 RSRSRTHSRSRSRSPRKRRSRSRSGSRKRKHRKRSRSRSRERKRKSSRSYSSERRARERE 456

Query: 182 RQR 190
           ++R
Sbjct: 457 KER 459

>PRT_ANTGR (P17502) Protamine|
          Length = 132

 Score = 32.0 bits (71), Expect = 0.64
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +2

Query: 23  CSCRQGGRDREQRNRTGKALLGSRLEKRRSRRPEEQQRTARAQTSSRR 166
           C C+  GRDR++      ++L  R  +RR R    ++R+ R +   RR
Sbjct: 78  CWCKMSGRDRKKYYNQACSMLKKRGRRRRRRSCRRRRRSCRRRRRRRR 125

>RU17_MOUSE (Q62376) U1 small nuclear ribonucleoprotein 70 kDa (U1 SNRNP 70|
           kDa) (snRNP70)
          Length = 448

 Score = 32.0 bits (71), Expect = 0.64
 Identities = 36/145 (24%), Positives = 48/145 (33%), Gaps = 10/145 (6%)
 Frame = +2

Query: 5   RSGRSTCSCRQGGRDREQRNRTGKALLGSRLEKRRSRRPEEQQRTARAQTSSRRWG---- 172
           R G S    R   RDRE+  R          E+RRSR  + ++R+       RR      
Sbjct: 222 RPGPSPLPHRDRDRDRERERRERSRERDKERERRRSRSRDRRRRSRSRDKDERRRSRERS 281

Query: 173 -PAERQRTEXXXXXXXXXXXXXXRQLIWRGARFGEGRDPAGWNEDDGNRQRMPETGSGA- 346
              +R R                R+   RG   G G    G     G+     E G GA 
Sbjct: 282 KDKDRDRKRRSSRSRERARRERERKEELRGGGGGGGGGSGGGG--GGDMAEPSEAGDGAP 339

Query: 347 ----SGRESCRRPAGLQER*QQEDR 409
                G      P G +E+ +  DR
Sbjct: 340 DDGPPGELGPEGPDGPEEKGRDRDR 364

>YQBO_BACSU (P45931) Hypothetical protein yqbO|
          Length = 1585

 Score = 31.6 bits (70), Expect = 0.83
 Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
 Frame = +2

Query: 5   RSGRST-CSCRQGGRDREQRNRTGKALLGSRLEKRRSRRPEEQQRTARAQTSSRRWG 172
           RSG  T C C  GG++   R R GK +LG R    R    +     +  +   RR G
Sbjct: 627 RSGSLTYCCCSDGGKNDRIRRRRGKRVLGRRGNPNRMNPSDSSIAVSSERLERRRSG 683

>VE2_HPV05 (P06921) Regulatory protein E2|
          Length = 514

 Score = 31.2 bits (69), Expect = 1.1
 Identities = 18/51 (35%), Positives = 24/51 (47%)
 Frame = +2

Query: 11  GRSTCSCRQGGRDREQRNRTGKALLGSRLEKRRSRRPEEQQRTARAQTSSR 163
           GRS  +CR+GG  R  R R+      S    +RS+R   +  T R    SR
Sbjct: 314 GRSPTTCRRGG-GRSPRRRSRSPSTSSSCTTQRSQRARAESSTTRGARGSR 363



 Score = 28.1 bits (61), Expect = 9.2
 Identities = 24/100 (24%), Positives = 34/100 (34%), Gaps = 5/100 (5%)
 Frame = +2

Query: 92  RLEKRRSRRPEEQQRTARAQTSSR-RWGPAERQRTEXXXXXXXXXXXXXXRQLIWRGARF 268
           R    +SRR + QQR +R++  SR R     + +T               +         
Sbjct: 252 RRPSSKSRRSQTQQRRSRSRHRSRSRSRSRSKSQTHTTRSTTRSRSTSLTKTRALTSRSR 311

