Clone Name | rbasd20d22 |
---|---|
Clone Library Name | barley_pub |
>emb|BX088573.4| Mouse DNA sequence from clone RP23-78N10 on chromosome 4 Contains the 3' end of the Dbccr1 gene for deleted in bladder cancer chromosome region candidate 1 (human), complete sequence Length = 203865 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Plus Query: 256 cctgtcctctacttcttttgggt 278 ||||||||||||||||||||||| Sbjct: 175132 cctgtcctctacttcttttgggt 175154
>emb|X13595.1|PVGRP10 Bean DNA for glycine-rich cell wall protein GRP 1.0 Length = 1812 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Minus Query: 57 ttcctctacacataaagatttaa 79 ||||||||||||||||||||||| Sbjct: 1807 ttcctctacacataaagatttaa 1785
>gb|AC170422.1| Rhesus Macaque BAC CH250-106F22 (Children's Hospital Oakland Research Institute Rhesus macaque Adult Male BAC Library) complete sequence Length = 185455 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 5 tatatgtttatttagtagcac 25 ||||||||||||||||||||| Sbjct: 79214 tatatgtttatttagtagcac 79234
>gb|AC100893.13| Mus musculus chromosome 8, clone RP23-68I8, complete sequence Length = 253420 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 343 gaagaaaatgtagtgttgtgg 363 ||||||||||||||||||||| Sbjct: 124945 gaagaaaatgtagtgttgtgg 124925
>gb|AC098890.3| Mus musculus BAC clone RP23-122P22 from X, complete sequence Length = 202740 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 545 aaagaaagcagaaccgtgtac 565 ||||||||||||||||||||| Sbjct: 61406 aaagaaagcagaaccgtgtac 61386
>gb|AC126010.13| Medicago truncatula clone mth2-20e4, complete sequence Length = 113964 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 96 aacaaaatagttctacaagtg 116 ||||||||||||||||||||| Sbjct: 74474 aacaaaatagttctacaagtg 74494
>emb|AJ418370.1|MTR418370 Medicago truncatula nork gene for nodulation receptor kinase, exons 1-15, Allele: wild type; NN1 Length = 8569 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 96 aacaaaatagttctacaagtg 116 ||||||||||||||||||||| Sbjct: 8296 aacaaaatagttctacaagtg 8276
>emb|AJ418369.1|MTR418369 Medicago truncatula mRNA for nodulation receptor kinase (nork gene), wild type allele Length = 3568 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 96 aacaaaatagttctacaagtg 116 ||||||||||||||||||||| Sbjct: 3540 aacaaaatagttctacaagtg 3520
>emb|BX276185.11| Zebrafish DNA sequence from clone CH211-276M23, complete sequence Length = 157119 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 193 caagtttttattgatcacaca 213 ||||||||||||||||||||| Sbjct: 132761 caagtttttattgatcacaca 132781
>emb|AL669958.14| Mouse DNA sequence from clone RP23-213K6 on chromosome X, complete sequence Length = 195411 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 545 aaagaaagcagaaccgtgtac 565 ||||||||||||||||||||| Sbjct: 128332 aaagaaagcagaaccgtgtac 128312
>ref|NM_001036055.1| Arabidopsis thaliana unknown protein AT1G32928 mRNA, complete cds Length = 544 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 171 aacaaagattgaatgagaag 190 |||||||||||||||||||| Sbjct: 22 aacaaagattgaatgagaag 3
>gb|AC123609.11| Mus musculus chromosome 3, clone RP23-281B17, complete sequence Length = 223516 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 256 cctgtcctctacttcttttgggtg 279 ||||||||||||| |||||||||| Sbjct: 138512 cctgtcctctactccttttgggtg 138489
>gb|AC022775.16| Mus musculus chromosome 15, clone RP23-71O17, complete sequence Length = 223532 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 375 catagtttggatcttgattt 394 |||||||||||||||||||| Sbjct: 134252 catagtttggatcttgattt 134271
>gb|AC009462.7| Drosophila melanogaster clone BACR27G04, complete sequence Length = 151609 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 182 aatgagaagcacaagtttttattg 205 ||||| |||||||||||||||||| Sbjct: 18927 aatgaaaagcacaagtttttattg 18950
>gb|AC106017.11| Homo sapiens chromosome 17, clone RP11-744A16, complete sequence Length = 178625 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 233 agcttcttgttccctgctct 252 |||||||||||||||||||| Sbjct: 19953 agcttcttgttccctgctct 19972
>gb|AC020688.7| Homo sapiens chromosome 8, clone RP11-255B23, complete sequence Length = 198958 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 188 aagcacaagtttttattgat 207 |||||||||||||||||||| Sbjct: 55396 aagcacaagtttttattgat 55415
