Clone Name | rbasd20e03 |
---|---|
Clone Library Name | barley_pub |
>gb|AY074784.1| Triticum aestivum dehydroascorbate reductase (DHAR) mRNA, complete cds Length = 956 Score = 262 bits (132), Expect = 9e-67 Identities = 171/186 (91%) Strand = Plus / Minus Query: 259 ggcgggggagcttacgggttcaccttcggcgcccacccggcgatcangttctncttggtc 318 |||||| | |||||||||||||| |||||||||||||||||||||| ||||| ||||||| Sbjct: 724 ggcgggagggcttacgggttcactttcggcgcccacccggcgatcaggttctccttggtc 665 Query: 319 ggcttggtcttgacgaacgactngcggctgaagagagcctnggngtaggcatggacgctg 378 | |||||||||||||||||||| ||||||||||||||||| || |||||||||||||||| Sbjct: 664 gccttggtcttgacgaacgactcgcggctgaagagagcctcggtgtaggcatggacgctg 605 Query: 379 gtcagtgtttcagggaccttccagcctttgaagtgctccanggcaacctggaggtggaag 438 ||||| |||||||||||||||||||| ||||||||||||| ||| |||||||| ||| || Sbjct: 604 gtcagggtttcagggaccttccagcccttgaagtgctccagggcgacctggagatggtag 545 Query: 439 agcttc 444 |||||| Sbjct: 544 agcttc 539 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Minus Query: 149 aggctcgctcgcattattccaa 170 |||||||||||||||||||||| Sbjct: 806 aggctcgctcgcattattccaa 785
>gb|DQ090998.1| Puccinellia tenuiflora dehydroascorbate reductase protein mRNA, partial cds Length = 202 Score = 210 bits (106), Expect = 3e-51 Identities = 157/176 (89%) Strand = Plus / Minus Query: 268 gcttacgggttcaccttcggcgcccacccggcgatcangttctncttggtcggcttggtc 327 |||||||||||||| || |||||||| |||||||||| ||||| |||||| ||||||||| Sbjct: 200 gcttacgggttcactttgggcgcccatccggcgatcaggttctccttggtgggcttggtc 141 Query: 328 ttgacgaacgactngcggctgaagagagcctnggngtaggcatggacgctggtcagtgtt 387 |||||||| || | |||||||| ||||||| || ||||||||||||||||||||| ||| Sbjct: 140 ttgacgaaggattcccggctgaacagagccttggtgtaggcatggacgctggtcagggtt 81 Query: 388 tcagggaccttccagcctttgaagtgctccanggcaacctggaggtggaagagctt 443 || ||||||||||| |||||||| ||||||| |||||||||||| ||||||||||| Sbjct: 80 tcggggaccttccatcctttgaaatgctccagggcaacctggagatggaagagctt 25
>gb|DQ093638.1| Eustoma grandiflorum dehydroascorbate reductase protein mRNA, partial cds Length = 195 Score = 208 bits (105), Expect = 1e-50 Identities = 153/171 (89%) Strand = Plus / Minus Query: 273 cgggttcaccttcggcgcccacccggcgatcangttctncttggtcggcttggtcttgac 332 ||||||||| || |||||||| |||||||||| ||||| |||||| |||||||||||||| Sbjct: 195 cgggttcactttgggcgcccatccggcgatcaggttctccttggtgggcttggtcttgac 136 Query: 333 gaacgactngcggctgaagagagcctnggngtaggcatggacgctggtcagtgtttcagg 392 ||| || | |||||||| ||||||| || ||||||||||||||||||||| |||||||| Sbjct: 135 gaaggattcccggctgaacagagccttggtgtaggcatggacgctggtcagggtttcagg 76 Query: 393 gaccttccagcctttgaagtgctccanggcaacctggaggtggaagagctt 443 ||||||||| |||||||| ||||||| |||||||||||| ||||||||||| Sbjct: 75 gaccttccatcctttgaaatgctccagggcaacctggagatggaagagctt 25
>emb|AJ622892.1| Triticum durum partial mRNA for DRP5 protein (drg5 gene) Length = 478 Score = 93.7 bits (47), Expect = 5e-16 Identities = 61/66 (92%) Strand = Plus / Plus Query: 379 gtcagtgtttcagggaccttccagcctttgaagtgctccanggcaacctggaggtggaag 438 ||||| |||||||||||||||||||| ||||||||||||| ||| |||||||||||| || Sbjct: 1 gtcagggtttcagggaccttccagcccttgaagtgctccagggcgacctggaggtggtag 60 Query: 439 agcttc 444 |||||| Sbjct: 61 agcttc 66