Query: 269 GEGRDPA----GWNEDDGNRQRMPETGSGASGRESCRRPA 376
             GR P     G       R R P T S  + + S R  A
Sbjct: 312 SRGRSPTTCRRGGGRSPRRRSRSPSTSSSCTTQRSQRARA 351

>PLPP_HUMAN (Q96GD0) Pyridoxal phosphate phosphatase (EC 3.1.3.74) (PLP|
           phosphatase)
          Length = 296

 Score = 30.0 bits (66), Expect = 2.4
 Identities = 18/40 (45%), Positives = 22/40 (55%)
 Frame = +3

Query: 6   DLAEAPARAGKADGIVSKEIERAKHSLVVDWKRDGAGALR 125
           +L E  ARAGKA   VS    RA+  L + + R G G LR
Sbjct: 42  ELLERLARAGKAALFVSNNSRRARPELALRFARLGFGGLR 81

>SFR15_HUMAN (O95104) Splicing factor, arginine/serine-rich 15 (CTD-binding|
           SR-like protein RA4)
          Length = 1147

 Score = 30.0 bits (66), Expect = 2.4
 Identities = 19/64 (29%), Positives = 33/64 (51%)
 Frame = +2

Query: 5   RSGRSTCSCRQGGRDREQRNRTGKALLGSRLEKRRSRRPEEQQRTARAQTSSRRWGPAER 184
           R  RS  + R   R   +R+R+G     SR  + RSR  + ++ + R+++  RR    ER
Sbjct: 432 RKSRSRSASRSPKR---RRSRSGSRSRRSRHRRSRSRSRDRRRHSPRSRSQERRDREKER 488

Query: 185 QRTE 196
           +R +
Sbjct: 489 ERRQ 492

>5E5_RAT (Q63003) 5E5 antigen|
          Length = 825

 Score = 30.0 bits (66), Expect = 2.4
 Identities = 21/55 (38%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
 Frame = +2

Query: 251 WRGARFGEGRDPAGWNEDDGNRQRMPETGSGASG-RESCRRPAGLQER*QQEDRG 412
           WRG R G G   +G       R R    GSG SG RE    P+    R +Q  RG
Sbjct: 571 WRGGRRGGGAGASGGGRGGRGRGRGGRRGSGLSGTREDAGSPSA--RRGEQRRRG 623

>DMWD_MOUSE (Q08274) Dystrophia myotonica WD repeat-containing protein|
           (Dystrophia myotonica-containing WD repeat motif
           protein) (DMR-N9 protein)
          Length = 650

 Score = 30.0 bits (66), Expect = 2.4
 Identities = 19/49 (38%), Positives = 23/49 (46%)
 Frame = -1

Query: 351 PLAPDPVSGILCRFPSSSFHPAGSRPSPNLAPRQISCRRVYLPGGEGYP 205
           P  P   SG     P+SS  PAG  P P L   ++S  R+  P G G P
Sbjct: 46  PPGPAAASGPGAAGPASSPPPAGPGPGPALPAVRLSLVRLGDPDGAGEP 94

>JPH2_MOUSE (Q9ET78) Junctophilin-2 (Junctophilin type 2) (JP-2)|
          Length = 696

 Score = 29.6 bits (65), Expect = 3.2
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = +2

Query: 284 PAGWNEDDGNRQRMPETGSGASGRESCRRPA 376
           P  WN + G     P T S  +GR S  RPA
Sbjct: 502 PGSWNGEPGGEGSRPATPSDGAGRRSPARPA 532

>SFR15_RAT (Q63627) Splicing factor, arginine/serine-rich 15 (CTD-binding|
           SR-like protein RA4) (Fragment)
          Length = 1048

 Score = 29.6 bits (65), Expect = 3.2
 Identities = 16/70 (22%), Positives = 31/70 (44%)
 Frame = +2