>dbj|AK221776.1| Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL21-70-N07 Length = 550 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 171 aacaaagattgaatgagaag 190 |||||||||||||||||||| Sbjct: 23 aacaaagattgaatgagaag 4
>gb|AC022121.6| Homo sapiens chromosome 5 clone CTD-2007H13, complete sequence Length = 219258 Score = 40.1 bits (20), Expect = 8.1 Identities = 29/32 (90%) Strand = Plus / Plus Query: 261 cctctacttcttttgggtgcttcagatcatcc 292 |||||||||| ||| ||||||||||| ||||| Sbjct: 7382 cctctacttcctttaggtgcttcagagcatcc 7413
>gb|AC008522.6| Homo sapiens chromosome 5 clone CTC-463N11, complete sequence Length = 164462 Score = 40.1 bits (20), Expect = 8.1 Identities = 29/32 (90%) Strand = Plus / Plus Query: 261 cctctacttcttttgggtgcttcagatcatcc 292 |||||||||| ||| ||||||||||| ||||| Sbjct: 136451 cctctacttcctttaggtgcttcagagcatcc 136482
>gb|AC008362.5|AC008362 Drosophila melanogaster, chromosome 3R, region 90D-90E, BAC clone BACR01C15, complete sequence Length = 153048 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 182 aatgagaagcacaagtttttattg 205 ||||| |||||||||||||||||| Sbjct: 142712 aatgaaaagcacaagtttttattg 142735
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 450 gcctacaccacgatgtggac 469 |||||||||||||||||||| Sbjct: 20146930 gcctacaccacgatgtggac 20146949
>gb|AC007952.15| Homo sapiens chromosome 17, clone RP11-160E2, complete sequence Length = 158103 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 233 agcttcttgttccctgctct 252 |||||||||||||||||||| Sbjct: 110311 agcttcttgttccctgctct 110330 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 233 agcttcttgttccctgctct 252 |||||||||||||||||||| Sbjct: 24713 agcttcttgttccctgctct 24694
>gb|AC139083.2| Homo sapiens chromosome 17, clone XXfos-801024C2, complete sequence Length = 39891 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 233 agcttcttgttccctgctct 252 |||||||||||||||||||| Sbjct: 1844 agcttcttgttccctgctct 1863
>gb|AC139315.2| Homo sapiens chromosome 17, clone XXfos-800667B10, complete sequence Length = 39634 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 233 agcttcttgttccctgctct 252 |||||||||||||||||||| Sbjct: 23918 agcttcttgttccctgctct 23899
>gb|AC140106.1| Homo sapiens chromosome 17, clone XXfos-801239H9, complete sequence Length = 40948 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 233 agcttcttgttccctgctct 252 |||||||||||||||||||| Sbjct: 37236 agcttcttgttccctgctct 37255
>dbj|AP005301.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0077M12 Length = 145337 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 450 gcctacaccacgatgtggac 469 |||||||||||||||||||| Sbjct: 12716 gcctacaccacgatgtggac 12735
>dbj|AP004005.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1188_F05 Length = 117045 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 450 gcctacaccacgatgtggac 469 |||||||||||||||||||| Sbjct: 93476 gcctacaccacgatgtggac 93495
>gb|AC006424.5|AC006424 Arabidopsis thaliana chromosome I BAC F9L11 genomic sequence, complete sequence Length = 122836 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 171 aacaaagattgaatgagaag 190 |||||||||||||||||||| Sbjct: 50812 aacaaagattgaatgagaag 50793
>gb|AE003720.3| Drosophila melanogaster chromosome 3R, section 58 of 118 of the complete sequence Length = 228842 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 182 aatgagaagcacaagtttttattg 205 ||||| |||||||||||||||||| Sbjct: 188143 aatgaaaagcacaagtttttattg 188166
>emb|AJ009617.5|HSAJ9617 Homo sapiens chromosome 17 sequence from PAC RP1-149D14 and cosmid 40M01, complete sequence Length = 153609 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 233 agcttcttgttccctgctct 252 |||||||||||||||||||| Sbjct: 27418 agcttcttgttccctgctct 27437 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,741,638 Number of Sequences: 3902068 Number of extensions: 5741638 Number of successful extensions: 98578 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 30 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 98483 Number of HSP's gapped (non-prelim): 95 length of query: 595 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 572 effective length of database: 17,143,297,704 effective search space: 9805966286688 effective search space used: 9805966286688 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)