>gb|AY106435.1| Zea mays PCO106999 mRNA sequence Length = 1141 Score = 81.8 bits (41), Expect = 2e-12 Identities = 134/167 (80%) Strand = Plus / Minus Query: 277 ttcaccttcggcgcccacccggcgatcangttctncttggtcggcttggtcttgacgaac 336 |||||||| |||||||| || || |||| || || || || ||||| |||||||| || Sbjct: 728 ttcaccttgggcgcccatcccgcaatcacgtgctcctcggatggcttagtcttgacaaaa 669 Query: 337 gactngcggctgaagagagcctnggngtaggcatggacgctggtcagtgtttcagggacc 396 || | |||||||| ||||||| || |||||| |||||| |||| || |||| |||| | Sbjct: 668 gattcacggctgaaaagagccttggtgtaggcgtggacgttggttaggttttctgggatc 609 Query: 397 ttccagcctttgaagtgctccanggcaacctggaggtggaagagctt 443 |||||||||||||| ||||||| || | ||| |||||||| ||||| Sbjct: 608 ttccagcctttgaaatgctccagtgcgatctgtaggtggaaaagctt 562
>gb|AC078977.6| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0496H07, complete sequence Length = 164477 Score = 60.0 bits (30), Expect = 6e-06 Identities = 47/53 (88%) Strand = Plus / Plus Query: 391 gggaccttccagcctttgaagtgctccanggcaacctggaggtggaagagctt 443 |||| ||||||||||||||| ||||||| ||||||||||| ||| ||||||| Sbjct: 50721 gggatcttccagcctttgaaatgctccagagcaacctggagatggtagagctt 50773
>gb|AC108504.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1654_B10, complete sequence Length = 140282 Score = 60.0 bits (30), Expect = 6e-06 Identities = 47/53 (88%) Strand = Plus / Plus Query: 391 gggaccttccagcctttgaagtgctccanggcaacctggaggtggaagagctt 443 |||| ||||||||||||||| ||||||| ||||||||||| ||| ||||||| Sbjct: 118740 gggatcttccagcctttgaaatgctccagagcaacctggagatggtagagctt 118792
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 60.0 bits (30), Expect = 6e-06 Identities = 47/53 (88%) Strand = Plus / Plus Query: 391 gggaccttccagcctttgaagtgctccanggcaacctggaggtggaagagctt 443 |||| ||||||||||||||| ||||||| ||||||||||| ||| ||||||| Sbjct: 846298 gggatcttccagcctttgaaatgctccagagcaacctggagatggtagagctt 846350
>gb|AY074786.1| Oryza sativa dehydroascorbate reductase (DHAR) mRNA, complete cds Length = 1067 Score = 60.0 bits (30), Expect = 6e-06 Identities = 47/53 (88%) Strand = Plus / Minus Query: 391 gggaccttccagcctttgaagtgctccanggcaacctggaggtggaagagctt 443 |||| ||||||||||||||| ||||||| ||||||||||| ||| ||||||| Sbjct: 600 gggatcttccagcctttgaaatgctccagagcaacctggagatggtagagctt 548
>dbj|AK070895.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023074C02, full insert sequence Length = 1198 Score = 60.0 bits (30), Expect = 6e-06 Identities = 47/53 (88%) Strand = Plus / Minus Query: 391 gggaccttccagcctttgaagtgctccanggcaacctggaggtggaagagctt 443 |||| ||||||||||||||| ||||||| ||||||||||| ||| ||||||| Sbjct: 601 gggatcttccagcctttgaaatgctccagagcaacctggagatggtagagctt 549
>dbj|AK061836.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-040-D08, full insert sequence Length = 1053 Score = 60.0 bits (30), Expect = 6e-06 Identities = 47/53 (88%) Strand = Plus / Minus Query: 391 gggaccttccagcctttgaagtgctccanggcaacctggaggtggaagagctt 443 |||| ||||||||||||||| ||||||| ||||||||||| ||| ||||||| Sbjct: 605 gggatcttccagcctttgaaatgctccagagcaacctggagatggtagagctt 553
>dbj|AB037970.1| Oryza sativa (japonica cultivar-group) DHAR1 mRNA for GSH-dependent dehydroascorbate reductase 1, complete cds Length = 1044 Score = 60.0 bits (30), Expect = 6e-06 Identities = 47/53 (88%) Strand = Plus / Minus Query: 391 gggaccttccagcctttgaagtgctccanggcaacctggaggtggaagagctt 443 |||| ||||||||||||||| ||||||| ||||||||||| ||| ||||||| Sbjct: 570 gggatcttccagcctttgaaatgctccagagcaacctggagatggtagagctt 518