Query: 50  REQRNRTGKALLGSRLEKRRSRRPEEQQRTARAQTSSRRWGPAERQRTEXXXXXXXXXXX 229
           + +R+R+G     SR  + RSR  + ++ + R+++  RR    ER+R +           
Sbjct: 358 KRRRSRSGSRSRRSRHRRSRSRSRDRRRHSPRSRSQERRDREKERERRQKGLPQIKSETA 417

Query: 230 XXXRQLIWRG 259
                 +W G
Sbjct: 418 SVCSTTLWVG 427



 Score = 28.5 bits (62), Expect = 7.1
 Identities = 16/50 (32%), Positives = 21/50 (42%)
 Frame = +2

Query: 41   GRDREQRNRTGKALLGSRLEKRRSRRPEEQQRTARAQTSSRRWGPAERQR 190
            GRD+E   R G+   GSR+E  R R          +    R WG    +R
Sbjct: 896  GRDQE---RFGRRSFGSRVENDRERYGSRSDERDNSNRERREWGRRSPER 942

>VE2_HPV5B (P26545) Regulatory protein E2|
          Length = 514

 Score = 29.6 bits (65), Expect = 3.2
 Identities = 18/51 (35%), Positives = 24/51 (47%)
 Frame = +2

Query: 11  GRSTCSCRQGGRDREQRNRTGKALLGSRLEKRRSRRPEEQQRTARAQTSSR 163
           GRS  +CR+GG  R  R R+      S    +RS+R   +  T R    SR
Sbjct: 314 GRSPSTCRRGG-GRSPRRRSRSPSTYSSCTTQRSQRARAESPTTRGARGSR 363

>RSP5_CAEEL (Q10021) Probable splicing factor, arginine/serine-rich 5|
           (RNA-binding protein srp-3) (CeSC35-2)
          Length = 208

 Score = 29.3 bits (64), Expect = 4.1
 Identities = 29/115 (25%), Positives = 43/115 (37%), Gaps = 2/115 (1%)
 Frame = +2

Query: 86  GSRLEKRRSRRPEEQQRTARAQTSSRRWGPAERQRTEXXXXXXXXXXXXXXRQLIWRGAR 265
           GSR  +RRSR P  + RT   + S  R    +R+R+               R+      R
Sbjct: 83  GSRSPRRRSRSPRRRSRTPPRRRSRSR----DRKRSRRSRSRSSSRSRSPVRE----SRR 134

Query: 266 FGEGRDPAGWNE--DDGNRQRMPETGSGASGRESCRRPAGLQER*QQEDRGAAAS 424
             E R P+   +   + +R R P      S   S   P    +R +   RG + S
Sbjct: 135 RSESRSPSPKRDLKREASRSRSPLPAKDRSRTRSGSPPKNGGDRKRSVSRGRSHS 189

>SON_MOUSE (Q9QX47) SON protein|
          Length = 2404

 Score = 29.3 bits (64), Expect = 4.1
 Identities = 31/122 (25%), Positives = 46/122 (37%), Gaps = 3/122 (2%)
 Frame = +2

Query: 5    RSGRSTCSCRQGGR---DREQRNRTGKALLGSRLEKRRSRRPEEQQRTARAQTSSRRWGP 175
            RS RS    R  GR    +E+R R+ K    SR  KR+     + ++ ARA++ +    P
Sbjct: 1857 RSSRSRSKSR--GRRSVSKEKRKRSPKHRSKSRERKRKRSSSRDNRKAARARSRT----P 1910

Query: 176  AERQRTEXXXXXXXXXXXXXXRQLIWRGARFGEGRDPAGWNEDDGNRQRMPETGSGASGR 355
            + R R+               R      +R    R P+  +     R R P   S    R
Sbjct: 1911 SRRSRSHTPSRRRRSISVGRRRSFSISPSR--RSRTPSRRSRTPSRRSRTPSRRSRTPSR 1968

