ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd20e04 |
|---|---|
| Clone Library Name | barley_pub |
>CLIC1_MOUSE (Q9Z1Q5) Chloride intracellular channel protein 1 (Nuclear chloride| ion channel 27) (NCC27) Length = 240 Score = 31.2 bits (69), Expect = 1.1 Identities = 13/40 (32%), Positives = 21/40 (52%) Frame = -2 Query: 434 KLFHLQVXXEXFKGWKVPETXTSVHAYXXALFSRXSFVKT 315 KL +QV + ++G+ +PE VH Y ++R F T Sbjct: 182 KLHIVQVVCKKYRGFTIPEAFRGVHRYLSNAYAREEFAST 221
>CLIC1_HUMAN (O00299) Chloride intracellular channel protein 1 (Nuclear chloride| ion channel 27) (NCC27) (Chloride channel ABP) (Regulatory nuclear chloride ion channel protein) (hRNCC) Length = 240 Score = 31.2 bits (69), Expect = 1.1 Identities = 13/40 (32%), Positives = 21/40 (52%) Frame = -2 Query: 434 KLFHLQVXXEXFKGWKVPETXTSVHAYXXALFSRXSFVKT 315 KL +QV + ++G+ +PE VH Y ++R F T Sbjct: 182 KLHIVQVVCKKYRGFTIPEAFRGVHRYLSNAYAREEFAST 221
>OPA_DROME (P39768) Pair-rule protein odd-paired| Length = 609 Score = 31.2 bits (69), Expect = 1.1 Identities = 14/35 (40%), Positives = 16/35 (45%) Frame = +1 Query: 28 PLTVPPEHTHHNHTHKPGRGQTVHAASARLRQAEH 132 PL PP H HH H H+ AASA + H Sbjct: 522 PLGPPPSHHHHPHHHQAAPSPGAAAASASMLHHNH 556
>ZAP1_YEAST (P47043) Zinc-responsive transcriptional regulator ZAP1| Length = 880 Score = 30.8 bits (68), Expect = 1.5 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 3/67 (4%) Frame = +1 Query: 4 GSHHNTCTPLTVPPEHTHHN---HTHKPGRGQTVHAASARLRQAEHTAEARSHYSKPRST 174 GS++NT + +H HH H+HKP R V+ ++ + A TA+ ++ + Sbjct: 446 GSNNNTAGATSTDHQHHHHRIQFHSHKPNRNNIVN--NSGISAANTTADLTNNDLNDLIS 503 Query: 175 MRPSYRR 195 SY R Sbjct: 504 REYSYER 510
>MTP1_ARATH (Q9ZT63) Metal tolerance protein 1 (AtMTP1) (Zinc transporter| ZAT-1) (ZAT1p) [Contains: Metal tolerance protein 1 short form] Length = 398 Score = 30.4 bits (67), Expect = 1.9 Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 2/34 (5%) Frame = +1 Query: 10 HHNTCTPLTVPPEHTHHNHT--HKPGRGQTVHAA 105 HHN +TV H HH+H H G G+ H A Sbjct: 198 HHNHSHGVTVTTHHHHHDHEHGHSHGHGEDKHHA 231
>CREA_GIBFU (O94131) DNA-binding protein creA (Carbon catabolite repressor)| Length = 420 Score = 30.4 bits (67), Expect = 1.9 Identities = 16/47 (34%), Positives = 23/47 (48%) Frame = +1 Query: 31 LTVPPEHTHHNHTHKPGRGQTVHAASARLRQAEHTAEARSHYSKPRS 171 LT PP H++ NH H P G +H++ L RSH ++ S Sbjct: 215 LTAPPHHSN-NHRHHPYFGHGMHSSRGHLPTLSSYHMGRSHSNEDPS 260
>CAC1A_RABIT (P27884) Voltage-dependent P/Q-type calcium channel alpha-1A subunit| (Voltage-gated calcium channel alpha subunit Cav2.1) (Calcium channel, L type, alpha-1 polypeptide isoform 4) (Brain calcium channel I) (BI) Length = 2424 Score = 29.6 bits (65), Expect = 3.3 Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 2/35 (5%) Frame = +1 Query: 49 HTHHNHTHKPGR--GQTVHAASARLRQAEHTAEAR 147 H HH+H H PGR G+ SAR R+ A R Sbjct: 2219 HHHHHHHHHPGRGPGRVSPGVSARRRRRGPVARVR 2253
>QIN_AVIS3 (P56260) Transforming protein Qin (Oncogene Qin)| Length = 387 Score = 29.3 bits (64), Expect = 4.3 Identities = 16/44 (36%), Positives = 20/44 (45%) Frame = +1 Query: 7 SHHNTCTPLTVPPEHTHHNHTHKPGRGQTVHAASARLRQAEHTA 138 SHHN+ P H HH+H H P Q A+A + E A Sbjct: 37 SHHNSHHP-----HHHHHHHHHHPPPPQQPQRAAAAEEEDEEKA 75
