ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd20e01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK064988.1| Oryza sativa (japonica cultivar-group) cDNA clon... 492 e-136
2dbj|AK060749.1| Oryza sativa (japonica cultivar-group) cDNA clon... 484 e-133
3gb|AC097277.6| Oryza sativa chromosome 3 BAC OSJNBa0022C08 genom... 182 1e-42
4gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 182 1e-42
5dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 182 1e-42
6ref|NM_191480.1| Oryza sativa (japonica cultivar-group), predic... 44 0.58
7ref|NM_191478.1| Oryza sativa (japonica cultivar-group), predic... 44 0.58
8emb|BX000359.7| Mouse DNA sequence from clone RP23-343C18 on chr... 44 0.58
9gb|AC110794.3| Homo sapiens BAC clone RP11-598O12 from 4, comple... 44 0.58
10gb|AC129593.4| Mus musculus BAC clone RP24-142E6 from chromosome... 42 2.3
11gb|AC099589.12| Mus musculus chromosome 1, clone RP23-337A19, co... 42 2.3
12gb|AC104100.6| Mus musculus BAC clone RP24-374D12 from chromosom... 42 2.3
13gb|AE016819.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10... 42 2.3
14ref|NM_210994.1| Eremothecium gossypii AFR093Wp (AFR093W), mRNA 42 2.3
15emb|BX537323.9| Zebrafish DNA sequence from clone DKEYP-122E2 in... 42 2.3
16gb|AC133651.4| Mus musculus BAC clone RP24-239C15 from 1, comple... 42 2.3
17gb|AC161878.3| Mus musculus BAC clone RP23-303B4 from chromosome... 42 2.3
18gb|AC151524.2| Medicago truncatula chromosome 7 BAC clone mth2-6... 40 9.0
19gb|AC170260.2| Mus musculus BAC clone RP24-347N1 from chromosome... 40 9.0
20gb|AC114629.12| Mus musculus chromosome 1, clone RP24-111F20, co... 40 9.0
21gb|AY369378.1| Feline immunodeficiency virus isolate CaONC01 gag... 40 9.0
22gb|AF077542.1| Caenorhabditis elegans cosmid Y57G7A, complete se... 40 9.0
23emb|Z74473.1|CEF56H9 Caenorhabditis elegans Cosmid F56H9, comple... 40 9.0
24gb|AC123054.2| Mus musculus BAC clone RP24-220N11 from 5, comple... 40 9.0
25gb|AC112491.4| Homo sapiens 3 BAC RP11-3P17 (Roswell Park Cancer... 40 9.0
26emb|BX927150.1| Corynebacterium glutamicum ATCC 13032, IS finger... 40 9.0
27emb|BX470127.2| Mouse DNA sequence from clone RP24-280A6 on chro... 40 9.0
28gb|AC087302.7| Homo sapiens chromosome 17, clone RP11-761L11, co... 40 9.0
29gb|AC104639.3| Homo sapiens 3q BAC RP11-672L16 (Roswell Park Can... 40 9.0
30gb|AC098680.3| Homo sapiens BAC clone RP11-600L4 from 4, complet... 40 9.0
31gb|AC026473.7| Homo sapiens chromosome 16 clone RP11-51O6, compl... 40 9.0
32ref|NM_073761.3| Caenorhabditis elegans abnormal cell LINeage fa... 40 9.0
33gb|AC009169.9| Homo sapiens chromosome 16 clone RP11-90K18, comp... 40 9.0
34dbj|BA000036.3| Corynebacterium glutamicum ATCC 13032 DNA, compl... 40 9.0
35gb|AC079776.5| Homo sapiens BAC clone RP11-315H12 from 2, comple... 40 9.0
36emb|BX927258.8| Zebrafish DNA sequence from clone CH211-279M15 i... 40 9.0
37emb|CR361565.8| Zebrafish DNA sequence from clone CH211-242L1 in... 40 9.0
38gb|AC006120.1|AC006120 Homo sapiens chromosome 17, clone hRPK.34... 40 9.0
39gb|BT001922.1| Arabidopsis thaliana clone C104767 unknown protei... 40 9.0
40emb|AL935060.17| Mouse DNA sequence from clone RP24-151H6 on chr... 40 9.0
41gb|U20168.1|CEU20168 Caenorhabditis elegans Lin-25 protein (lin-... 40 9.0 
>dbj|AK064988.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001D07, full
            insert sequence
          Length = 3566

