Clone Name | rbasd20d22 |
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Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | CYB_DICDI (Q37311) Cytochrome b | 38 | 0.025 | 2 | STIM2_HUMAN (Q9P246) Stromal interaction molecule 2 precursor | 33 | 0.62 | 3 | YB65_SCHPO (Q09746) Hypothetical protein C12C2.05c in chromosome II | 32 | 1.1 | 4 | TM16C_HUMAN (Q9BYT9) Transmembrane protein 16C | 30 | 4.0 | 5 | CYB_ALLMA (Q37395) Cytochrome b | 30 | 6.9 | 6 | ISPG_CLOAB (Q97I56) 4-hydroxy-3-methylbut-2-en-1-yl diphosphate ... | 29 | 9.0 |
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>CYB_DICDI (Q37311) Cytochrome b| Length = 389 Score = 37.7 bits (86), Expect = 0.025 Identities = 18/54 (33%), Positives = 31/54 (57%) Frame = +1 Query: 268 FFWVLQIIH*VSAVYFCSFD*IQTQEENVVLWPSGAIVWILIYYGGKLTVYLGW 429 FF+++ IH + +YF S+ Q+ N +LW SG ++++L+ G L L W Sbjct: 88 FFFIVVYIHMLRGLYFGSY-----QKPNAMLWVSGVVIFLLLIITGFLGYVLPW 136
>STIM2_HUMAN (Q9P246) Stromal interaction molecule 2 precursor| Length = 746 Score = 33.1 bits (74), Expect = 0.62 Identities = 31/99 (31%), Positives = 45/99 (45%), Gaps = 8/99 (8%) Frame = -3 Query: 548 LCRHQTLACTEAS--PDSPSTSC*RHTLSPHRGVGSSLNHPVHPRYTV-SLPP**IKIQT 378 L R +L + S P SP R L+PH S HP HP++T SLP Sbjct: 506 LARSSSLCRSRRSIVPSSPQPQ--RAQLAPHAPHPSHPRHPHHPQHTPHSLP-------- 555 Query: 377 MAPEGHNTTFSSCV*I*SNEQK-----YTAETQWMI*ST 276 +P+ + SSC + NE++ ++AE QW + T Sbjct: 556 -SPDPDILSVSSCPALYRNEEEEEAIYFSAEKQWEVPDT 593
>YB65_SCHPO (Q09746) Hypothetical protein C12C2.05c in chromosome II| Length = 642 Score = 32.3 bits (72), Expect = 1.1 Identities = 31/115 (26%), Positives = 50/115 (43%), Gaps = 21/115 (18%) Frame = -2 Query: 474 AESTSWCRLISEPSSPSQVHCKFASIINQDPNYGARGPQHYIFFLR-------------- 337 A T+W +++ E + S+ H K + + D + + +I LR Sbjct: 85 ASLTTWSKILDELTRSSKTHQKLSDDYSLDIAEKLKKLESHIEALRKVYDDLYKKFSSEK 144 Query: 336 ---LNLIKRAKIYC*DSMDDLKHPKEVEDRSR----AGNKKLRLSLMLCVINKNL 193 LN +KRAK+ ++ DDL+ ++ D+ R N KL S ML NK L Sbjct: 145 ETLLNSVKRAKVSYHEACDDLESARQKNDKYREQKTQRNLKLSESDMLDKKNKYL 199
>TM16C_HUMAN (Q9BYT9) Transmembrane protein 16C| Length = 981 Score = 30.4 bits (67), Expect = 4.0 Identities = 10/33 (30%), Positives = 18/33 (54%) Frame = +1 Query: 385 ILIYYGGKLTVYLGWTGWFRDEPTPRCGLSVCL 483 I +Y+G K+ +Y W GW+ P + +C+ Sbjct: 384 IRLYFGEKIGLYFAWLGWYTGMLIPAAIVGLCV 416
>CYB_ALLMA (Q37395) Cytochrome b| Length = 382 Score = 29.6 bits (65), Expect = 6.9 Identities = 16/54 (29%), Positives = 26/54 (48%) Frame = +1 Query: 268 FFWVLQIIH*VSAVYFCSFD*IQTQEENVVLWPSGAIVWILIYYGGKLTVYLGW 429 FF++ IH +YF S+ + V+LW G +++IL+ L L W Sbjct: 88 FFFICVYIHMARGLYFNSYT-----KPRVLLWSVGVVIYILMMATAFLGYVLPW 136
>ISPG_CLOAB (Q97I56) 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC| 1.17.4.3) (1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase) Length = 349 Score = 29.3 bits (64), Expect = 9.0 Identities = 13/32 (40%), Positives = 21/32 (65%) Frame = -2 Query: 297 SMDDLKHPKEVEDRSRAGNKKLRLSLMLCVIN 202 S+D +K EVE R NK +++++M CV+N Sbjct: 271 SIDLIKIANEVEKRLEKTNKSIKVAVMGCVVN 302 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 83,030,131 Number of Sequences: 219361 Number of extensions: 1654934 Number of successful extensions: 3662 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 3535 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3659 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 5216272880 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)