>FOXGB_CHICK (Q90964) Forkhead box protein G1B (Forkhead-related protein FKHL1)| (Transcription factor BF-1) (Brain factor 1) (BF1) (CBF-1) (Proto-oncogene C-QIN) (N-62-5) (CEQ 3-1) Length = 451 Score = 29.3 bits (64), Expect = 4.3 Identities = 16/44 (36%), Positives = 20/44 (45%) Frame = +1 Query: 7 SHHNTCTPLTVPPEHTHHNHTHKPGRGQTVHAASARLRQAEHTA 138 SHHN+ P H HH+H H P Q A+A + E A Sbjct: 37 SHHNSHHP-----HHHHHHHHHHPPPPQQPQRAAAAEEEDEEKA 75
>FRAS1_MOUSE (Q80T14) Extracellular matrix protein FRAS1 precursor| Length = 4010 Score = 29.3 bits (64), Expect = 4.3 Identities = 13/33 (39%), Positives = 15/33 (45%), Gaps = 5/33 (15%) Frame = -1 Query: 165 GFGIMRASLCCVLCLSQARTC-----CVDCLPP 82 G G +A C+ C Q TC C CLPP Sbjct: 454 GLGFYQAGSLCLACQPQCSTCTNGLECSSCLPP 486
>RHAD_YERPS (Q66FF5) Rhamnulose-1-phosphate aldolase (EC 4.1.2.19)| Length = 274 Score = 29.3 bits (64), Expect = 4.3 Identities = 10/17 (58%), Positives = 12/17 (70%) Frame = +3 Query: 219 WHNGWCSRSGGRXSLRV 269 WH GW R+GG SLR+ Sbjct: 21 WHKGWDERNGGNISLRL 37
>RHAD_YERPE (Q8ZJ03) Rhamnulose-1-phosphate aldolase (EC 4.1.2.19)| Length = 274 Score = 29.3 bits (64), Expect = 4.3 Identities = 10/17 (58%), Positives = 12/17 (70%) Frame = +3 Query: 219 WHNGWCSRSGGRXSLRV 269 WH GW R+GG SLR+ Sbjct: 21 WHKGWDERNGGNISLRL 37
>YJZ4_YEAST (P47095) Hypothetical protein YJR024c| Length = 244 Score = 28.9 bits (63), Expect = 5.7 Identities = 8/20 (40%), Positives = 14/20 (70%) Frame = +3 Query: 207 CHHYWHNGWCSRSGGRXSLR 266 C ++HN WC+ +GG S++ Sbjct: 24 CKQFFHNNWCTGTGGGISIK 43
>CLIC1_RABIT (Q95MF9) Chloride intracellular channel protein 1| Length = 240 Score = 28.9 bits (63), Expect = 5.7 Identities = 13/40 (32%), Positives = 20/40 (50%) Frame = -2 Query: 434 KLFHLQVXXEXFKGWKVPETXTSVHAYXXALFSRXSFVKT 315 KL +QV + +G+ +PE VH Y ++R F T Sbjct: 182 KLHIVQVVCKKNRGFTIPEVFRGVHRYLSNAYAREEFAST 221
>IST2_YEAST (P38250) Increased sodium tolerance protein 2| Length = 946 Score = 28.9 bits (63), Expect = 5.7 Identities = 14/54 (25%), Positives = 24/54 (44%) Frame = +1 Query: 7 SHHNTCTPLTVPPEHTHHNHTHKPGRGQTVHAASARLRQAEHTAEARSHYSKPR 168 S++NT T T HH+H H R V + + E ++ + + KP+ Sbjct: 880 SNNNTTTTTTTDATQPHHHHHHHRHRDAGVKNVTNNSKTTESSSSSSAAKEKPK 933
>HYCG_ECOLI (P16433) Formate hydrogenlyase subunit 7 (FHL subunit 7)| (Hydrogenase-3 component G) Length = 255 Score = 28.9 bits (63), Expect = 5.7 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 1/43 (2%) Frame = -2 Query: 137 AVCSACRKRALAAWTVCPLPGLCV*LW-CVCSGGTVKGVHVLW 12 AV A R AL AW P P +C+ C SGG ++ +W Sbjct: 87 AVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVW 129
>ASR_ECOLI (P36560) Acid shock protein precursor| Length = 102 Score = 28.5 bits (62), Expect = 7.4 Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 7/61 (11%) Frame = +1 Query: 25 TPLTVPPEHTHHNHTHKPGRGQTVHAA-------SARLRQAEHTAEARSHYSKPRSTMRP 183 T P + THH HK Q AA A + E A+A ++K S +P Sbjct: 34 TTKAAPAKTTHHKKQHKAAPAQKAQAAKKHHKNTKAEQKAPEQKAQAAKKHAKKHSHQQP 93 Query: 184 S 186 + Sbjct: 94 A 94
>ASR_ECOL6 (Q8CW15) Acid shock protein precursor| Length = 102 Score = 28.5 bits (62), Expect = 7.4 Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 7/61 (11%) Frame = +1 Query: 25 TPLTVPPEHTHHNHTHKPGRGQTVHA-------ASARLRQAEHTAEARSHYSKPRSTMRP 183 T P + THH HK Q A A A + E A+A ++K S +P Sbjct: 34 TTKAAPAKTTHHKKQHKAAPAQKAQAAKKHHKNAKAEQKAPEQKAQAAKKHAKKHSHQQP 93 Query: 184 S 186 + Sbjct: 94 A 94
