Clone Name | rbasd20d19 |
---|---|
Clone Library Name | barley_pub |
>ref|NM_196818.1| Oryza sativa (japonica cultivar-group) putative glutamine synthetase (OSJNBa0018F16.4), mRNA Length = 2739 Score = 387 bits (195), Expect = e-104 Identities = 500/602 (83%), Gaps = 6/602 (0%) Strand = Plus / Minus Query: 129 tagtaacggtgaatgagatcgccaaatgccccagggttcttcgagtaatgatcaatctcc 188 ||||||||||||||||||||| | ||||| ||||||||||| ||| ||||| ||||| Sbjct: 2519 tagtaacggtgaatgagatcggcgaatgctgcagggttcttctcgtagtgatcgatctca 2460 Query: 189 gccttgcgtacagcgataacagctgtaataagcttattcccgattagctcatgcaaagtt 248 ||||| |||||||| ||||| || || | ||| |||| ||||| | ||||||| || Sbjct: 2459 gcctttcgtacagcaataacggcagtgacaagtttatcgccgatcaattcatgcatgatt 2400 Query: 249 ttgtctgcagcaagtgattctacagattccagcaagtcctgcggtagccttttgagcttg 308 ||||||||||| |||| ||| |||||||||| |||||||| ||| | ||||||||||||| Sbjct: 2399 ttgtctgcagctagtgcttcgacagattccatcaagtccttcggcatccttttgagcttg 2340 Query: 309 gta------gcataatctgcaggatttgattcaattggttcaggcaactcaaggccgttc 362 | |||||| ||||||| ||||||||| |||||||||||||| ||||| || Sbjct: 2339 gagttggaggcataacctgcagggtttgattcagttggttcaggcaacgtaaggcttctc 2280 Query: 363 ctaagtccatcaatcccagcagcgacaatagcagcaagccccaagtgcggatttgcgcac 422 || |||||||||||||||||||| || ||||||||||| ||||||||||| ||||||||| Sbjct: 2279 ctgagtccatcaatcccagcagcaactatagcagcaaggcccaagtgcgggtttgcgcac 2220 Query: 423 ccatcaaatgatttaatttcgaagttgctgaccatgtcgagaggcacaccaggtgggcat 482 |||| || ||||||||||||||||||||||| | || ||||| | |||||||||||| Sbjct: 2219 gcatcgaaggatttaatttcgaagttgctgacgagatcaagaggtatcccaggtgggcat 2160 Query: 483 gcggttctcaatggagcctcccggttttcttttccccagcataggtaagctccactccat 542 || ||||||| ||||||||||| ||| || || |||||||| | || || ||||||||| Sbjct: 2159 gcagttctcagtggagcctccctgttctccttcccccagcactgatatgcaccactccat 2100 Query: 543 gtatttggttgaattcgatcatagctgttagggtgaggagcagtaaatgccaagattgat 602 || ||||| |||||||| | |||||||| |||||||||||||| ||||||||||||||| Sbjct: 2099 gtgtttggctgaattcggttgtagctgtttgggtgaggagcagtgaatgccaagattgat 2040 Query: 603 ggaaggtgacggtatactccagcaaggaaccgttctccaacttttgacattccatagtgg 662 ||||| || | ||||||||||||||||| | |||||| | | ||||||||||||||| Sbjct: 2039 ggaagatggagatatactccagcaaggaagctttctccgattcttgacattccatagtaa 1980 Query: 663 ctatattcatttgatcccataaaaacattctgctcattctttcataaactcagatgcaca 722 |||||||| |||||||||| || |||||||| || | |||||||||||||||||| Sbjct: 1979 ttatattcacttgatcccatgaacacattctgatcgaattcccataaactcagatgcaca 1920 Query: 723 tg 724 || Sbjct: 1919 tg 1918
>dbj|AK099882.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013111O16, full insert sequence Length = 3106 Score = 387 bits (195), Expect = e-104 Identities = 500/602 (83%), Gaps = 6/602 (0%) Strand = Plus / Minus Query: 129 tagtaacggtgaatgagatcgccaaatgccccagggttcttcgagtaatgatcaatctcc 188 ||||||||||||||||||||| | ||||| ||||||||||| ||| ||||| ||||| Sbjct: 2884 tagtaacggtgaatgagatcggcgaatgctgcagggttcttctcgtagtgatcgatctca 2825 Query: 189 gccttgcgtacagcgataacagctgtaataagcttattcccgattagctcatgcaaagtt 248 ||||| |||||||| ||||| || || | ||| |||| ||||| | ||||||| || Sbjct: 2824 gcctttcgtacagcaataacggcagtgacaagtttatcgccgatcaattcatgcatgatt 2765 Query: 249 ttgtctgcagcaagtgattctacagattccagcaagtcctgcggtagccttttgagcttg 308 ||||||||||| |||| ||| |||||||||| |||||||| ||| | ||||||||||||| Sbjct: 2764 ttgtctgcagctagtgcttcgacagattccatcaagtccttcggcatccttttgagcttg 2705 Query: 309 gta------gcataatctgcaggatttgattcaattggttcaggcaactcaaggccgttc 362 | |||||| ||||||| ||||||||| |||||||||||||| ||||| || Sbjct: 2704 gagttggaggcataacctgcagggtttgattcagttggttcaggcaacgtaaggcttctc 2645 Query: 363 ctaagtccatcaatcccagcagcgacaatagcagcaagccccaagtgcggatttgcgcac 422 || |||||||||||||||||||| || ||||||||||| ||||||||||| ||||||||| Sbjct: 2644 