ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd20e04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY074784.1| Triticum aestivum dehydroascorbate reductase (DHA... 226 5e-56
2gb|DQ090998.1| Puccinellia tenuiflora dehydroascorbate reductase... 176 4e-41
3gb|DQ093638.1| Eustoma grandiflorum dehydroascorbate reductase p... 174 2e-40
4emb|AJ622892.1| Triticum durum partial mRNA for DRP5 protein (dr... 72 2e-09
5gb|AC078977.6| Oryza sativa (japonica cultivar-group) chromosome... 54 4e-04
6gb|AC108504.2| Oryza sativa (japonica cultivar-group) chromosome... 54 4e-04
7dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 54 4e-04
8gb|AY074786.1| Oryza sativa dehydroascorbate reductase (DHAR) mR... 54 4e-04
9dbj|AK070895.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 4e-04
10dbj|AK061836.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 4e-04
11dbj|AB037970.1| Oryza sativa (japonica cultivar-group) DHAR1 mRN... 54 4e-04
12gb|AY106435.1| Zea mays PCO106999 mRNA sequence 52 0.002
13gb|AC109221.32| Mus musculus chromosome 7, clone RP23-207N2, com... 42 1.5
14dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, comp... 42 1.5
15gb|AC168056.3| Mus musculus BAC clone RP24-189B1 from chromosome... 40 5.8
16ref|XM_714685.1| Candida albicans SC5314 hypothetical protein (C... 40 5.8
17ref|XM_714802.1| Candida albicans SC5314 hypothetical protein (C... 40 5.8
18gb|AC144402.2| Atelerix albiventris clone LBNL4-89B6, complete s... 40 5.8
19emb|BX088727.14| Zebrafish DNA sequence from clone DKEY-218A22 i... 40 5.8
20emb|Z84494.1|HSLUCA7 Human DNA sequence from clone XXcos-7 on ch... 40 5.8 
>gb|AY074784.1| Triticum aestivum dehydroascorbate reductase (DHAR) mRNA, complete
           cds
          Length = 956

 Score =  226 bits (114), Expect = 5e-56
 Identities = 158/177 (89%)
 Strand = Plus / Minus

                                                                       
Query: 259 gcttacgggttcaccttcggcgcccacccggngatcangttctncttggtcgncttggtc 318
           |||||||||||||| |||||||||||||||| ||||| ||||| |||||||| |||||||
Sbjct: 715 gcttacgggttcactttcggcgcccacccggcgatcaggttctccttggtcgccttggtc 656

                                                                       
Query: 319 ttgacgaacgactngcggctgaagagagcctnggngtaggcatgnacgctggtcantgtt 378
           ||||||||||||| ||||||||||||||||| || ||||||||| ||||||||||  |||
Sbjct: 655 ttgacgaacgactcgcggctgaagagagcctcggtgtaggcatggacgctggtcagggtt 596

                                                                    
Query: 379 tcaggnaccttccagcctttgaantgctccangncaacctggaggtggaagagcttc 435
           ||||| ||||||||||| ||||| ||||||| | | |||||||| ||| ||||||||
Sbjct: 595 tcagggaccttccagcccttgaagtgctccagggcgacctggagatggtagagcttc 539



 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 140 aggctcgctcgcattattccaa 161
           ||||||||||||||||||||||
Sbjct: 806 aggctcgctcgcattattccaa 785
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>gb|DQ090998.1| Puccinellia tenuiflora dehydroascorbate reductase protein mRNA,
           partial cds
          Length = 202

 Score =  176 bits (89), Expect = 4e-41
 Identities = 151/176 (85%)
 Strand = Plus / Minus

                                                                       
Query: 259 gcttacgggttcaccttcggcgcccacccggngatcangttctncttggtcgncttggtc 318
           |||||||||||||| || |||||||| |||| ||||| ||||| |||||| | |||||||
Sbjct: 200 gcttacgggttcactttgggcgcccatccggcgatcaggttctccttggtgggcttggtc 141

                                                                       
Query: 319 ttgacgaacgactngcggctgaagagagcctnggngtaggcatgnacgctggtcantgtt 378
           |||||||| || |  |||||||| ||||||| || ||||||||| ||||||||||  |||
Sbjct: 140 ttgacgaaggattcccggctgaacagagccttggtgtaggcatggacgctggtcagggtt 81

