ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd20e15 |
|---|---|
| Clone Library Name | barley_pub |
>GCP5_HUMAN (Q96RT8) Gamma-tubulin complex component 5 (GCP-5)| Length = 1024 Score = 45.4 bits (106), Expect = 1e-04 Identities = 33/105 (31%), Positives = 54/105 (51%), Gaps = 1/105 (0%) Frame = -1 Query: 633 ATTLDEVMEVHEAYLSSIQRQCFVASDKLWALIASRVKTILGLALDFHNVEQT-LGTGGT 457 A LD+++++H YLS+I +C + + + + +L LAL F + Q LGT Sbjct: 920 AKDLDQLIKIHYRYLSTIHDRCLLREKV--SFVKEAIMKVLNLALMFADGWQAGLGTW-- 975 Query: 456 AASVRARCEMELDRIEKQFDECVVFLLRILSFKLNVGHFPHLADL 322 R E ++++E F C +FL+ IL+ + G FPHL L Sbjct: 976 ------RME-SIEKMESDFKNCHMFLVTILNKAVCRGSFPHLESL 1013
>GCP5_MACFA (Q95K09) Gamma-tubulin complex component 5 (GCP-5) (Fragment)| Length = 725 Score = 45.4 bits (106), Expect = 1e-04 Identities = 33/105 (31%), Positives = 54/105 (51%), Gaps = 1/105 (0%) Frame = -1 Query: 633 ATTLDEVMEVHEAYLSSIQRQCFVASDKLWALIASRVKTILGLALDFHNVEQT-LGTGGT 457 A LD+++++H YLS+I +C + + + + +L LAL F + Q LGT Sbjct: 621 AKDLDQLIKIHYRYLSTIHDRCLLREKV--SFVKEAIMKVLNLALMFADGWQAGLGTW-- 676 Query: 456 AASVRARCEMELDRIEKQFDECVVFLLRILSFKLNVGHFPHLADL 322 R E ++++E F C +FL+ IL+ + G FPHL L Sbjct: 677 ------RME-SIEKMESDFKNCHMFLVTILNKAVCRGSFPHLESL 714
>GCP6_HUMAN (Q96RT7) Gamma-tubulin complex component 6 (GCP-6)| Length = 1819 Score = 43.1 bits (100), Expect = 7e-04 Identities = 30/124 (24%), Positives = 58/124 (46%), Gaps = 4/124 (3%) Frame = -1 Query: 651 CDGMASATTLDEVMEVHEAYLSSIQRQCF--VASDKLWALIASRVKTILGLALDFHN--V 484 C+ A T+ ++ E+ A+ + + F + ++K A + + + +I L L F + + Sbjct: 1694 CEFRARLATVGDLEEIQRAHAEYLHKAVFRGLLTEKA-APVMNVIHSIFSLVLKFRSQLI 1752 Query: 483 EQTLGTGGTAASVRARCEMELDRIEKQFDECVVFLLRILSFKLNVGHFPHLADLVTRINY 304 Q G G + + F FL ++++ +N G+ PHL D + RIN+ Sbjct: 1753 SQAWGPPGGPRGAEHPNFALMQQSYNTFKYYSHFLFKVVTKLVNRGYQPHLEDFLLRINF 1812 Query: 303 NHYY 292 N+YY Sbjct: 1813 NNYY 1816
>GCP3_DROME (Q9XYP8) Gamma-tubulin complex component 3 homolog (Gamma ring| complex protein 91) (dGrip91) (d91p) Length = 917 Score = 35.8 bits (81), Expect = 0.11 Identities = 15/29 (51%), Positives = 21/29 (72%) Frame = -1 Query: 642 MASATTLDEVMEVHEAYLSSIQRQCFVAS 556 M ATTLDE++E HE +L +I CFV++ Sbjct: 733 MQKATTLDEILEAHEKFLQTILVGCFVSN 761