ctgagtccatcaatcccagcagcaactatagcagcaaggcccaagtgcgggtttgcgcac 2585 Query: 423 ccatcaaatgatttaatttcgaagttgctgaccatgtcgagaggcacaccaggtgggcat 482 |||| || ||||||||||||||||||||||| | || ||||| | |||||||||||| Sbjct: 2584 gcatcgaaggatttaatttcgaagttgctgacgagatcaagaggtatcccaggtgggcat 2525 Query: 483 gcggttctcaatggagcctcccggttttcttttccccagcataggtaagctccactccat 542 || ||||||| ||||||||||| ||| || || |||||||| | || || ||||||||| Sbjct: 2524 gcagttctcagtggagcctccctgttctccttcccccagcactgatatgcaccactccat 2465 Query: 543 gtatttggttgaattcgatcatagctgttagggtgaggagcagtaaatgccaagattgat 602 || ||||| |||||||| | |||||||| |||||||||||||| ||||||||||||||| Sbjct: 2464 gtgtttggctgaattcggttgtagctgtttgggtgaggagcagtgaatgccaagattgat 2405 Query: 603 ggaaggtgacggtatactccagcaaggaaccgttctccaacttttgacattccatagtgg 662 ||||| || | ||||||||||||||||| | |||||| | | ||||||||||||||| Sbjct: 2404 ggaagatggagatatactccagcaaggaagctttctccgattcttgacattccatagtaa 2345 Query: 663 ctatattcatttgatcccataaaaacattctgctcattctttcataaactcagatgcaca 722 |||||||| |||||||||| || |||||||| || | |||||||||||||||||| Sbjct: 2344 ttatattcacttgatcccatgaacacattctgatcgaattcccataaactcagatgcaca 2285 Query: 723 tg 724 || Sbjct: 2284 tg 2283
>dbj|AK066867.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013075P13, full insert sequence Length = 2900 Score = 387 bits (195), Expect = e-104 Identities = 500/602 (83%), Gaps = 6/602 (0%) Strand = Plus / Minus Query: 129 tagtaacggtgaatgagatcgccaaatgccccagggttcttcgagtaatgatcaatctcc 188 ||||||||||||||||||||| | ||||| ||||||||||| ||| ||||| ||||| Sbjct: 2678 tagtaacggtgaatgagatcggcgaatgctgcagggttcttctcgtagtgatcgatctca 2619 Query: 189 gccttgcgtacagcgataacagctgtaataagcttattcccgattagctcatgcaaagtt 248 ||||| |||||||| ||||| || || | ||| |||| ||||| | ||||||| || Sbjct: 2618 gcctttcgtacagcaataacggcagtgacaagtttatcgccgatcaattcatgcatgatt 2559 Query: 249 ttgtctgcagcaagtgattctacagattccagcaagtcctgcggtagccttttgagcttg 308 ||||||||||| |||| ||| |||||||||| |||||||| ||| | ||||||||||||| Sbjct: 2558 ttgtctgcagctagtgcttcgacagattccatcaagtccttcggcatccttttgagcttg 2499 Query: 309 gta------gcataatctgcaggatttgattcaattggttcaggcaactcaaggccgttc 362 | |||||| ||||||| ||||||||| |||||||||||||| ||||| || Sbjct: 2498 gagttggaggcataacctgcagggtttgattcagttggttcaggcaacgtaaggcttctc 2439 Query: 363 ctaagtccatcaatcccagcagcgacaatagcagcaagccccaagtgcggatttgcgcac 422 || |||||||||||||||||||| || ||||||||||| ||||||||||| ||||||||| Sbjct: 2438 ctgagtccatcaatcccagcagcaactatagcagcaaggcccaagtgcgggtttgcgcac 2379 Query: 423 ccatcaaatgatttaatttcgaagttgctgaccatgtcgagaggcacaccaggtgggcat 482 |||| || ||||||||||||||||||||||| | || ||||| | |||||||||||| Sbjct: 2378 gcatcgaaggatttaatttcgaagttgctgacgagatcaagaggtatcccaggtgggcat 2319 Query: 483 gcggttctcaatggagcctcccggttttcttttccccagcataggtaagctccactccat 542 || ||||||| ||||||||||| ||| || || |||||||| | || || ||||||||| Sbjct: 2318 gcagttctcagtggagcctccctgttctccttcccccagcactgatatgcaccactccat 2259 Query: 543 gtatttggttgaattcgatcatagctgttagggtgaggagcagtaaatgccaagattgat 602 || ||||| |||||||| | |||||||| |||||||||||||| ||||||||||||||| Sbjct: 2258 gtgtttggctgaattcggttgtagctgtttgggtgaggagcagtgaatgccaagattgat 2199 Query: 603 ggaaggtgacggtatactccagcaaggaaccgttctccaacttttgacattccatagtgg 662 ||||| || | ||||||||||||||||| | |||||| | | ||||||||||||||| Sbjct: 2198 ggaagatggagatatactccagcaaggaagctttctccgattcttgacattccatagtaa 2139 Query: 663 ctatattcatttgatcccataaaaacattctgctcattctttcataaactcagatgcaca 722 |||||||| |||||||||| || |||||||| || | |||||||||||||||||| Sbjct: 2138 ttatattcacttgatcccatgaacacattctgatcgaattcccataaactcagatgcaca 2079 Query: 723 tg 724 || Sbjct: 2078 tg 2077