 Score =  492 bits (248), Expect = e-136
 Identities = 383/428 (89%)
 Strand = Plus / Minus

                                                                        
Query: 233  gcagccggaggaaagtcctcaggaggcatggcaaacggccgcaccatcttctcaaacttg 292
            ||||| ||||| ||||| ||||||||||| ||||| || |||||||| ||||||||||||
Sbjct: 3326 gcagctggagggaagtcttcaggaggcatcgcaaatggtcgcaccattttctcaaacttg 3267

                                                                        
Query: 293  tccagtgtcaggcaagagccaacttcctgcagtctctcggggcccattatcggcagggtg 352
            |||||||| ||||| || |||||||||||||||||||| || ||||||||||||||||||
Sbjct: 3266 tccagtgttaggcaggaaccaacttcctgcagtctctcaggccccattatcggcagggtg 3207

                                                                        
Query: 353  tgctcctggagcaacggagaagtttcactggttttgtcctcgagagggctgagatcagca 412
            |||||||||||||| | || | ||||||||||||| ||||| ||||| || |||||||||
Sbjct: 3206 tgctcctggagcaaggaagtattttcactggttttatcctctagaggactaagatcagca 3147

                                                                        
Query: 413  ccacgactgaatgtcatttcgatccggaacctttcctcatcttctaaaggaacctctgta 472
            |||||||| ||||||||||| ||||||||||||| ||||||||||||||||||||| |||
Sbjct: 3146 ccacgactaaatgtcatttcaatccggaaccttttctcatcttctaaaggaacctcagta 3087

                                                                        
Query: 473  ttttcgaacattctaagcacgatattgctcatataatcaagctccctggttctatgtagt 532
            ||||| |||||||||||||| ||||| ||||| || |||||||||||||||||||| |||
Sbjct: 3086 ttttcaaacattctaagcacaatattactcatgtagtcaagctccctggttctatgcagt 3027

                                                                        
Query: 533  cggtccagagtactttggcagacaaggctatcctctccatgtagagactcatccaagttg 592
            ||||| | ||  ||||||||||||||||||||||| || |||||| | ||||||||||||
Sbjct: 3026 cggtctaaagcgctttggcagacaaggctatcctccccttgtagacattcatccaagttg 2967

                                                                        
Query: 593  caataccgaaggacattcatcaatgagtgtatatgggattccgatgtgaaataaagcctt 652
            ||||| |||||||||||||| || |||||||| || ||||| ||||||||||||||||||
Sbjct: 2966 caatagcgaaggacattcattaaggagtgtatgtgagattctgatgtgaaataaagcctt 2907

                    
Query: 653  gtgcggac 660
            || |||||
Sbjct: 2906 gtccggac 2899



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 35/37 (94%)
 Strand = Plus / Minus

                                                 
Query: 35   gttaccaaaattgcgcaaatggtgtcgccaccagatg 71
            ||||||||||||| ||||||||||| |||||||||||
Sbjct: 3519 gttaccaaaattgggcaaatggtgttgccaccagatg 3483
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>dbj|AK060749.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-F12, full
            insert sequence
          Length = 1817

 Score =  484 bits (244), Expect = e-133
 Identities = 382/428 (89%)
 Strand = Plus / Minus

                                                                        
Query: 233  gcagccggaggaaagtcctcaggaggcatggcaaacggccgcaccatcttctcaaacttg 292
            ||||| ||||| ||||| ||||||||||| ||||| || |||||||| ||||||||||||
Sbjct: 1568 gcagctggagggaagtcttcaggaggcatcgcaaatggtcgcaccattttctcaaacttg 1509

                                                                        
Query: 293  tccagtgtcaggcaagagccaacttcctgcagtctctcggggcccattatcggcagggtg 352
            |||||||| ||||| || |||||||||||||||||||| || ||||||||||||||||||
Sbjct: 1508 tccagtgttaggcaggaaccaacttcctgcagtctctcaggccccattatcggcagggtg 1449