>ALP6_SCHPO (Q9USQ2) Spindle pole body component alp6 (Altered polarity protein| 6) Length = 832 Score = 34.3 bits (77), Expect = 0.33 Identities = 34/128 (26%), Positives = 54/128 (42%), Gaps = 14/128 (10%) Frame = -1 Query: 627 TLDEVMEVHEAYLSSIQRQCFVASDKL--WALIASRVKTILGLALDFHNVEQTLGTGGTA 454 TLD +E HE Y++SI + + K ++ IL + L+FH+ + L + Sbjct: 693 TLDTYIEAHEKYVTSITHKGLLGGGKSRNEDSFLHQLHDILKVILNFHDAIELLYNFSCS 752 Query: 453 ASVRARCEMEL--DRIEKQ----------FDECVVFLLRILSFKLNVGHFPHLADLVTRI 310 S R R + + D + Q F E L+ L L P + L R+ Sbjct: 753 LSNRIRINVPISTDALAAQYTPIKNELSNFTEEFQVRLQKLLHGLASHKDPEMRFLSVRL 812 Query: 309 NYNHYYMS 286 NYN +Y+S Sbjct: 813 NYNEFYVS 820
>SPC97_DICDI (Q95ZG3) Spindle pole body component 97 (Spc97) (DdSpc97)| Length = 1177 Score = 32.7 bits (73), Expect = 0.96 Identities = 22/119 (18%), Positives = 49/119 (41%) Frame = -1 Query: 648 DGMASATTLDEVMEVHEAYLSSIQRQCFVASDKLWALIASRVKTILGLALDFHNVEQTLG 469 + + ++ T+D+V+ +H +L + +C + KL ++ + L + F N + Sbjct: 859 NSIKTSKTVDDVIRIHNDFLETCLTECMLTDTKLVNILMK----FMSLCITFANFTNEMM 914 Query: 468 TGGTAASVRARCEMELDRIEKQFDECVVFLLRILSFKLNVGHFPHLADLVTRINYNHYY 292 + + + E +F + L+ L H+ L+ R++YN YY Sbjct: 915 QDEKNIDTE-QIKKTISSSENKFHAILKVLMDTLKSFSKTESNRHMIHLIHRLDYNGYY 972
>GCP4_MOUSE (Q9D4F8) Gamma-tubulin complex component 4 (GCP-4)| Length = 667 Score = 32.3 bits (72), Expect = 1.3 Identities = 32/122 (26%), Positives = 51/122 (41%), Gaps = 1/122 (0%) Frame = -1 Query: 636 SATTLDEVMEVHEAYLSSIQRQCFVASDKLWALIASRVKTILGLALDFHN-VEQTLGTGG 460 S + + H+ +LS++ Q F+ ++ + IL L F + V Q LG Sbjct: 550 STRDFESIRLAHDHFLSNLLAQSFILLKPVFHCL----NEILDLCHSFCSLVSQNLGP-- 603 Query: 459 TAASVRARCEMELDRIEKQFDECVVFLLRILSFKLNVGHFPHLADLVTRINYNHYYMSDT 280 + R +L + K F L +ILS N LA L+ R++YN YY Sbjct: 604 ----LDERGAAQLSILVKGFSRQSSLLFKILSSVRNHQINSDLAQLLLRLDYNKYYTQAG 659 Query: 279 GS 274 G+ Sbjct: 660 GT 661
>GCP4_HUMAN (Q9UGJ1) Gamma-tubulin complex component 4 (GCP-4) (hGCP4) (h76p)| (Hgrip76) Length = 667 Score = 32.3 bits (72), Expect = 1.3 Identities = 32/122 (26%), Positives = 51/122 (41%), Gaps = 1/122 (0%) Frame = -1 Query: 636 SATTLDEVMEVHEAYLSSIQRQCFVASDKLWALIASRVKTILGLALDFHN-VEQTLGTGG 460 S + + H+ +LS++ Q F+ ++ + IL L F + V Q LG Sbjct: 550 STRDFESIRLAHDHFLSNLLAQSFILLKPVFHCL----NEILDLCHSFCSLVSQNLGP-- 603 Query: 459 TAASVRARCEMELDRIEKQFDECVVFLLRILSFKLNVGHFPHLADLVTRINYNHYYMSDT 280 + R +L + K F L +ILS N LA L+ R++YN YY Sbjct: 604 ----LDERGAAQLSILVKGFSRQSSLLFKILSSVRNHQINSDLAQLLLRLDYNKYYTQAG 659 Query: 279 GS 274 G+ Sbjct: 660 GT 661