>gb|AY835457.1| Saccharum officinarum glutamine synthetase (GSI) mRNA, partial cds Length = 2038 Score = 351 bits (177), Expect = 2e-93 Identities = 462/557 (82%) Strand = Plus / Minus Query: 165 ttcttcgagtaatgatcaatctccgccttgcgtacagcgataacagctgtaataagctta 224 ||||||||| ||||||| ||||| ||||| |||| ||| || ||||||| | ||| ||| Sbjct: 1737 ttcttcgagaaatgatcgatctcagccttccgtatagctatcgcagctgtgacaagttta 1678 Query: 225 ttcccgattagctcatgcaaagttttgtctgcagcaagtgattctacagattccagcaag 284 | || |||| ||||||||| || ||||||| ||||| ||||||||||||| ||| | Sbjct: 1677 tcaccaattaattcatgcaaaaccttatctgcagaaagtgcttctacagattcctgcagg 1618 Query: 285 tcctgcggtagccttttgagcttggtagcataatctgcaggatttgattcaattggttca 344 | |||||||||||| || || |||| ||| | ||| | ||| |||||||||||||||||| Sbjct: 1617 ttctgcggtagcctcttcagtttggaagcgtgatcagaagggtttgattcaattggttca 1558 Query: 345 ggcaactcaaggccgttcctaagtccatcaatcccagcagcgacaatagcagcaagcccc 404 ||||||| |||| | | || || ||||| || || ||||| || ||||||||||| ||| Sbjct: 1557 ggcaacttaaggtctcttcttagcccatcgatgccggcagcaacgatagcagcaagaccc 1498 Query: 405 aagtgcggatttgcgcacccatcaaatgatttaatttcgaagttgctgaccatgtcgaga 464 ||||||||||||||||| ||||| || ||||| || |||||||||||||| | || ||| Sbjct: 1497 aagtgcggatttgcgcagccatcgaaggatttgatctcgaagttgctgactaaatcaaga 1438 Query: 465 ggcacaccaggtgggcatgcggttctcaatggagcctcccggttttcttttccccagcat 524 |||||||||||||||||||||||||| ||||||||||||| ||| ||||| ||||||||| Sbjct: 1437 ggcacaccaggtgggcatgcggttcttaatggagcctccctgttctctttcccccagcat 1378 Query: 525 aggtaagctccactccatgtatttggttgaattcgatcatagctgttagggtgaggagca 584 | |||||||||||||| |||| ||| ||||| || ||||||||||| ||||||||||| Sbjct: 1377 tgataagctccactccaagtatctggctgaatccggtcatagctgtttgggtgaggagcg 1318 Query: 585 gtaaatgccaagattgatggaaggtgacggtatactccagcaaggaaccgttctccaact 644 ||||||||||| || |||||||| ||| | || ||||||||||||||| || ||||| | Sbjct: 1317 gtaaatgccaatatggatggaagatgatgatacactccagcaaggaactgtgctccagtt 1258 Query: 645 tttgacattccatagtggctatattcatttgatcccataaaaacattctgctcattcttt 704 ||||||||||||| ||| || | |||| ||||||||| ||||||| ||||||| Sbjct: 1257 tttgacattccatgaaaattatctttacttgaccccataaaagcattctgatcattctcc 1198 Query: 705 cataaactcagatgcac 721 || || ||||||||||| Sbjct: 1197 cacaagctcagatgcac 1181
>gb|AY109282.1| Zea mays PCO137630 mRNA sequence Length = 794 Score = 331 bits (167), Expect = 2e-87 Identities = 362/427 (84%) Strand = Plus / Minus Query: 231 attagctcatgcaaagttttgtctgcagcaagtgattctacagattccagcaagtcctgc 290 |||| |||||||||| || ||||||| ||| ||||||||||||||| ||| || |||| Sbjct: 447 attaactcatgcaaaaccttatctgcagaaagcgattctacagattcctgcaggttctgc 388 Query: 291 ggtagccttttgagcttggtagcataatctgcaggatttgattcaattggttcaggcaac 350 ||||||||||| || || | || | ||| | ||| |||||||||||||| ||||| ||| Sbjct: 387 ggtagccttttcagttttgaagagtgatcagaagggtttgattcaattggctcaggtaac 328 Query: 351 tcaaggccgttcctaagtccatcaatcccagcagcgacaatagcagcaagccccaagtgc 410 | |||| | || || ||||| || |||||||| || ||||||||||| ||||||||| Sbjct: 327 ttaaggtgtcttcttagcccatcgatgccagcagctacgatagcagcaagacccaagtgc 268 Query: 411 ggatttgcgcacccatcaaatgatttaatttcgaagttgctgaccatgtcgagaggcaca 470 ||||||||||| ||||| || ||||| || |||||||||||||| | || ||||||||| Sbjct: 267 ggatttgcgcaaccatcgaaggatttgatctcgaagttgctgactaaatcaagaggcaca 208 Query: 471 ccaggtgggcatgcggttctcaatggagcctcccggttttcttttccccagcataggtaa 530 |||||||||||||||||||| ||||||||||||| ||| ||||| ||||||||||| ||| Sbjct: 207 ccaggtgggcatgcggttcttaatggagcctccctgttctctttcccccagcatagataa 148 Query: 531 gctccactccatgtatttggttgaattcgatcatagctgttagggtgaggagcagtaaat 590 ||||||||||| |||| ||| ||||| || || |||||||| ||||||||||| |||||| Sbjct: 147 gctccactccaagtatctggctgaatccggtcgtagctgtttgggtgaggagcggtaaat 88 Query: 591 gccaagattgatggaaggtgacggtatactccagcaaggaaccgttctccaacttttgac 650 ||||| ||||| ||||||||| | || ||||||||||||||| |||||||| ||||||| Sbjct: 87 gccaatattgacggaaggtgatgatacactccagcaaggaactgttctccagtttttgac 28 Query: 651 attccat 657 ||||||| Sbjct: 27 attccat 21