Query: 356  ES 361
             S
Sbjct: 1969 RS 1970

>NKX61_MESAU (Q60554) Homeobox protein Nkx-6.1|
          Length = 364

 Score = 29.3 bits (64), Expect = 4.1
 Identities = 26/85 (30%), Positives = 33/85 (38%), Gaps = 4/85 (4%)
 Frame = -1

Query: 411 PRSSCCYLSCRPAGLL----QLSRPLAPDPVSGILCRFPSSSFHPAGSRPSPNLAPRQIS 244
           PR S   LS  P   L    ++  PL P     +    PSSS   + S PSP L      
Sbjct: 10  PRQSAFLLSSPPLAALHSMAEMKTPLYPATYPPLPTGPPSSSSSSSSSSPSPPLG----- 64

Query: 243 CRRVYLPGGEGYPEVGSVLCRSAGP 169
               + PGG   P  G +   S+ P
Sbjct: 65  ---AHNPGGLKPPAAGGLSSLSSPP 86

>ICP0_BHV1K (P29836) Trans-acting transcriptional protein ICP0 (P135 protein)|
           (IER 2.9/ER2.6)
          Length = 676

 Score = 28.9 bits (63), Expect = 5.4
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = +1

Query: 127 TAADGESADKQQEMGSSGTAEDGTHLGVAFSSRQVDAAAADLARG 261
           TAADGE+     E G++G +E G   G A ++ +   A A  A G
Sbjct: 103 TAADGEAPGAGGEAGAAGGSEAGGGAGGAEAAGEARGAGAGRAAG 147

>LAMC3_HUMAN (Q9Y6N6) Laminin gamma-3 chain precursor (Laminin 12 gamma 3 subunit)|
          Length = 1587

 Score = 28.9 bits (63), Expect = 5.4
 Identities = 22/86 (25%), Positives = 30/86 (34%), Gaps = 6/86 (6%)
 Frame = -1

Query: 420  AAAPRSSCCYLSCRPAGLLQLSRPLAPDPVSGILCRFP------SSSFHPAGSRPSPNLA 259
            A  P   C   SC P G   +S  +  DPV+G     P       S  +P      P   
Sbjct: 856  APRPADKCMPCSCHPQG--SVSEQMPCDPVTGQCSCLPHVTARDCSRCYPGFFDLQPGRG 913

Query: 258  PRQISCRRVYLPGGEGYPEVGSVLCR 181
             R   C  +     + +P+ G   CR
Sbjct: 914  CRSCKCHPLGSQEDQCHPKTGQCTCR 939

>RSP6_CAEEL (Q18409) Probable splicing factor, arginine/serine-rich 6|
           (RNA-binding protein srp-1) (CeSRp20)
          Length = 179

 Score = 28.9 bits (63), Expect = 5.4
 Identities = 19/61 (31%), Positives = 27/61 (44%)
 Frame = +2

Query: 11  GRSTCSCRQGGRDREQRNRTGKALLGSRLEKRRSRRPEEQQRTARAQTSSRRWGPAERQR 190
           GRS    R  GRDR +     ++       + RSR    ++   R +T SR   P ER R
Sbjct: 106 GRSRSRSRDRGRDRSRDRSRDRS-------RDRSRDRSRERSRERERTRSRSRSPQERDR 158

Query: 191 T 193
           +
Sbjct: 159 S 159

>CSK2C_SCHPO (O94281) Probable casein kinase II subunit beta-2 (CK II beta-2)|
          Length = 254

 Score = 28.9 bits (63), Expect = 5.4
 Identities = 22/88 (25%), Positives = 29/88 (32%)
 Frame = -1

Query: 429 GIEAAAPRSSCCYLSCRPAGLLQLSRPLAPDPVSGILCRFPSSSFHPAGSRPSPNLAPRQ 250
           GI    PR +CCY    PAGL            S I+ + P   F P             
Sbjct: 134 GIFGCCPRVNCCYTHVLPAGL------------SDIVGKMPVMLFCP------------- 168