>UREE_STRT2 (Q5M606) Urease accessory protein ureE| Length = 150 Score = 31.2 bits (69), Expect = 2.8 Identities = 19/49 (38%), Positives = 27/49 (55%) Frame = +1 Query: 274 ASGVRHVIVIVVDPRDQIREMGKVAHVQLER*DPQEEHDALVELLLDPI 420 A GV +IV+ P+D + EMG AH+ P E DA + L +DP+ Sbjct: 70 AIGVESQDLIVISPKD-MDEMGITAHILGNTHKPIEVKDAKIYLEVDPV 117
>UREE_STRT1 (Q5M1G5) Urease accessory protein ureE| Length = 150 Score = 31.2 bits (69), Expect = 2.8 Identities = 19/49 (38%), Positives = 27/49 (55%) Frame = +1 Query: 274 ASGVRHVIVIVVDPRDQIREMGKVAHVQLER*DPQEEHDALVELLLDPI 420 A GV +IV+ P+D + EMG AH+ P E DA + L +DP+ Sbjct: 70 AIGVESQDLIVISPKD-MDEMGITAHILGNTHKPIEVKDAKIYLEVDPV 117
>UREE_STRSL (Q55055) Urease accessory protein ureE| Length = 150 Score = 31.2 bits (69), Expect = 2.8 Identities = 19/49 (38%), Positives = 27/49 (55%) Frame = +1 Query: 274 ASGVRHVIVIVVDPRDQIREMGKVAHVQLER*DPQEEHDALVELLLDPI 420 A GV +IV+ P+D + EMG AH+ P E DA + L +DP+ Sbjct: 70 AIGVESQDLIVISPKD-MDEMGITAHILGNTHKPIEVKDAKIYLEVDPV 117
>PHLB2_HUMAN (Q86SQ0) Pleckstrin homology-like domain family B member 2 (Protein| LL5-beta) Length = 1253 Score = 31.2 bits (69), Expect = 2.8 Identities = 21/85 (24%), Positives = 43/85 (50%) Frame = -1 Query: 642 MASATTLDEVMEVHEAYLSSIQRQCFVASDKLWALIASRVKTILGLALDFHNVEQTLGTG 463 ++S + D++M+ H QR+ + ++ L R++TIL L ++ + L TG Sbjct: 416 ISSISGRDDLMDYHRR-----QREERLREQEMERLERQRLETILSLCAEYTKPDSRLSTG 470 Query: 462 GTAASVRARCEMELDRIEKQFDECV 388 T V+ + EL++++ +E V Sbjct: 471 TTVEDVQ-KINKELEKLQLSDEESV 494
>VGLH_EHV1B (Q6DLH1) Glycoprotein H precursor| Length = 848 Score = 30.8 bits (68), Expect = 3.6 Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 2/73 (2%) Frame = +2 Query: 356 SLKDRILKRNTTHSSNCFSIRSNSISHLALTDAAVP--PVPRVCSTLWKSNANPSIVLTR 529 ++KDRI +T F++ + + SH+ LTD P P + S N N ++ T Sbjct: 488 AIKDRITWNSTMREVLFFAVGAAAGSHVILTDEPEPGAPAHKDASLFLSLNRNILLLCTA 547 Query: 530 LAIRAHNLSEATK 568 + +H +S K Sbjct: 548 MCTASHAVSAGLK 560
>VGLH_EHV1 (P68330) Glycoprotein H precursor| Length = 848 Score = 30.8 bits (68), Expect = 3.6 Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 2/73 (2%) Frame = +2 Query: 356 SLKDRILKRNTTHSSNCFSIRSNSISHLALTDAAVP--PVPRVCSTLWKSNANPSIVLTR 529 ++KDRI +T F++ + + SH+ LTD P P + S N N ++ T Sbjct: 488 AIKDRITWNSTMREVLFFAVGAAAGSHVILTDEPEPGAPAHKDASLFLSLNRNILLLCTA 547 Query: 530 LAIRAHNLSEATK 568 + +H +S K Sbjct: 548 MCTASHAVSAGLK 560