>gb|AC025905.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0018F16, complete sequence Length = 179157 Score = 180 bits (91), Expect = 4e-42 Identities = 190/223 (85%) Strand = Plus / Minus Query: 337 ttggttcaggcaactcaaggccgttcctaagtccatcaatcccagcagcgacaatagcag 396 |||||||||||||| ||||| |||| |||||||||||||||||||| || ||||||| Sbjct: 57435 ttggttcaggcaacgtaaggcttctcctgagtccatcaatcccagcagcaactatagcag 57376 Query: 397 caagccccaagtgcggatttgcgcacccatcaaatgatttaatttcgaagttgctgacca 456 |||| ||||||||||| ||||||||| |||| || ||||||||||||||||||||||| | Sbjct: 57375 caaggcccaagtgcgggtttgcgcacgcatcgaaggatttaatttcgaagttgctgacga 57316 Query: 457 tgtcgagaggcacaccaggtgggcatgcggttctcaatggagcctcccggttttcttttc 516 || ||||| | |||||||||||||| ||||||| ||||||||||| ||| || || | Sbjct: 57315 gatcaagaggtatcccaggtgggcatgcagttctcagtggagcctccctgttctccttcc 57256 Query: 517 cccagcataggtaagctccactccatgtatttggttgaattcg 559 ||||||| | || || ||||||||||| ||||| |||||||| Sbjct: 57255 cccagcactgatatgcaccactccatgtgtttggctgaattcg 57213 Score = 123 bits (62), Expect = 9e-25 Identities = 134/158 (84%) Strand = Plus / Minus Query: 567 ctgttagggtgaggagcagtaaatgccaagattgatggaaggtgacggtatactccagca 626 ||||| |||||||||||||| |||||||||||||||||||| || | |||||||||||| Sbjct: 56964 ctgtttgggtgaggagcagtgaatgccaagattgatggaagatggagatatactccagca 56905 Query: 627 aggaaccgttctccaacttttgacattccatagtggctatattcatttgatcccataaaa 686 ||||| | |||||| | | ||||||||||||||| |||||||| |||||||||| || Sbjct: 56904 aggaagctttctccgattcttgacattccatagtaattatattcacttgatcccatgaac 56845 Query: 687 acattctgctcattctttcataaactcagatgcacatg 724 |||||||| || | |||||||||||||||||||| Sbjct: 56844 acattctgatcgaattcccataaactcagatgcacatg 56807 Score = 69.9 bits (35), Expect = 1e-08 Identities = 56/63 (88%) Strand = Plus / Minus Query: 247 ttttgtctgcagcaagtgattctacagattccagcaagtcctgcggtagccttttgagct 306 ||||||||||||| |||| ||| |||||||||| |||||||| ||| | ||||||||||| Sbjct: 57765 ttttgtctgcagctagtgcttcgacagattccatcaagtccttcggcatccttttgagct 57706 Query: 307 tgg 309 ||| Sbjct: 57705 tgg 57703 Score = 56.0 bits (28), Expect = 2e-04 Identities = 55/64 (85%) Strand = Plus / Minus Query: 129 tagtaacggtgaatgagatcgccaaatgccccagggttcttcgagtaatgatcaatctcc 188 ||||||||||||||||||||| | ||||| ||||||||||| ||| ||||| ||||| Sbjct: 57992 tagtaacggtgaatgagatcggcgaatgctgcagggttcttctcgtagtgatcgatctca 57933 Query: 189 gcct 192 |||| Sbjct: 57932 gcct 57929
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 180 bits (91), Expect = 4e-42 Identities = 190/223 (85%) Strand = Plus / Minus Query: 337 ttggttcaggcaactcaaggccgttcctaagtccatcaatcccagcagcgacaatagcag 396 |||||||||||||| ||||| |||| |||||||||||||||||||| || ||||||| Sbjct: 16178546 ttggttcaggcaacgtaaggcttctcctgagtccatcaatcccagcagcaactatagcag 16178487 Query: 397 caagccccaagtgcggatttgcgcacccatcaaatgatttaatttcgaagttgctgacca 456 |||| ||||||||||| ||||||||| |||| || ||||||||||||||||||||||| | Sbjct: 16178486 caaggcccaagtgcgggtttgcgcacgcatcgaaggatttaatttcgaagttgctgacga 16178427 Query: 457 tgtcgagaggcacaccaggtgggcatgcggttctcaatggagcctcccggttttcttttc 516 || ||||| | |||||||||||||| ||||||| ||||||||||| ||| || || | Sbjct: 16178426 gatcaagaggtatcccaggtgggcatgcagttctcagtggagcctccctgttctccttcc 16178367 Query: 517 cccagcataggtaagctccactccatgtatttggttgaattcg 559 ||||||| | || || ||||||||||| ||||| |||||||| Sbjct: 16178366 cccagcactgatatgcaccactccatgtgtttggctgaattcg 16178324 Score = 123 bits (62), Expect = 9e-25 Identities = 134/158 (84%) Strand = Plus / Minus Query: 567 ctgttagggtgaggagcagtaaatgccaagattgatggaaggtgacggtatactccagca 626 ||||| |||||||||||||| |||||||||||||||||||| || | |||||||||||| Sbjct: 16178075 ctgtttgggtgaggagcagtgaatgccaagattgatggaagatggagatatactccagca 