Query: 249 ISCRRVYLPGGEGYPEVGSVLCRSAGPH 166
            +C  +Y P    Y  +      +  PH
Sbjct: 169 -NCLDLYAPSSSRYKNIDGSFFGATFPH 195

>HSP1_ANTLA (O18745) Sperm protamine P1|
          Length = 61

 Score = 28.9 bits (63), Expect = 5.4
 Identities = 18/53 (33%), Positives = 26/53 (49%)
 Frame = +2

Query: 32  RQGGRDREQRNRTGKALLGSRLEKRRSRRPEEQQRTARAQTSSRRWGPAERQR 190
           R   R R +R R  ++   +R   RRSRR   ++R  R   S RR+    R+R
Sbjct: 8   RSRSRSRYRRRRRRRSRHHNRRTYRRSRRHSRRRRGRRRGYSRRRYSRRGRRR 60

>RU17_HUMAN (P08621) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70|
           kDa) (snRNP70) (U1-70K)
          Length = 437

 Score = 28.5 bits (62), Expect = 7.1
 Identities = 17/54 (31%), Positives = 23/54 (42%)
 Frame = +2

Query: 5   RSGRSTCSCRQGGRDREQRNRTGKALLGSRLEKRRSRRPEEQQRTARAQTSSRR 166
           R G S    R   RDRE+  R          E+RRSR  + ++R+       RR
Sbjct: 222 RPGPSPLPHRDRDRDRERERRERSRERDKERERRRSRSRDRRRRSRSRDKEERR 275

>NFAC1_PIG (O77638) Nuclear factor of activated T-cells, cytoplasmic 1 (NFAT|
           transcription complex cytosolic component) (NF-ATc1)
           (NF-ATc) (NFATmac)
          Length = 822

 Score = 28.5 bits (62), Expect = 7.1
 Identities = 28/84 (33%), Positives = 38/84 (45%), Gaps = 11/84 (13%)
 Frame = -1

Query: 390 LSCRPA--GLLQLSRP-------LAPDPVSGILCRFPSSSFHPAGSRPSPNLAPR--QIS 244
           L+C P   GL  L++P       L PDP S ++  FP      A   P P+ +P+   +S
Sbjct: 703 LTCGPVSQGLNPLTKPCYGPPLALPPDPSSCLVAGFPPCPQRSAVMSPPPSASPKLHDLS 762

Query: 243 CRRVYLPGGEGYPEVGSVLCRSAG 172
           C   Y  G  G   +G  L R AG
Sbjct: 763 C-APYSKGMAGPGHLG--LQRPAG 783

>ERYA1_SACER (Q03131) Erythronolide synthase, modules 1 and 2 (EC 2.3.1.94) (ORF|
           1) (6-deoxyerythronolide B synthase I) (DEBS 1)
          Length = 3491

 Score = 28.5 bits (62), Expect = 7.1
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = -3

Query: 169 PSPAACLRSRRPLLFLRAPAPSLFQSTTKECFARSISLLTIPSALPARAGASARS 5
           P+PA C  SRRP      P+P+   +  + C  R ++++   +A  A   A A +
Sbjct: 384 PNPALCRSSRRPRRKTSRPSPASTGTRHRTCCERLLAVVNGETAALAGREADAEA 438

>CARB_CAUCR (Q9A4D6) Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)|
            (Carbamoyl-phosphate synthetase ammonia chain)
          Length = 1099

 Score = 28.5 bits (62), Expect = 7.1
 Identities = 14/51 (27%), Positives = 23/51 (45%)
 Frame = +3

Query: 24   ARAGKADGIVSKEIERAKHSLVVDWKRDGAGALRNSSGRRERRQAAGDGVQ 176
            AR    D ++  E+      + +DWKRDG   +  +  R   +   G GV+
Sbjct: 914  ARFAGVDTVLGPEMRSTGEVMGLDWKRDGETGMGPAFARAFAKSQLGGGVK 964

>GSHB_AGRT5 (Q8UII5) Glutathione synthetase (EC 6.3.2.3) (Glutathione synthase)|
           (GSH synthetase) (GSH-S) (GSHase)
          Length = 319