                                                                        
Query: 353  tgctcctggagcaacggagaagtttcactggttttgtcctcgagagggctgagatcagca 412
            |||||||||||||| | || | ||||||||||||| ||||| ||||| || |||||||||
Sbjct: 1448 tgctcctggagcaaggaagtattttcactggttttatcctctagaggactaagatcagca 1389

                                                                        
Query: 413  ccacgactgaatgtcatttcgatccggaacctttcctcatcttctaaaggaacctctgta 472
            |||||||| ||||||||||| ||||||||||||| |||||| |||||||||||||| |||
Sbjct: 1388 ccacgactaaatgtcatttcaatccggaaccttttctcatcctctaaaggaacctcagta 1329

                                                                        
Query: 473  ttttcgaacattctaagcacgatattgctcatataatcaagctccctggttctatgtagt 532
            ||||| |||||||||||||| ||||| ||||| || |||||||||||||||||||| |||
Sbjct: 1328 ttttcaaacattctaagcacaatattactcatgtagtcaagctccctggttctatgcagt 1269

                                                                        
Query: 533  cggtccagagtactttggcagacaaggctatcctctccatgtagagactcatccaagttg 592
            ||||| | ||  ||||||||||||||||||||||| || |||||| | ||||||||||||
Sbjct: 1268 cggtctaaagcgctttggcagacaaggctatcctccccttgtagacattcatccaagttg 1209

                                                                        
Query: 593  caataccgaaggacattcatcaatgagtgtatatgggattccgatgtgaaataaagcctt 652
            ||||| |||||||||||||| || |||||||| || ||||| ||||||||||||||||||
Sbjct: 1208 caatagcgaaggacattcattaaggagtgtatgtgagattctgatgtgaaataaagcctt 1149

                    
Query: 653  gtgcggac 660
            || |||||
Sbjct: 1148 gtccggac 1141



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 35/37 (94%)
 Strand = Plus / Minus

                                                 
Query: 35   gttaccaaaattgcgcaaatggtgtcgccaccagatg 71
            ||||||||||||| ||||||||||| |||||||||||
Sbjct: 1761 gttaccaaaattgggcaaatggtgttgccaccagatg 1725
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>gb|AC097277.6| Oryza sativa chromosome 3 BAC OSJNBa0022C08 genomic sequence, complete
             sequence
          Length = 150155

 Score =  182 bits (92), Expect = 1e-42
 Identities = 143/160 (89%)
 Strand = Plus / Plus

                                                                         
Query: 233   gcagccggaggaaagtcctcaggaggcatggcaaacggccgcaccatcttctcaaacttg 292
             ||||| ||||| ||||| ||||||||||| ||||| || |||||||| ||||||||||||
Sbjct: 92149 gcagctggagggaagtcttcaggaggcatcgcaaatggtcgcaccattttctcaaacttg 92208

                                                                         
Query: 293   tccagtgtcaggcaagagccaacttcctgcagtctctcggggcccattatcggcagggtg 352
             |||||||| ||||| || |||||||||||||||||||| || ||||||||||||||||||
Sbjct: 92209 tccagtgttaggcaggaaccaacttcctgcagtctctcaggccccattatcggcagggtg 92268

                                                     
Query: 353   tgctcctggagcaacggagaagtttcactggttttgtcct 392
             |||||||||||||| | || | ||||||||||||| ||||
Sbjct: 92269 tgctcctggagcaaggaagtattttcactggttttatcct 92308



 Score =  180 bits (91), Expect = 4e-42
 Identities = 151/171 (88%)
 Strand = Plus / Plus

                                                                         
Query: 464   acctctgtattttcgaacattctaagcacgatattgctcatataatcaagctccctggtt 523
             ||||| |||||||| |||||||||||||| ||||| ||||| || |||||||||||||||
Sbjct: 92806 acctcagtattttcaaacattctaagcacaatattactcatgtagtcaagctccctggtt 92865

                                                                         
Query: 524   ctatgtagtcggtccagagtactttggcagacaaggctatcctctccatgtagagactca 583
             ||||| |||||||| | ||  ||||||||||||||||||||||| || |||||| | |||
Sbjct: 92866 ctatgcagtcggtctaaagcgctttggcagacaaggctatcctccccttgtagacattca 92925

