ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd20d23
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1LHX8_MOUSE (O35652) LIM/homeobox protein Lhx8 (LIM homeodomain L... 33 1.4
2VCLA_GOSHI (P09799) Vicilin GC72-A precursor (Alpha-globulin A) 32 2.3
3MST2_DROHY (Q08696) Axoneme-associated protein mst101(2) 32 3.1
4ADA19_HUMAN (Q9H013) ADAM 19 precursor (EC 3.4.24.-) (A disinteg... 30 6.8

>LHX8_MOUSE (O35652) LIM/homeobox protein Lhx8 (LIM homeodomain Lhx7) (L3)|
          Length = 367

 Score = 32.7 bits (73), Expect = 1.4
 Identities = 17/59 (28%), Positives = 27/59 (45%)
 Frame = +1

Query: 115 SSCGKHT*QTNLLKEGKGTEFHGALF*ERHRQSCCYCKLLVFYSHAFAVIASKTYTRAY 291
           S CG+H   T+ ++  KG  +H A F      +C  CK  +     FA++  K   R +
Sbjct: 158 SRCGRHIHSTDWVRRAKGNVYHLACF------ACFSCKRQLSTGEEFALVEEKVLCRVH 210



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>VCLA_GOSHI (P09799) Vicilin GC72-A precursor (Alpha-globulin A)|
          Length = 605

 Score = 32.0 bits (71), Expect = 2.3
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = -3

Query: 636 CDHKCQ-HHKVPAXKKQCVDECHRRKHHHPSRAACERKCSHWRDPTRKE 493
           C  +CQ   + P  K+QCV EC  +    P +   E K   WR+   +E
Sbjct: 125 CQQRCQWQEQRPERKQQCVKECREQYQEDPWKGERENK---WREEEEEE 170



 Score = 31.2 bits (69), Expect = 4.0
 Identities = 16/66 (24%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
 Frame = -3

Query: 651 RATTSCDHKCQHHKV---PAXKKQCVDECHRRKHHHPSRA--ACERKCSHWRD--PTRKE 493
           R    C   CQ  +    P  ++ C ++  +++   P +    C+++C  W++  P RK+
Sbjct: 82  RRYQDCRQHCQQEERRLRPHCEQSCREQYEKQQQQQPDKQFKECQQRCQ-WQEQRPERKQ 140

Query: 492 RCVQTC 475
           +CV+ C
Sbjct: 141 QCVKEC 146



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>MST2_DROHY (Q08696) Axoneme-associated protein mst101(2)|
          Length = 1391

 Score = 31.6 bits (70), Expect = 3.1
 Identities = 14/56 (25%), Positives = 25/56 (44%)
 Frame = -3

Query: 636  CDHKCQHHKVPAXKKQCVDECHRRKHHHPSRAACERKCSHWRDPTRKERCVQTCMR 469
            C+ + +  K  A KKQC +   + K     +  CE +    ++   K+RC +   R
Sbjct: 1080 CEERAKKEKEAAEKKQCEERAKKLKEA-AEKKQCEERAKKEKEAAEKKRCEEAAKR 1134



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>ADA19_HUMAN (Q9H013) ADAM 19 precursor (EC 3.4.24.-) (A disintegrin and|
           metalloproteinase domain 19) (Meltrin beta)
           (Metalloprotease and disintegrin dentritic antigen
           marker) (MADDAM)
          Length = 956

 Score = 30.4 bits (67), Expect = 6.8
 Identities = 18/52 (34%), Positives = 29/52 (55%)
 Frame = +2

Query: 158 KEKEQSSMELSSRRGIANHAATASYWSFILTPLPS*LARRIRGRIYRSVYTR 313
           +E E SS+ LS+ RGI      +S  S+++ PLP    + +   IYRS + +
Sbjct: 121 RETELSSVTLSTCRGIRGLITVSSNLSYVIEPLPDSKGQHL---IYRSEHLK 169


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,596,685
Number of Sequences: 219361
Number of extensions: 1384879
Number of successful extensions: 3313
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3304
length of database: 80,573,946
effective HSP length: 110
effective length of database: 56,444,236
effective search space used: 8805300816
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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