ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd20d17
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1EP300_HUMAN (Q09472) E1A-associated protein p300 (EC 2.3.1.48) 41 0.003
2CBP_HUMAN (Q92793) CREB-binding protein (EC 2.3.1.48) 38 0.019
3CBP_MOUSE (P45481) CREB-binding protein (EC 2.3.1.48) 35 0.21
4CBP1_CAEEL (P34545) Protein cbp-1 32 1.4
5FBN2_MOUSE (Q61555) Fibrillin-2 precursor 30 4.0
6ESAM_RAT (Q6AYD4) Endothelial cell-selective adhesion molecule p... 30 6.8
7ATR_CAEEL (Q22258) Serine/threonine-protein kinase ATR (EC 2.7.1... 30 6.8
8ESAM_MOUSE (Q925F2) Endothelial cell-selective adhesion molecule... 29 8.9

>EP300_HUMAN (Q09472) E1A-associated protein p300 (EC 2.3.1.48)|
          Length = 2414

 Score = 40.8 bits (94), Expect = 0.003
 Identities = 21/51 (41%), Positives = 34/51 (66%)
 Frame = -2

Query: 582  HARTCKESKCTIPRCRDLKAHLRWTQQQSESRRRAAVNEMMRQRAAEVARS 430
            HA+ C+E+KC +P C ++K  LR  QQQ + R + A  +M+R+R A + R+
Sbjct: 1792 HAKHCQENKCPVPFCLNIKQKLR--QQQLQHRLQQA--QMLRRRMASMQRT 1838



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>CBP_HUMAN (Q92793) CREB-binding protein (EC 2.3.1.48)|
          Length = 2442

 Score = 38.1 bits (87), Expect = 0.019
 Identities = 20/46 (43%), Positives = 31/46 (67%)
 Frame = -2

Query: 582  HARTCKESKCTIPRCRDLKAHLRWTQQQSESRRRAAVNEMMRQRAA 445
            HA+ C+E+KC +P C ++K  LR  QQQ + R + A  ++MR+R A
Sbjct: 1829 HAKHCQENKCPVPFCLNIKHKLR--QQQIQHRLQQA--QLMRRRMA 1870



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>CBP_MOUSE (P45481) CREB-binding protein (EC 2.3.1.48)|
          Length = 2441

 Score = 34.7 bits (78), Expect = 0.21
 Identities = 18/46 (39%), Positives = 31/46 (67%)
 Frame = -2

Query: 582  HARTCKESKCTIPRCRDLKAHLRWTQQQSESRRRAAVNEMMRQRAA 445
            HA+ C+E+KC +P C ++K ++R  QQQ +   + A  ++MR+R A
Sbjct: 1830 HAKHCQENKCPVPFCLNIKHNVR--QQQIQHCLQQA--QLMRRRMA 1871



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>CBP1_CAEEL (P34545) Protein cbp-1|
          Length = 2056

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 16/44 (36%), Positives = 26/44 (59%)
 Frame = -2

Query: 582  HARTCKESKCTIPRCRDLKAHLRWTQQQSESRRRAAVNEMMRQR 451
            HA+ C    CT+P C +++  L   +Q+   +RRA  + MMR+R
Sbjct: 1614 HAKHCTRDACTVPFCMNIRQKL--AEQKRSQQRRA--DMMMRRR 1653



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>FBN2_MOUSE (Q61555) Fibrillin-2 precursor|
          Length = 2907

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = -2

Query: 147  TCAK*AILGVERFFCCCCLGSE--NTCKEQTDQNRTEH 40
            +C   A +GV R  CCC LG    N C+     N TEH
Sbjct: 1585 SCNTEAGVGVSRSSCCCSLGKAWGNPCETCPPVNSTEH 1622



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>ESAM_RAT (Q6AYD4) Endothelial cell-selective adhesion molecule precursor|
          Length = 394

 Score = 29.6 bits (65), Expect = 6.8
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +3

Query: 126 VWPILHMYKEPSKILSYMSRLLQNKTDTTIQYKLPTARPSI 248
           +W +    KEP ++LSY    L NK   T+ + + T   S+
Sbjct: 74  IWFLEQEGKEPKQVLSYFKGSLSNKPGVTLVHSISTRNVSL 114



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>ATR_CAEEL (Q22258) Serine/threonine-protein kinase ATR (EC 2.7.11.1) (Ataxia|
           telangiectasia and Rad3-related protein homolog) (ATR
           homolog) (ATM-like protein 1) (Ce-atl-1)
          Length = 2531

 Score = 29.6 bits (65), Expect = 6.8
 Identities = 20/85 (23%), Positives = 34/85 (40%), Gaps = 2/85 (2%)
 Frame = +3

Query: 33  INHVLFCSDLFVPYRCSLNRDNNNKKTFRRQVWPILHMYKEPSKILSYMSRLLQNKTDTT 212
           ++  LF  +LF  +     + + N  TF + +  I H  ++  K+L     L Q      
Sbjct: 236 LDQALFIDELFATFNSLTAKKSTNHMTFPKLLNEIQHFLQDHGKVLIMHKELRQKPVQWL 295

Query: 213 IQY--KLPTARPSIGMLRQLSAWVL 281
           I Y   +  A    G+L   S  +L
Sbjct: 296 IIYLELIDDANDKFGLLENFSLLLL 320



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>ESAM_MOUSE (Q925F2) Endothelial cell-selective adhesion molecule precursor|
          Length = 394

 Score = 29.3 bits (64), Expect = 8.9
 Identities = 11/41 (26%), Positives = 25/41 (60%)
 Frame = +3

Query: 126 VWPILHMYKEPSKILSYMSRLLQNKTDTTIQYKLPTARPSI 248
           +W +    KEP+++LSY++ ++ NK  T + + + +   S+
Sbjct: 74  IWFLEQEGKEPNQVLSYINGVMTNKPGTALVHSISSRNVSL 114


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,822,957
Number of Sequences: 219361
Number of extensions: 1757494
Number of successful extensions: 4504
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4375
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4499
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 5158951200
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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