                                                                
Query: 584   tccaagttgcaataccgaaggacattcatcaatgagtgtatatgggattcc 634
             |||||||||||||| |||||||||||||| || |||||||| || ||||||
Sbjct: 92926 tccaagttgcaatagcgaaggacattcattaaggagtgtatgtgagattcc 92976



 Score =  107 bits (54), Expect = 5e-20
 Identities = 72/78 (92%)
 Strand = Plus / Plus

                                                                         
Query: 390   cctcgagagggctgagatcagcaccacgactgaatgtcatttcgatccggaacctttcct 449
             |||| ||||| || ||||||||||||||||| ||||||||||| ||||||||||||| ||
Sbjct: 92419 cctctagaggactaagatcagcaccacgactaaatgtcatttcaatccggaaccttttct 92478

                               
Query: 450   catcttctaaaggaacct 467
             ||||||||||||||||||
Sbjct: 92479 catcttctaaaggaacct 92496



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 35/37 (94%)
 Strand = Plus / Plus

                                                  
Query: 35    gttaccaaaattgcgcaaatggtgtcgccaccagatg 71
             ||||||||||||| ||||||||||| |||||||||||
Sbjct: 91956 gttaccaaaattgggcaaatggtgttgccaccagatg 91992



 Score = 44.1 bits (22), Expect = 0.58
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 635   gatgtgaaataaagccttgtgcggac 660
             |||||||||||||||||||| |||||
Sbjct: 93064 gatgtgaaataaagccttgtccggac 93089
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  182 bits (92), Expect = 1e-42
 Identities = 143/160 (89%)
 Strand = Plus / Minus

                                                                            
Query: 233      gcagccggaggaaagtcctcaggaggcatggcaaacggccgcaccatcttctcaaacttg 292
                ||||| ||||| ||||| ||||||||||| ||||| || |||||||| ||||||||||||
Sbjct: 27212246 gcagctggagggaagtcttcaggaggcatcgcaaatggtcgcaccattttctcaaacttg 27212187

                                                                            
Query: 293      tccagtgtcaggcaagagccaacttcctgcagtctctcggggcccattatcggcagggtg 352
                |||||||| ||||| || |||||||||||||||||||| || ||||||||||||||||||
Sbjct: 27212186 tccagtgttaggcaggaaccaacttcctgcagtctctcaggccccattatcggcagggtg 27212127

                                                        
Query: 353      tgctcctggagcaacggagaagtttcactggttttgtcct 392
                |||||||||||||| | || | ||||||||||||| ||||
Sbjct: 27212126 tgctcctggagcaaggaagtattttcactggttttatcct 27212087



 Score =  180 bits (91), Expect = 4e-42
 Identities = 151/171 (88%)
 Strand = Plus / Minus

                                                                            
Query: 464      acctctgtattttcgaacattctaagcacgatattgctcatataatcaagctccctggtt 523
                ||||| |||||||| |||||||||||||| ||||| ||||| || |||||||||||||||
Sbjct: 27211589 acctcagtattttcaaacattctaagcacaatattactcatgtagtcaagctccctggtt 27211530

                                                                            
Query: 524      ctatgtagtcggtccagagtactttggcagacaaggctatcctctccatgtagagactca 583
                ||||| |||||||| | ||  ||||||||||||||||||||||| || |||||| | |||
Sbjct: 27211529 ctatgcagtcggtctaaagcgctttggcagacaaggctatcctccccttgtagacattca 27211470

                                                                   
Query: 584      tccaagttgcaataccgaaggacattcatcaatgagtgtatatgggattcc 634
                |||||||||||||| |||||||||||||| || |||||||| || ||||||
Sbjct: 27211469 tccaagttgcaatagcgaaggacattcattaaggagtgtatgtgagattcc 27211419



 Score =  107 bits (54), Expect = 5e-20
 Identities = 72/78 (92%)
 Strand = Plus / Minus