16178016 Query: 627 aggaaccgttctccaacttttgacattccatagtggctatattcatttgatcccataaaa 686 ||||| | |||||| | | ||||||||||||||| |||||||| |||||||||| || Sbjct: 16178015 aggaagctttctccgattcttgacattccatagtaattatattcacttgatcccatgaac 16177956 Query: 687 acattctgctcattctttcataaactcagatgcacatg 724 |||||||| || | |||||||||||||||||||| Sbjct: 16177955 acattctgatcgaattcccataaactcagatgcacatg 16177918 Score = 69.9 bits (35), Expect = 1e-08 Identities = 56/63 (88%) Strand = Plus / Minus Query: 247 ttttgtctgcagcaagtgattctacagattccagcaagtcctgcggtagccttttgagct 306 ||||||||||||| |||| ||| |||||||||| |||||||| ||| | ||||||||||| Sbjct: 16178876 ttttgtctgcagctagtgcttcgacagattccatcaagtccttcggcatccttttgagct 16178817 Query: 307 tgg 309 ||| Sbjct: 16178816 tgg 16178814 Score = 56.0 bits (28), Expect = 2e-04 Identities = 55/64 (85%) Strand = Plus / Minus Query: 129 tagtaacggtgaatgagatcgccaaatgccccagggttcttcgagtaatgatcaatctcc 188 ||||||||||||||||||||| | ||||| ||||||||||| ||| ||||| ||||| Sbjct: 16179103 tagtaacggtgaatgagatcggcgaatgctgcagggttcttctcgtagtgatcgatctca 16179044 Query: 189 gcct 192 |||| Sbjct: 16179043 gcct 16179040
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 180 bits (91), Expect = 4e-42 Identities = 190/223 (85%) Strand = Plus / Minus Query: 337 ttggttcaggcaactcaaggccgttcctaagtccatcaatcccagcagcgacaatagcag 396 |||||||||||||| ||||| |||| |||||||||||||||||||| || ||||||| Sbjct: 16186787 ttggttcaggcaacgtaaggcttctcctgagtccatcaatcccagcagcaactatagcag 16186728 Query: 397 caagccccaagtgcggatttgcgcacccatcaaatgatttaatttcgaagttgctgacca 456 |||| ||||||||||| ||||||||| |||| || ||||||||||||||||||||||| | Sbjct: 16186727 caaggcccaagtgcgggtttgcgcacgcatcgaaggatttaatttcgaagttgctgacga 16186668 Query: 457 tgtcgagaggcacaccaggtgggcatgcggttctcaatggagcctcccggttttcttttc 516 || ||||| | |||||||||||||| ||||||| ||||||||||| ||| || || | Sbjct: 16186667 gatcaagaggtatcccaggtgggcatgcagttctcagtggagcctccctgttctccttcc 16186608 Query: 517 cccagcataggtaagctccactccatgtatttggttgaattcg 559 ||||||| | || || ||||||||||| ||||| |||||||| Sbjct: 16186607 cccagcactgatatgcaccactccatgtgtttggctgaattcg 16186565 Score = 123 bits (62), Expect = 9e-25 Identities = 134/158 (84%) Strand = Plus / Minus Query: 567 ctgttagggtgaggagcagtaaatgccaagattgatggaaggtgacggtatactccagca 626 ||||| |||||||||||||| |||||||||||||||||||| || | |||||||||||| Sbjct: 16186316 ctgtttgggtgaggagcagtgaatgccaagattgatggaagatggagatatactccagca 16186257 Query: 627 aggaaccgttctccaacttttgacattccatagtggctatattcatttgatcccataaaa 686 ||||| | |||||| | | ||||||||||||||| |||||||| |||||||||| || Sbjct: 16186256 aggaagctttctccgattcttgacattccatagtaattatattcacttgatcccatgaac 16186197 Query: 687 acattctgctcattctttcataaactcagatgcacatg 724 |||||||| || | |||||||||||||||||||| Sbjct: 16186196 acattctgatcgaattcccataaactcagatgcacatg 16186159 Score = 69.9 bits (35), Expect = 1e-08 Identities = 56/63 (88%) Strand = Plus / Minus Query: 247 ttttgtctgcagcaagtgattctacagattccagcaagtcctgcggtagccttttgagct 306 ||||||||||||| |||| ||| |||||||||| |||||||| ||| | ||||||||||| Sbjct: 16187117 ttttgtctgcagctagtgcttcgacagattccatcaagtccttcggcatccttttgagct 16187058 Query: 307 tgg 309 ||| Sbjct: 16187057 tgg 16187055 Score = 56.0 bits (28), Expect = 2e-04 Identities = 55/64 (85%) Strand = Plus / Minus Query: 129 tagtaacggtgaatgagatcgccaaatgccccagggttcttcgagtaatgatcaatctcc 188 ||||||||||||||||||||| | ||||| ||||||||||| ||| ||||| ||||| Sbjct: 16187344 tagtaacggtgaatgagatcggcgaatgctgcagggttcttctcgtagtgatcgatctca 16187285 Query: 189 gcct 192 |||| Sbjct: 16187284 gcct 16187281