>UREE_STRVE (Q3S3T7) Urease accessory protein ureE| Length = 150 Score = 30.4 bits (67), Expect = 4.8 Identities = 18/47 (38%), Positives = 26/47 (55%) Frame = +1 Query: 280 GVRHVIVIVVDPRDQIREMGKVAHVQLER*DPQEEHDALVELLLDPI 420 GV +IV+ P+D + EMG AH+ P E DA + L +DP+ Sbjct: 72 GVESQDLIVISPKD-MDEMGITAHILGNTHKPIEVKDAKIYLEVDPV 117
>FTHS_METEX (Q83WS0) Formate--tetrahydrofolate ligase (EC 6.3.4.3)| (Formyltetrahydrofolate synthetase) (FHS) (FTHFS) Length = 556 Score = 30.0 bits (66), Expect = 6.2 Identities = 15/41 (36%), Positives = 21/41 (51%) Frame = +1 Query: 370 DPQEEHDALVELLLDPIQLHLASCPNRCRGPSGAESLLHIV 492 D EH L EL D +Q+ +C + G +GAE+L V Sbjct: 383 DTDAEHARLKELCRDRLQVEAITCKHWAEGGAGAEALAQAV 423
>ANGL4_MOUSE (Q9Z1P8) Angiopoietin-related protein 4 precursor| (Angiopoietin-like 4) (Hepatic fibrinogen/angiopoietin-related protein) (HFARP) (Fasting-induced adipose factor) (Secreted protein Bk89) (425O18-1) Length = 410 Score = 30.0 bits (66), Expect = 6.2 Identities = 15/49 (30%), Positives = 24/49 (48%) Frame = +1 Query: 331 EMGKVAHVQLER*DPQEEHDALVELLLDPIQLHLASCPNRCRGPSGAES 477 EM +AH L+ EH L ++ +A+C N C+GP G ++ Sbjct: 40 EMNLLAHGLLQLGHGLREHVERTRGQLGALERRMAACGNACQGPKGKDA 88
>ANGL4_RAT (Q6TMA8) Angiopoietin-related protein 4 precursor| (Angiopoietin-like 4) (Hepatic fibrinogen/angiopoietin-related protein) (HFARP) Length = 405 Score = 30.0 bits (66), Expect = 6.2 Identities = 15/48 (31%), Positives = 23/48 (47%) Frame = +1 Query: 331 EMGKVAHVQLER*DPQEEHDALVELLLDPIQLHLASCPNRCRGPSGAE 474 EM +AH L+ EH L ++ +A+C N C+GP G + Sbjct: 40 EMNLLAHGLLQLGHGLREHVERTRGQLGALERRMAACGNACQGPKGTD 87
>SVF1_EMENI (Q5BH63) Survival factor 1| Length = 546 Score = 29.6 bits (65), Expect = 8.1 Identities = 12/23 (52%), Positives = 16/23 (69%) Frame = +3 Query: 165 SAWPRQVYIHSPQMELKSTYNPI 233 S WPR V I SPQ+EL + +P+ Sbjct: 413 SPWPRYVTISSPQLELLTKLSPV 435 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 99,027,560 Number of Sequences: 219361 Number of extensions: 2118397 Number of successful extensions: 5999 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 5759 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5998 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6143359464 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