                                                                            
Query: 390      cctcgagagggctgagatcagcaccacgactgaatgtcatttcgatccggaacctttcct 449
                |||| ||||| || ||||||||||||||||| ||||||||||| ||||||||||||| ||
Sbjct: 27211976 cctctagaggactaagatcagcaccacgactaaatgtcatttcaatccggaaccttttct 27211917

                                  
Query: 450      catcttctaaaggaacct 467
                ||||||||||||||||||
Sbjct: 27211916 catcttctaaaggaacct 27211899



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 35/37 (94%)
 Strand = Plus / Minus

                                                     
Query: 35       gttaccaaaattgcgcaaatggtgtcgccaccagatg 71
                ||||||||||||| ||||||||||| |||||||||||
Sbjct: 27212439 gttaccaaaattgggcaaatggtgttgccaccagatg 27212403



 Score = 44.1 bits (22), Expect = 0.58
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                          
Query: 635      gatgtgaaataaagccttgtgcggac 660
                |||||||||||||||||||| |||||
Sbjct: 27211331 gatgtgaaataaagccttgtccggac 27211306
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  182 bits (92), Expect = 1e-42
 Identities = 143/160 (89%)
 Strand = Plus / Minus

                                                                            
Query: 233      gcagccggaggaaagtcctcaggaggcatggcaaacggccgcaccatcttctcaaacttg 292
                ||||| ||||| ||||| ||||||||||| ||||| || |||||||| ||||||||||||
Sbjct: 27303569 gcagctggagggaagtcttcaggaggcatcgcaaatggtcgcaccattttctcaaacttg 27303510

                                                                            
Query: 293      tccagtgtcaggcaagagccaacttcctgcagtctctcggggcccattatcggcagggtg 352
                |||||||| ||||| || |||||||||||||||||||| || ||||||||||||||||||
Sbjct: 27303509 tccagtgttaggcaggaaccaacttcctgcagtctctcaggccccattatcggcagggtg 27303450

                                                        
Query: 353      tgctcctggagcaacggagaagtttcactggttttgtcct 392
                |||||||||||||| | || | ||||||||||||| ||||
Sbjct: 27303449 tgctcctggagcaaggaagtattttcactggttttatcct 27303410



 Score =  180 bits (91), Expect = 4e-42
 Identities = 151/171 (88%)
 Strand = Plus / Minus

                                                                            
Query: 464      acctctgtattttcgaacattctaagcacgatattgctcatataatcaagctccctggtt 523
                ||||| |||||||| |||||||||||||| ||||| ||||| || |||||||||||||||
Sbjct: 27302912 acctcagtattttcaaacattctaagcacaatattactcatgtagtcaagctccctggtt 27302853

                                                                            
Query: 524      ctatgtagtcggtccagagtactttggcagacaaggctatcctctccatgtagagactca 583
                ||||| |||||||| | ||  ||||||||||||||||||||||| || |||||| | |||
Sbjct: 27302852 ctatgcagtcggtctaaagcgctttggcagacaaggctatcctccccttgtagacattca 27302793

                                                                   
Query: 584      tccaagttgcaataccgaaggacattcatcaatgagtgtatatgggattcc 634
                |||||||||||||| |||||||||||||| || |||||||| || ||||||
Sbjct: 27302792 tccaagttgcaatagcgaaggacattcattaaggagtgtatgtgagattcc 27302742



 Score =  107 bits (54), Expect = 5e-20
 Identities = 72/78 (92%)
 Strand = Plus / Minus

                                                                            
Query: 390      cctcgagagggctgagatcagcaccacgactgaatgtcatttcgatccggaacctttcct 449
                |||| ||||| || ||||||||||||||||| ||||||||||| ||||||||||||| ||
Sbjct: 27303299 cctctagaggactaagatcagcaccacgactaaatgtcatttcaatccggaaccttttct 27303240

                                  
Query: 450      catcttctaaaggaacct 467
                ||||||||||||||||||
Sbjct: 27303239 catcttctaaaggaacct 27303222



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 35/37 (94%)
 Strand = Plus / Minus

                                                     
Query: 35       gttaccaaaattgcgcaaatggtgtcgccaccagatg 71
                ||||||||||||| ||||||||||| |||||||||||
Sbjct: 27303762 gttaccaaaattgggcaaatggtgttgccaccagatg 27303726