>ref|NM_115178.4| Arabidopsis thaliana glutamate-ammonia ligase AT3G53180 mRNA, complete cds Length = 2939 Score = 71.9 bits (36), Expect = 3e-09 Identities = 87/104 (83%) Strand = Plus / Minus Query: 504 cggttttcttttccccagcataggtaagctccactccatgtatttggttgaattcgatca 563 ||||||||||| ||||| ||| || | ||||||||||||||||| ||||| ||||| || Sbjct: 2336 cggttttctttgccccaacattggaatgctccactccatgtattaggttggattcggtcg 2277 Query: 564 tagctgttagggtgaggagcagtaaatgccaagattgatggaag 607 |||||||| ||| | ||||| ||| || |||||||||||||| Sbjct: 2276 tagctgtttgggagtggagctataatagctaagattgatggaag 2233
>gb|AY093331.1| Arabidopsis thaliana nodulin / glutamate-ammonia ligase-like protein (At3g53180) mRNA, complete cds Length = 1594 Score = 71.9 bits (36), Expect = 3e-09 Identities = 87/104 (83%) Strand = Plus / Minus Query: 504 cggttttcttttccccagcataggtaagctccactccatgtatttggttgaattcgatca 563 ||||||||||| ||||| ||| || | ||||||||||||||||| ||||| ||||| || Sbjct: 1321 cggttttctttgccccaacattggaatgctccactccatgtattaggttggattcggtcg 1262 Query: 564 tagctgttagggtgaggagcagtaaatgccaagattgatggaag 607 |||||||| ||| | ||||| ||| || |||||||||||||| Sbjct: 1261 tagctgtttgggagtggagctataatagctaagattgatggaag 1218
>gb|AY081607.1| Arabidopsis thaliana nodulin / glutamate-ammonia ligase-like protein (At3g53180) mRNA, complete cds Length = 1263 Score = 71.9 bits (36), Expect = 3e-09 Identities = 87/104 (83%) Strand = Plus / Minus Query: 504 cggttttcttttccccagcataggtaagctccactccatgtatttggttgaattcgatca 563 ||||||||||| ||||| ||| || | ||||||||||||||||| ||||| ||||| || Sbjct: 809 cggttttctttgccccaacattggaatgctccactccatgtattaggttggattcggtcg 750 Query: 564 tagctgttagggtgaggagcagtaaatgccaagattgatggaag 607 |||||||| ||| | ||||| ||| || |||||||||||||| Sbjct: 749 tagctgtttgggagtggagctataatagctaagattgatggaag 706
>gb|AY062801.1| Arabidopsis thaliana nodulin / glutamate-ammonia ligase-like protein (At3g53180; T4D2.110) mRNA, complete cds Length = 1419 Score = 71.9 bits (36), Expect = 3e-09 Identities = 87/104 (83%) Strand = Plus / Minus Query: 504 cggttttcttttccccagcataggtaagctccactccatgtatttggttgaattcgatca 563 ||||||||||| ||||| ||| || | ||||||||||||||||| ||||| ||||| || Sbjct: 911 cggttttctttgccccaacattggaatgctccactccatgtattaggttggattcggtcg 852 Query: 564 tagctgttagggtgaggagcagtaaatgccaagattgatggaag 607 |||||||| ||| | ||||| ||| || |||||||||||||| Sbjct: 851 tagctgtttgggagtggagctataatagctaagattgatggaag 808
>gb|AY062678.1| Arabidopsis thaliana nodulin / glutamate-ammonia ligase-like protein (At3g53180; T4D2.110) mRNA, complete cds Length = 3033 Score = 71.9 bits (36), Expect = 3e-09 Identities = 87/104 (83%) Strand = Plus / Minus Query: 504 cggttttcttttccccagcataggtaagctccactccatgtatttggttgaattcgatca 563 ||||||||||| ||||| ||| || | ||||||||||||||||| ||||| ||||| || Sbjct: 2410 cggttttctttgccccaacattggaatgctccactccatgtattaggttggattcggtcg 2351 Query: 564 tagctgttagggtgaggagcagtaaatgccaagattgatggaag 607 |||||||| ||| | ||||| ||| || |||||||||||||| Sbjct: 2350 tagctgtttgggagtggagctataatagctaagattgatggaag 2307
>emb|BX823285.1|CNS0A7UD Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS1ZD11 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 2795 Score = 71.9 bits (36), Expect = 3e-09 Identities = 87/104 (83%) Strand = Plus / Minus Query: 504 cggttttcttttccccagcataggtaagctccactccatgtatttggttgaattcgatca 563 ||||||||||| ||||| ||| || | ||||||||||||||||| ||||| ||||| || Sbjct: 2308 cggttttctttgccccaacattggaatgctccactccatgtattaggttggattcggtcg 2249 Query: 564 tagctgttagggtgaggagcagtaaatgccaagattgatggaag 607 |||||||| ||| | ||||| ||| || |||||||||||||| Sbjct: 2248 tagctgtttgggagtggagctataatagctaagattgatggaag 2205
>emb|AL132958.1|ATT4D2 Arabidopsis thaliana DNA chromosome 3, BAC clone T4D2 Length = 92611 Score = 60.0 bits (30), Expect = 1e-05 Identities = 57/66 (86%) Strand = Plus / Minus Query: 504 cggttttcttttccccagcataggtaagctccactccatgtatttggttgaattcgatca 563 ||||||||||| ||||| ||| || | ||||||||||||||||| ||||| ||||| || Sbjct: 34694 cggttttctttgccccaacattggaatgctccactccatgtattaggttggattcggtcg 34635 Query: 564 tagctg 569 |||||| Sbjct: 34634 tagctg 34629
