ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd20d22
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CYB_DICDI (Q37311) Cytochrome b 38 0.025
2STIM2_HUMAN (Q9P246) Stromal interaction molecule 2 precursor 33 0.62
3YB65_SCHPO (Q09746) Hypothetical protein C12C2.05c in chromosome II 32 1.1
4TM16C_HUMAN (Q9BYT9) Transmembrane protein 16C 30 4.0
5CYB_ALLMA (Q37395) Cytochrome b 30 6.9
6ISPG_CLOAB (Q97I56) 4-hydroxy-3-methylbut-2-en-1-yl diphosphate ... 29 9.0

>CYB_DICDI (Q37311) Cytochrome b|
          Length = 389

 Score = 37.7 bits (86), Expect = 0.025
 Identities = 18/54 (33%), Positives = 31/54 (57%)
 Frame = +1

Query: 268 FFWVLQIIH*VSAVYFCSFD*IQTQEENVVLWPSGAIVWILIYYGGKLTVYLGW 429
           FF+++  IH +  +YF S+     Q+ N +LW SG ++++L+   G L   L W
Sbjct: 88  FFFIVVYIHMLRGLYFGSY-----QKPNAMLWVSGVVIFLLLIITGFLGYVLPW 136



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>STIM2_HUMAN (Q9P246) Stromal interaction molecule 2 precursor|
          Length = 746

 Score = 33.1 bits (74), Expect = 0.62
 Identities = 31/99 (31%), Positives = 45/99 (45%), Gaps = 8/99 (8%)
 Frame = -3

Query: 548 LCRHQTLACTEAS--PDSPSTSC*RHTLSPHRGVGSSLNHPVHPRYTV-SLPP**IKIQT 378
           L R  +L  +  S  P SP     R  L+PH    S   HP HP++T  SLP        
Sbjct: 506 LARSSSLCRSRRSIVPSSPQPQ--RAQLAPHAPHPSHPRHPHHPQHTPHSLP-------- 555

Query: 377 MAPEGHNTTFSSCV*I*SNEQK-----YTAETQWMI*ST 276
            +P+    + SSC  +  NE++     ++AE QW +  T
Sbjct: 556 -SPDPDILSVSSCPALYRNEEEEEAIYFSAEKQWEVPDT 593



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>YB65_SCHPO (Q09746) Hypothetical protein C12C2.05c in chromosome II|
          Length = 642

 Score = 32.3 bits (72), Expect = 1.1
 Identities = 31/115 (26%), Positives = 50/115 (43%), Gaps = 21/115 (18%)
 Frame = -2

Query: 474 AESTSWCRLISEPSSPSQVHCKFASIINQDPNYGARGPQHYIFFLR-------------- 337
           A  T+W +++ E +  S+ H K +   + D     +  + +I  LR              
Sbjct: 85  ASLTTWSKILDELTRSSKTHQKLSDDYSLDIAEKLKKLESHIEALRKVYDDLYKKFSSEK 144

Query: 336 ---LNLIKRAKIYC*DSMDDLKHPKEVEDRSR----AGNKKLRLSLMLCVINKNL 193
              LN +KRAK+   ++ DDL+  ++  D+ R      N KL  S ML   NK L
Sbjct: 145 ETLLNSVKRAKVSYHEACDDLESARQKNDKYREQKTQRNLKLSESDMLDKKNKYL 199



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>TM16C_HUMAN (Q9BYT9) Transmembrane protein 16C|
          Length = 981

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +1

Query: 385 ILIYYGGKLTVYLGWTGWFRDEPTPRCGLSVCL 483
           I +Y+G K+ +Y  W GW+     P   + +C+
Sbjct: 384 IRLYFGEKIGLYFAWLGWYTGMLIPAAIVGLCV 416



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>CYB_ALLMA (Q37395) Cytochrome b|
          Length = 382

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 16/54 (29%), Positives = 26/54 (48%)
 Frame = +1

Query: 268 FFWVLQIIH*VSAVYFCSFD*IQTQEENVVLWPSGAIVWILIYYGGKLTVYLGW 429
           FF++   IH    +YF S+      +  V+LW  G +++IL+     L   L W
Sbjct: 88  FFFICVYIHMARGLYFNSYT-----KPRVLLWSVGVVIYILMMATAFLGYVLPW 136



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>ISPG_CLOAB (Q97I56) 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC|
           1.17.4.3) (1-hydroxy-2-methyl-2-(E)-butenyl
           4-diphosphate synthase)
          Length = 349

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = -2

Query: 297 SMDDLKHPKEVEDRSRAGNKKLRLSLMLCVIN 202
           S+D +K   EVE R    NK +++++M CV+N
Sbjct: 271 SIDLIKIANEVEKRLEKTNKSIKVAVMGCVVN 302


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,030,131
Number of Sequences: 219361
Number of extensions: 1654934
Number of successful extensions: 3662
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3659
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 5216272880
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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