 Score = 44.1 bits (22), Expect = 0.58
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                          
Query: 635      gatgtgaaataaagccttgtgcggac 660
                |||||||||||||||||||| |||||
Sbjct: 27302654 gatgtgaaataaagccttgtccggac 27302629
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>ref|NM_191480.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 3273

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 61/74 (82%)
 Strand = Plus / Minus

                                                                        
Query: 410  gcaccacgactgaatgtcatttcgatccggaacctttcctcatcttctaaaggaacctct 469
            |||||||||||  |||||||||| || || |||||||     ||||| |||| |||||||
Sbjct: 2945 gcaccacgactatatgtcatttctatgcgaaacctttttgggtcttccaaagaaacctct 2886

                          
Query: 470  gtattttcgaacat 483
            ||||| ||||||||
Sbjct: 2885 gtattctcgaacat 2872
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>ref|NM_191478.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1020

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 61/74 (82%)
 Strand = Plus / Minus

                                                                       
Query: 410 gcaccacgactgaatgtcatttcgatccggaacctttcctcatcttctaaaggaacctct 469
           |||||||||||  |||||||||| || || |||||||     ||||| |||| |||||||
Sbjct: 716 gcaccacgactatatgtcatttctatgcgaaacctttttgggtcttccaaagaaacctct 657

                         
Query: 470 gtattttcgaacat 483
           ||||| ||||||||
Sbjct: 656 gtattctcgaacat 643
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>emb|BX000359.7| Mouse DNA sequence from clone RP23-343C18 on chromosome 11 Contains the
             gene for a novel helix-loop-helix DNA-binding domain
             containing protein, a novel gene, the Gosr1 gene for golgi
             SNAP receptor complex member 1 and a CpG island, complete
             sequence
          Length = 118586

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                               
Query: 443   ctttcctcatcttctaaaggaacctctgtatttt 476
             |||||||||||||| |||| ||||| ||||||||
Sbjct: 28965 ctttcctcatcttcaaaagaaacctgtgtatttt 28998
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>gb|AC110794.3| Homo sapiens BAC clone RP11-598O12 from 4, complete sequence
          Length = 148841

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 86    tgaatattcacatgaactcatt 107
             ||||||||||||||||||||||
Sbjct: 97295 tgaatattcacatgaactcatt 97274
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>gb|AC129593.4| Mus musculus BAC clone RP24-142E6 from chromosome 7, complete sequence
          Length = 210291

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 500    ctcatataatcaagctccctg 520
              |||||||||||||||||||||
Sbjct: 170322 ctcatataatcaagctccctg 170302
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>gb|AC099589.12| Mus musculus chromosome 1, clone RP23-337A19, complete sequence
          Length = 264062

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 548   tggcagacaaggctatcctct 568
             |||||||||||||||||||||
Sbjct: 17415 tggcagacaaggctatcctct 17395
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>gb|AC104100.6| Mus musculus BAC clone RP24-374D12 from chromosome 7, complete sequence
          Length = 139125

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 500   ctcatataatcaagctccctg 520
             |||||||||||||||||||||
Sbjct: 39576 ctcatataatcaagctccctg 39556
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>gb|AE016819.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome VI,
              complete sequence
          Length = 1813164

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 545    ctttggcagacaaggctatcc 565
              |||||||||||||||||||||
Sbjct: 600182 ctttggcagacaaggctatcc 600202
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>ref|NM_210994.1| Eremothecium gossypii AFR093Wp (AFR093W), mRNA
          Length = 3396

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 545 ctttggcagacaaggctatcc 565
           |||||||||||||||||||||
Sbjct: 482 ctttggcagacaaggctatcc 502
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>emb|BX537323.9| Zebrafish DNA sequence from clone DKEYP-122E2 in linkage group 18,
             complete sequence
          Length = 77788

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 119   acagctttttcagccattttg 139
             |||||||||||||||||||||
Sbjct: 49707 acagctttttcagccattttg 49687
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>gb|AC133651.4| Mus musculus BAC clone RP24-239C15 from 1, complete sequence
          Length = 178756