>gb|AE017283.1| Propionibacterium acnes KPA171202, complete genome Length = 2560265 Score = 44.1 bits (22), Expect = 0.38 Identities = 25/26 (96%) Strand = Plus / Minus Query: 315 ggtcggcttggtcttgacgaacgact 340 ||||||| |||||||||||||||||| Sbjct: 1119794 ggtcggcctggtcttgacgaacgact 1119769
>gb|AC109221.32| Mus musculus chromosome 7, clone RP23-207N2, complete sequence Length = 195657 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 83 agccaggcagggggcagacag 103 ||||||||||||||||||||| Sbjct: 71257 agccaggcagggggcagacag 71277
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 272 acgggttcaccttcggcgccc 292 ||||||||||||||||||||| Sbjct: 209716 acgggttcaccttcggcgccc 209736
>gb|AC168056.3| Mus musculus BAC clone RP24-189B1 from chromosome 13, complete sequence Length = 179458 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 425 cctggaggtggaagagcttc 444 |||||||||||||||||||| Sbjct: 51516 cctggaggtggaagagcttc 51497
>ref|XM_366481.1| Magnaporthe grisea 70-15 chromosome VII predicted protein (MG02557.4) partial mRNA Length = 966 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 318 cggcttggtcttgacgaacg 337 |||||||||||||||||||| Sbjct: 216 cggcttggtcttgacgaacg 197
>ref|XM_714685.1| Candida albicans SC5314 hypothetical protein (CaO19_14092), mRNA Length = 1569 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 210 tactactgccatcactactggcac 233 ||||||||||| |||||||||||| Sbjct: 1363 tactactgccagcactactggcac 1340
>ref|XM_714802.1| Candida albicans SC5314 hypothetical protein (CaO19_6800), mRNA Length = 1569 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 210 tactactgccatcactactggcac 233 ||||||||||| |||||||||||| Sbjct: 1363 tactactgccagcactactggcac 1340
>gb|AC144402.2| Atelerix albiventris clone LBNL4-89B6, complete sequence Length = 161430 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 130 caggcagagcacacagcaga 149 |||||||||||||||||||| Sbjct: 111810 caggcagagcacacagcaga 111829
>gb|AC063918.21| Homo sapiens 3 BAC RP11-49C18 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 97001 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 386 tttcagggaccttccagcct 405 |||||||||||||||||||| Sbjct: 18007 tttcagggaccttccagcct 17988
>emb|BX088727.14| Zebrafish DNA sequence from clone DKEY-218A22 in linkage group 2, complete sequence Length = 185178 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 156 ctcgcattattccaaaccca 175 |||||||||||||||||||| Sbjct: 28852 ctcgcattattccaaaccca 28833
>emb|Z84494.1|HSLUCA7 Human DNA sequence from clone XXcos-7 on chromosome 3, complete sequence Length = 16950 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 83 agccaggcagggggcagaca 102 |||||||||||||||||||| Sbjct: 12882 agccaggcagggggcagaca 12863 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,405,458 Number of Sequences: 3902068 Number of extensions: 2405458 Number of successful extensions: 45518 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 23 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 45429 Number of HSP's gapped (non-prelim): 89 length of query: 444 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 422 effective length of database: 17,147,199,772 effective search space: 7236118303784 effective search space used: 7236118303784 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)