>ASR_ECO57 (Q8X783) Acid shock protein precursor| Length = 102 Score = 28.5 bits (62), Expect = 7.4 Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 7/61 (11%) Frame = +1 Query: 25 TPLTVPPEHTHHNHTHKPGRGQTVHAA-------SARLRQAEHTAEARSHYSKPRSTMRP 183 T P + THH HK Q AA A + E A+A ++K S +P Sbjct: 34 TTKAAPAKTTHHKKQHKAAPAQKAQAAKKHHKNTKAEQKAPEQKAQAAKKHAKKHSHQQP 93 Query: 184 S 186 + Sbjct: 94 A 94
>FRAS1_HUMAN (Q86XX4) Extracellular matrix protein FRAS1 precursor| Length = 4007 Score = 28.5 bits (62), Expect = 7.4 Identities = 13/39 (33%), Positives = 15/39 (38%), Gaps = 5/39 (12%) Frame = -1 Query: 183 WAHGRSGFGIMRASLCCVLCLSQARTC-----CVDCLPP 82 W G G +A C+ C Q TC C C PP Sbjct: 449 WCVHSCGLGFYQAGSLCLACQPQCSTCTSGLECSSCQPP 487
>TBX19_MOUSE (Q99ME7) T-box transcription factor TBX19 (T-box protein 19) (T-box| factor, pituitary) Length = 446 Score = 28.5 bits (62), Expect = 7.4 Identities = 11/25 (44%), Positives = 14/25 (56%) Frame = +1 Query: 7 SHHNTCTPLTVPPEHTHHNHTHKPG 81 S++ TPL +P HTHH H G Sbjct: 258 SNYQYATPLPLPAPHTHHGCEHYAG 282
>VE1_BPV2 (P11298) Replication protein E1 (EC 3.6.1.-) (ATP-dependent| helicase E1) Length = 604 Score = 28.5 bits (62), Expect = 7.4 Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 1/52 (1%) Frame = +3 Query: 15 QHMHTLDCTTRT-HTPQSHTQARQGADSPRSKCALATGRAHSRGSLALFQTQ 167 Q H DC T H ++ TQA +++C LATG + L F Q Sbjct: 353 QAKHVKDCATMVRHYLRAETQALSMPAYIKTRCKLATGEGSWKSILTFFNYQ 404
>VE1_BPV1 (P03116) Replication protein E1| Length = 605 Score = 28.5 bits (62), Expect = 7.4 Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 1/52 (1%) Frame = +3 Query: 15 QHMHTLDCTTRT-HTPQSHTQARQGADSPRSKCALATGRAHSRGSLALFQTQ 167 Q H DC T H ++ TQA +++C LATG + L F Q Sbjct: 354 QAKHVKDCATMVRHYLRAETQALSMPAYIKARCKLATGEGSWKSILTFFNYQ 405
>MINK1_HUMAN (Q8N4C8) Misshapen-like kinase 1 (EC 2.7.11.1) (Mitogen-activated| protein kinase kinase kinase kinase 6) (MAPK/ERK kinase kinase kinase 6) (MEK kinase kinase 6) (MEKKK 6) (Misshapen/NIK-related kinase) (GCK family kinase MiNK) Length = 1332 Score = 28.5 bits (62), Expect = 7.4 Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 6/48 (12%) Frame = +2 Query: 59 TITHTSQAGGRQSTQQVRACDRQST------QQRLARIIPNPDRPCAQ 184 T +TS AGG + Q VRA R ++ Q+R R P P P AQ Sbjct: 677 TALNTSGAGGSRPAQAVRARPRSNSAWQIYLQRRAERGTPKPPGPPAQ 724
>SI1L2_MOUSE (Q80TE4) Signal-induced proliferation-associated 1-like protein 2| Length = 1722 Score = 28.1 bits (61), Expect = 9.7 Identities = 14/48 (29%), Positives = 22/48 (45%) Frame = +3 Query: 63 SHTQARQGADSPRSKCALATGRAHSRGSLALFQTQIDHAPKLQTRPYY 206 SH+ Q + SP + C+ +TG S + AP T+PY+ Sbjct: 1341 SHSSGSQHSGSPSAHCSKSTGSLDSSKGYIVTHGGGQQAPGAVTKPYH 1388 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 51,917,313 Number of Sequences: 219361 Number of extensions: 887995 Number of successful extensions: 3536 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 3180 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3459 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2511994855 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