                                                                   
Query: 379 tcaggnaccttccagcctttgaantgctccangncaacctggaggtggaagagctt 434
           || || |||||||| |||||||| ||||||| | |||||||||| |||||||||||
Sbjct: 80  tcggggaccttccatcctttgaaatgctccagggcaacctggagatggaagagctt 25
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>gb|DQ093638.1| Eustoma grandiflorum dehydroascorbate reductase protein mRNA,
           partial cds
          Length = 195

 Score =  174 bits (88), Expect = 2e-40
 Identities = 147/171 (85%)
 Strand = Plus / Minus

                                                                       
Query: 264 cgggttcaccttcggcgcccacccggngatcangttctncttggtcgncttggtcttgac 323
           ||||||||| || |||||||| |||| ||||| ||||| |||||| | ||||||||||||
Sbjct: 195 cgggttcactttgggcgcccatccggcgatcaggttctccttggtgggcttggtcttgac 136

                                                                       
Query: 324 gaacgactngcggctgaagagagcctnggngtaggcatgnacgctggtcantgtttcagg 383
           ||| || |  |||||||| ||||||| || ||||||||| ||||||||||  ||||||||
Sbjct: 135 gaaggattcccggctgaacagagccttggtgtaggcatggacgctggtcagggtttcagg 76

                                                              
Query: 384 naccttccagcctttgaantgctccangncaacctggaggtggaagagctt 434
            |||||||| |||||||| ||||||| | |||||||||| |||||||||||
Sbjct: 75  gaccttccatcctttgaaatgctccagggcaacctggagatggaagagctt 25
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>emb|AJ622892.1| Triticum durum partial mRNA for DRP5 protein (drg5 gene)
          Length = 478

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 53/60 (88%)
 Strand = Plus / Plus

                                                                       
Query: 376 gtttcaggnaccttccagcctttgaantgctccangncaacctggaggtggaagagcttc 435
           |||||||| ||||||||||| ||||| ||||||| | | |||||||||||| ||||||||
Sbjct: 7   gtttcagggaccttccagcccttgaagtgctccagggcgacctggaggtggtagagcttc 66
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>gb|AC078977.6| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0496H07,
             complete sequence
          Length = 164477

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 42/48 (87%)
 Strand = Plus / Plus

                                                             
Query: 387   cttccagcctttgaantgctccangncaacctggaggtggaagagctt 434
             ||||||||||||||| |||||||   |||||||||| ||| |||||||
Sbjct: 50726 cttccagcctttgaaatgctccagagcaacctggagatggtagagctt 50773
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>gb|AC108504.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1654_B10,
              complete sequence
          Length = 140282

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 42/48 (87%)
 Strand = Plus / Plus

                                                              
Query: 387    cttccagcctttgaantgctccangncaacctggaggtggaagagctt 434
              ||||||||||||||| |||||||   |||||||||| ||| |||||||
Sbjct: 118745 cttccagcctttgaaatgctccagagcaacctggagatggtagagctt 118792
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5,
              complete sequence
          Length = 29737217

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 42/48 (87%)
 Strand = Plus / Plus

                                                              
Query: 387    cttccagcctttgaantgctccangncaacctggaggtggaagagctt 434
              ||||||||||||||| |||||||   |||||||||| ||| |||||||
Sbjct: 846303 cttccagcctttgaaatgctccagagcaacctggagatggtagagctt 846350
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>gb|AY074786.1| Oryza sativa dehydroascorbate reductase (DHAR) mRNA, complete cds
          Length = 1067

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                           
Query: 387 cttccagcctttgaantgctccangncaacctggaggtggaagagctt 434
           ||||||||||||||| |||||||   |||||||||| ||| |||||||
Sbjct: 595 cttccagcctttgaaatgctccagagcaacctggagatggtagagctt 548
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>dbj|AK070895.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023074C02, full
           insert sequence
          Length = 1198