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 548   tggcagacaaggctatcctct 568
             |||||||||||||||||||||
Sbjct: 78835 tggcagacaaggctatcctct 78855
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>gb|AC161878.3| Mus musculus BAC clone RP23-303B4 from chromosome 1, complete sequence
          Length = 169556

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 548    tggcagacaaggctatcctct 568
              |||||||||||||||||||||
Sbjct: 164576 tggcagacaaggctatcctct 164556
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>gb|AC151524.2| Medicago truncatula chromosome 7 BAC clone mth2-67a20, complete
             sequence
          Length = 99692

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 47/56 (83%)
 Strand = Plus / Plus

                                                                     
Query: 406   atcagcaccacgactgaatgtcatttcgatccggaacctttcctcatcttctaaag 461
             |||||| ||||||||||| ||||  || || |||||||||| |  |||||||||||
Sbjct: 46655 atcagccccacgactgaaggtcagctcaatgcggaaccttttcggatcttctaaag 46710
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>gb|AC170260.2| Mus musculus BAC clone RP24-347N1 from chromosome 5, complete sequence
          Length = 165011

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 76     caaagaggaatgaatattca 95
              ||||||||||||||||||||
Sbjct: 164029 caaagaggaatgaatattca 164010
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>gb|AC114629.12| Mus musculus chromosome 1, clone RP24-111F20, complete sequence
          Length = 178437

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 161   aaaggccagaaactagccag 180
             ||||||||||||||||||||
Sbjct: 55114 aaaggccagaaactagccag 55095
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>gb|AY369378.1| Feline immunodeficiency virus isolate CaONC01 gag protein (gag)
           gene, partial cds
          Length = 1049

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 116 ttcacagctttttcagccattttg 139
           ||||||||||||||||||| ||||
Sbjct: 834 ttcacagctttttcagccaatttg 857
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>gb|AF077542.1| Caenorhabditis elegans cosmid Y57G7A, complete sequence
          Length = 44315

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 468   ctgtattttcgaacattcta 487
             ||||||||||||||||||||
Sbjct: 10489 ctgtattttcgaacattcta 10508
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>emb|Z74473.1|CEF56H9 Caenorhabditis elegans Cosmid F56H9, complete sequence
          Length = 28291

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 275   accatcttctcaaacttgtc 294
             ||||||||||||||||||||
Sbjct: 26011 accatcttctcaaacttgtc 26030
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>gb|AC123054.2| Mus musculus BAC clone RP24-220N11 from 5, complete sequence
          Length = 174874

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 76    caaagaggaatgaatattca 95
             ||||||||||||||||||||
Sbjct: 62234 caaagaggaatgaatattca 62253
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>gb|AC112491.4| Homo sapiens 3 BAC RP11-3P17 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 154758

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 541    agtactttggcagacaaggc 560
              ||||||||||||||||||||
Sbjct: 105606 agtactttggcagacaaggc 105625
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>emb|BX927150.1| Corynebacterium glutamicum ATCC 13032, IS fingerprint type 4-5, complete
              genome; segment 3/10
          Length = 348475

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 261    tggcaaacggccgcaccatc 280
              ||||||||||||||||||||
Sbjct: 192493 tggcaaacggccgcaccatc 192512
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>emb|BX470127.2| Mouse DNA sequence from clone RP24-280A6 on chromosome 4, complete
              sequence
          Length = 142803

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 51     aaatggtgtcgccaccagatgtta 74
              ||||||||| ||||||||||||||
Sbjct: 118829 aaatggtgtagccaccagatgtta 118806
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>gb|AC087302.7| Homo sapiens chromosome 17, clone RP11-761L11, complete sequence
          Length = 129564

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 119   acagctttttcagccatttt 138
             ||||||||||||||||||||
Sbjct: 96068 acagctttttcagccatttt 96049
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>gb|AC104639.3| Homo sapiens 3q BAC RP11-672L16 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 187942

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 602    aggacattcatcaatgagtg 621
              ||||||||||||||||||||
Sbjct: 133545 aggacattcatcaatgagtg 133526
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>gb|AC098680.3| Homo sapiens BAC clone RP11-600L4 from 4, complete sequence
          Length = 180918