 Score = 28.5 bits (62), Expect = 7.1
 Identities = 14/25 (56%), Positives = 16/25 (64%)
 Frame = +2

Query: 116 RPEEQQRTARAQTSSRRWGPAERQR 190
           RPE  + TAR Q   RR GPA R+R
Sbjct: 242 RPEPTELTAREQEICRRIGPALRER 266

>HSP1_PLAMS (O18746) Sperm protamine P1|
          Length = 61

 Score = 28.5 bits (62), Expect = 7.1
 Identities = 18/53 (33%), Positives = 23/53 (43%)
 Frame = +2

Query: 32  RQGGRDREQRNRTGKALLGSRLEKRRSRRPEEQQRTARAQTSSRRWGPAERQR 190
           R   R R Q  R  +     R   RRSRR   ++R  R   S RR+    R+R
Sbjct: 8   RSRSRSRNQCQRRRRRRYNRRRTYRRSRRHSRRRRGRRRGCSRRRYSRRGRRR 60

>TNNT1_HUMAN (P13805) Troponin T, slow skeletal muscle (TnTs) (Slow skeletal|
           muscle troponin T) (sTnT)
          Length = 277

 Score = 28.1 bits (61), Expect = 9.2
 Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
 Frame = +2

Query: 53  EQRNRTGKAL--LGSRLEKRRSRRPEEQQ-RTARAQTSSRRWGPAERQRTEXXXXXXXXX 223
           EQR +  + L  L  R+E+RRS R E+Q+ RT + +    +    + ++ E         
Sbjct: 86  EQRKKEEEELVALKERIERRRSERAEQQRFRTEKERERQAKLAEEKMRKEEEEAKKRAED 145

Query: 224 XXXXXRQLIWRGARFG 271
                + L   GA FG
Sbjct: 146 DAKKKKVLSNMGAHFG 161

>GDF5_HUMAN (P43026) Growth/differentiation factor 5 precursor (GDF-5)|
           (Cartilage-derived morphogenetic protein 1) (CDMP-1)
           (Radotermin)
          Length = 501

 Score = 28.1 bits (61), Expect = 9.2
 Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 6/40 (15%)
 Frame = -1

Query: 291 PAGSRPSPNLAP--RQISCRRV----YLPGGEGYPEVGSV 190
           P G  P P   P  RQ + R V     LPGG+  P+ GSV
Sbjct: 101 PGGPEPKPGHPPQTRQATARTVTPKGQLPGGKAPPKAGSV 140

>TTF2_DROME (P34739) Transcription termination factor 2 (EC 3.6.1.-) (RNA|
           polymerase II termination factor) (Transcription release
           factor 2) (Protein lodestar)
          Length = 1061

 Score = 28.1 bits (61), Expect = 9.2
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = +2

Query: 257 GARFGEGRDPAGWN--EDDGNRQRMPETGSGASGRESCRR 370
           G    EG+D +  +  EDD N++R   TG  + GR+  RR
Sbjct: 485 GQEMSEGKDESSDSDSEDDKNKKRKSVTGWKSKGRKDTRR 524

>DDX23_PONPY (Q5RC67) Probable ATP-dependent RNA helicase DDX23 (EC 3.6.1.-)|
           (DEAD box protein 23)
          Length = 820

 Score = 28.1 bits (61), Expect = 9.2
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
 Frame = +2

Query: 41  GRDREQRNRTGKALLGSRLEKRRSRRPEEQQ----RTARAQTSSRRW 169
           G D +Q+ R      G  +EKRR+   +EQ+    R  R + + +RW
Sbjct: 306 GIDLKQQKREQSRFYGDLMEKRRTLEEKEQEEARFRKLRKKEAKQRW 352


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,651,203
Number of Sequences: 219361
Number of extensions: 1099222
Number of successful extensions: 4740
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 4306
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4708
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2395157885
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)