>emb|AJ238212.1|MTR238212 Medicago truncatula mRNA for glutamine synthetase I Length = 1734 Score = 48.1 bits (24), Expect = 0.041 Identities = 69/84 (82%) Strand = Plus / Minus Query: 491 caatggagcctcccggttttcttttccccagcataggtaagctccactccatgtatttgg 550 |||||||||||||| ||||| ||||||||| | | ||| || ||||||||||| || || Sbjct: 1050 caatggagcctccctattttcatttccccagaacatgtatgcaccactccatgtgttcgg 991 Query: 551 ttgaattcgatcatagctgttagg 574 || | ||||||||| ||| |||| Sbjct: 990 ctgcaatcgatcataactgatagg 967 Score = 44.1 bits (22), Expect = 0.64 Identities = 28/30 (93%) Strand = Plus / Minus Query: 164 gttcttcgagtaatgatcaatctccgcctt 193 ||||||||||||||||||||| || ||||| Sbjct: 1371 gttcttcgagtaatgatcaatttcagcctt 1342
>gb|AC134931.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0079L11, complete sequence Length = 124104 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 696 tcattctttcataaactcaga 716 ||||||||||||||||||||| Sbjct: 20349 tcattctttcataaactcaga 20329
>gb|DQ059188.1| Neriacanthus purdieanus ribosomal protein S16 (rps16) gene, intron; chloroplast Length = 747 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 428 aaatgatttaatttcgaagtt 448 ||||||||||||||||||||| Sbjct: 706 aaatgatttaatttcgaagtt 686
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 696 tcattctttcataaactcaga 716 ||||||||||||||||||||| Sbjct: 1358687 tcattctttcataaactcaga 1358667
>gb|AC074032.24| Homo sapiens 12 BAC RP4-605O3 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 40346 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 6 ctttattattaactgaaaaac 26 ||||||||||||||||||||| Sbjct: 18152 ctttattattaactgaaaaac 18132
>emb|BX000468.5| Zebrafish DNA sequence from clone DKEY-1J5 in linkage group 20, complete sequence Length = 208583 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 164 gttcttcgagtaatgatcaat 184 ||||||||||||||||||||| Sbjct: 41288 gttcttcgagtaatgatcaat 41268
>emb|CR956368.6| M.truncatula DNA sequence from clone MTH2-64D19 on chromosome 3, complete sequence Length = 139040 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 164 gttcttcgagtaatgatcaat 184 ||||||||||||||||||||| Sbjct: 115886 gttcttcgagtaatgatcaat 115866 Score = 40.1 bits (20), Expect = 10.0 Identities = 29/32 (90%) Strand = Plus / Plus Query: 164 gttcttcgagtaatgatcaatctccgccttgc 195 |||||||||||| |||||||| || ||||||| Sbjct: 49453 gttcttcgagtattgatcaatttcagccttgc 49484
>ref|NM_189656.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1800 Score = 40.1 bits (20), Expect = 10.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 315 taatctgcaggatttgattcaatt 338 |||||||||||||||||| ||||| Sbjct: 1483 taatctgcaggatttgatgcaatt 1460
>gb|BC077527.1| Xenopus laevis MGC83232 protein, mRNA (cDNA clone MGC:83232 IMAGE:6635692), complete cds Length = 2151 Score = 40.1 bits (20), Expect = 10.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 298 ttttgagcttggtagcataa 317 |||||||||||||||||||| Sbjct: 1354 ttttgagcttggtagcataa 1373
>gb|BC077521.1| Xenopus laevis MGC83098 protein, mRNA (cDNA clone MGC:83098 IMAGE:6317431), complete cds Length = 2083 Score = 40.1 bits (20), Expect = 10.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 298 ttttgagcttggtagcataa 317 |||||||||||||||||||| Sbjct: 1295 ttttgagcttggtagcataa 1314
>gb|BC042872.1| Homo sapiens transmembrane protein 26, mRNA (cDNA clone MGC:35010 IMAGE:5164050), complete cds Length = 2581 Score = 40.1 bits (20), Expect = 10.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 299 tttgagcttggtagcataat 318 |||||||||||||||||||| Sbjct: 1541 tttgagcttggtagcataat 1522