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                           
Query: 387 cttccagcctttgaantgctccangncaacctggaggtggaagagctt 434
           ||||||||||||||| |||||||   |||||||||| ||| |||||||
Sbjct: 596 cttccagcctttgaaatgctccagagcaacctggagatggtagagctt 549
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>dbj|AK061836.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-040-D08, full
           insert sequence
          Length = 1053

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                           
Query: 387 cttccagcctttgaantgctccangncaacctggaggtggaagagctt 434
           ||||||||||||||| |||||||   |||||||||| ||| |||||||
Sbjct: 600 cttccagcctttgaaatgctccagagcaacctggagatggtagagctt 553
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>dbj|AB037970.1| Oryza sativa (japonica cultivar-group) DHAR1 mRNA for GSH-dependent
           dehydroascorbate reductase 1, complete cds
          Length = 1044

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                           
Query: 387 cttccagcctttgaantgctccangncaacctggaggtggaagagctt 434
           ||||||||||||||| |||||||   |||||||||| ||| |||||||
Sbjct: 565 cttccagcctttgaaatgctccagagcaacctggagatggtagagctt 518
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>gb|AY106435.1| Zea mays PCO106999 mRNA sequence
          Length = 1141

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 62/76 (81%)
 Strand = Plus / Minus

                                                                       
Query: 334 cggctgaagagagcctnggngtaggcatgnacgctggtcantgtttcaggnaccttccag 393
           |||||||| ||||||| || |||||| || ||| |||| |   |||| || | |||||||
Sbjct: 662 cggctgaaaagagccttggtgtaggcgtggacgttggttaggttttctgggatcttccag 603

                           
Query: 394 cctttgaantgctcca 409
           |||||||| |||||||
Sbjct: 602 cctttgaaatgctcca 587
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>gb|AC109221.32| Mus musculus chromosome 7, clone RP23-207N2, complete sequence
          Length = 195657

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 74    agccaggcagggggcagacag 94
             |||||||||||||||||||||
Sbjct: 71257 agccaggcagggggcagacag 71277
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>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome
          Length = 3566135

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 263    acgggttcaccttcggcgccc 283
              |||||||||||||||||||||
Sbjct: 209716 acgggttcaccttcggcgccc 209736
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>gb|AC168056.3| Mus musculus BAC clone RP24-189B1 from chromosome 13, complete sequence
          Length = 179458

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 416   cctggaggtggaagagcttc 435
             ||||||||||||||||||||
Sbjct: 51516 cctggaggtggaagagcttc 51497
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>ref|XM_714685.1| Candida albicans SC5314 hypothetical protein (CaO19_14092), mRNA
          Length = 1569

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 201  tactactgccatcactactggcac 224
            ||||||||||| ||||||||||||
Sbjct: 1363 tactactgccagcactactggcac 1340
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>ref|XM_714802.1| Candida albicans SC5314 hypothetical protein (CaO19_6800), mRNA
          Length = 1569

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 201  tactactgccatcactactggcac 224
            ||||||||||| ||||||||||||
Sbjct: 1363 tactactgccagcactactggcac 1340
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>gb|AC144402.2| Atelerix albiventris clone LBNL4-89B6, complete sequence
          Length = 161430

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 121    caggcagagcacacagcaga 140
              ||||||||||||||||||||
Sbjct: 111810 caggcagagcacacagcaga 111829
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>emb|BX088727.14| Zebrafish DNA sequence from clone DKEY-218A22 in linkage group 2,
             complete sequence
          Length = 185178

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 147   ctcgcattattccaaaccca 166
             ||||||||||||||||||||
Sbjct: 28852 ctcgcattattccaaaccca 28833
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>emb|Z84494.1|HSLUCA7 Human DNA sequence from clone XXcos-7 on chromosome 3, complete
             sequence
          Length = 16950

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 74    agccaggcagggggcagaca 93
             ||||||||||||||||||||
Sbjct: 12882 agccaggcagggggcagaca 12863


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,658,060
Number of Sequences: 3902068
Number of extensions: 1658060
Number of successful extensions: 28523
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 28460
Number of HSP's gapped (non-prelim): 63
length of query: 435
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 413
effective length of database: 17,147,199,772
effective search space: 7081793505836
effective search space used: 7081793505836
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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