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 596   taccgaaggacattcatcaa 615
             ||||||||||||||||||||
Sbjct: 53659 taccgaaggacattcatcaa 53640
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>gb|AC026473.7| Homo sapiens chromosome 16 clone RP11-51O6, complete sequence
          Length = 170393

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 602   aggacattcatcaatgagtg 621
             ||||||||||||||||||||
Sbjct: 38435 aggacattcatcaatgagtg 38454
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>ref|NM_073761.3| Caenorhabditis elegans abnormal cell LINeage family member (lin-25)
           (lin-25) mRNA, complete cds
          Length = 3527

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 275 accatcttctcaaacttgtc 294
           ||||||||||||||||||||
Sbjct: 235 accatcttctcaaacttgtc 254
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>gb|AC009169.9| Homo sapiens chromosome 16 clone RP11-90K18, complete sequence
          Length = 146399

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 602   aggacattcatcaatgagtg 621
             ||||||||||||||||||||
Sbjct: 75840 aggacattcatcaatgagtg 75859
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>dbj|BA000036.3| Corynebacterium glutamicum ATCC 13032 DNA, complete genome
          Length = 3309401

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 261    tggcaaacggccgcaccatc 280
              ||||||||||||||||||||
Sbjct: 888880 tggcaaacggccgcaccatc 888899
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>gb|AC079776.5| Homo sapiens BAC clone RP11-315H12 from 2, complete sequence
          Length = 198961

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 18    ctgaaagatgaacccatgtt 37
             ||||||||||||||||||||
Sbjct: 51493 ctgaaagatgaacccatgtt 51474
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>emb|BX927258.8| Zebrafish DNA sequence from clone CH211-279M15 in linkage group 20,
              complete sequence
          Length = 146407

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 370    agaagtttcactggttttgt 389
              ||||||||||||||||||||
Sbjct: 131358 agaagtttcactggttttgt 131339
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>emb|CR361565.8| Zebrafish DNA sequence from clone CH211-242L1 in linkage group 22,
             complete sequence
          Length = 164475

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 81    aggaatgaatattcacatga 100
             ||||||||||||||||||||
Sbjct: 40322 aggaatgaatattcacatga 40341
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>gb|AC006120.1|AC006120 Homo sapiens chromosome 17, clone hRPK.346_K_10, complete sequence
          Length = 168753

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 119    acagctttttcagccatttt 138
              ||||||||||||||||||||
Sbjct: 141749 acagctttttcagccatttt 141768
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>gb|BT001922.1| Arabidopsis thaliana clone C104767 unknown protein (At5g15070) mRNA,
            complete cds
          Length = 3181

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 83/104 (79%)
 Strand = Plus / Minus

                                                                        
Query: 545  ctttggcagacaaggctatcctctccatgtagagactcatccaagttgcaataccgaagg 604
            ||||||||||| || || || ||||| || ||||| || || |  || |||||||| || 
Sbjct: 2732 ctttggcagaccagactttcttctccttgaagagattcgtcaagattacaataccgtaga 2673

                                                        
Query: 605  acattcatcaatgagtgtatatgggattccgatgtgaaataaag 648
            || |||||||  ||||| ||||| ||||| |||||||| |||||
Sbjct: 2672 acgttcatcagagagtgaatatgtgattcagatgtgaagtaaag 2629
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>emb|AL935060.17| Mouse DNA sequence from clone RP24-151H6 on chromosome 2, complete
              sequence
          Length = 212007

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 548    tggcagacaaggctatcctc 567
              ||||||||||||||||||||
Sbjct: 173749 tggcagacaaggctatcctc 173730
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>gb|U20168.1|CEU20168 Caenorhabditis elegans Lin-25 protein (lin-25) gene, complete cds
          Length = 3569

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 275 accatcttctcaaacttgtc 294
           ||||||||||||||||||||
Sbjct: 257 accatcttctcaaacttgtc 276


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,395,543
Number of Sequences: 3902068
Number of extensions: 5395543
Number of successful extensions: 99426
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 99264
Number of HSP's gapped (non-prelim): 160
length of query: 660
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 637
effective length of database: 17,143,297,704
effective search space: 10920280637448
effective search space used: 10920280637448
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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