>ref|XM_590478.2| PREDICTED: Bos taurus similar to RIKEN cDNA 6430402H13 gene (LOC512879), mRNA Length = 1630 Score = 40.1 bits (20), Expect = 10.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 379 cagcagcgacaatagcagca 398 |||||||||||||||||||| Sbjct: 42 cagcagcgacaatagcagca 23
>gb|AC123052.4| Mus musculus chromosome 13 clone RP24-373D10, complete sequence Length = 175595 Score = 40.1 bits (20), Expect = 10.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 688 cattctgctcattctttcataaac 711 ||||||||| |||||||||||||| Sbjct: 4872 cattctgctaattctttcataaac 4895
>gb|AC116587.4| Mus musculus BAC clone RP23-409C18 from 12, complete sequence Length = 202651 Score = 40.1 bits (20), Expect = 10.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 509 ttcttttccccagcataggtaagc 532 ||||||||||||||| |||||||| Sbjct: 761 ttcttttccccagcagaggtaagc 784
>dbj|AK124367.1| Homo sapiens cDNA FLJ42376 fis, clone UTERU2035323 Length = 2342 Score = 40.1 bits (20), Expect = 10.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 299 tttgagcttggtagcataat 318 |||||||||||||||||||| Sbjct: 169 tttgagcttggtagcataat 150
>gb|AC068892.7| Homo sapiens chromosome 10 clone RP11-116D21, complete sequence Length = 161178 Score = 40.1 bits (20), Expect = 10.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 299 tttgagcttggtagcataat 318 |||||||||||||||||||| Sbjct: 24057 tttgagcttggtagcataat 24038
>gb|AC156035.5| Mus musculus BAC clone RP23-302M20 from chromosome 12, complete sequence Length = 187168 Score = 40.1 bits (20), Expect = 10.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 509 ttcttttccccagcataggtaagc 532 ||||||||||||||| |||||||| Sbjct: 26122 ttcttttccccagcagaggtaagc 26099
>gb|AC080166.6| Homo sapiens BAC clone RP11-813C7 from 2, complete sequence Length = 179961 Score = 40.1 bits (20), Expect = 10.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 386 gacaatagcagcaagcccca 405 |||||||||||||||||||| Sbjct: 139154 gacaatagcagcaagcccca 139135
>gb|AE001437.1| Clostridium acetobutylicum ATCC 824, complete genome Length = 3940880 Score = 40.1 bits (20), Expect = 10.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 562 catagctgttagggtgagga 581 |||||||||||||||||||| Sbjct: 1245383 catagctgttagggtgagga 1245402
>gb|AE000782.1| Archaeoglobus fulgidus DSM 4304, complete genome Length = 2178400 Score = 40.1 bits (20), Expect = 10.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 373 caatcccagcagcgacaatagcagcaag 400 ||||| |||||||| ||||||||||||| Sbjct: 637612 caatcacagcagcggcaatagcagcaag 637639
>gb|AC132433.3| Mus musculus BAC clone RP23-214L14 from 13, complete sequence Length = 229555 Score = 40.1 bits (20), Expect = 10.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 688 cattctgctcattctttcataaac 711 ||||||||| |||||||||||||| Sbjct: 198496 cattctgctaattctttcataaac 198519
>emb|CR382131.1| Yarrowia lipolytica chromosome E of strain CLIB 122 of Yarrowia lipolytica Length = 4224103 Score = 40.1 bits (20), Expect = 10.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 379 cagcagcgacaatagcagca 398 |||||||||||||||||||| Sbjct: 745791 cagcagcgacaatagcagca 745810 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,332,493 Number of Sequences: 3902068 Number of extensions: 6332493 Number of successful extensions: 114573 Number of sequences better than 10.0: 37 Number of HSP's better than 10.0 without gapping: 37 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 114330 Number of HSP's gapped (non-prelim): 232 length of query: 727 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 704 effective length of database: 17,143,297,704 effective search space: 12068881583616 effective search space used: 12068881583616 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)