ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd20d13 |
|---|---|
| Clone Library Name | barley_pub |
>ISPH_ZYMMO (Q5NP61) 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC| 1.17.1.2) Length = 340 Score = 32.0 bits (71), Expect = 1.7 Identities = 36/145 (24%), Positives = 52/145 (35%), Gaps = 21/145 (14%) Frame = -3 Query: 567 HLQDDTEAHQEEHHQGLAGTEGGAEVCHAAHQLIETVQGEVATAGVHYVVVRLLVGNQVH 388 H+ D +A + L+ G +AH + TVQ E G+ V + N+VH Sbjct: 45 HVVDTLKAKGAVFVEELSEVPPGEVTVFSAHGVARTVQKEAEERGLPVVDATCPLVNKVH 104 Query: 387 -------------MVVVHGRSPGAGASLGQDQGPHHLCRIA--------PPLPPHLRNVQ 271 +++ H P +LGQ GP HL A P P Q Sbjct: 105 AQGRRYLSHGRTLILIGHAGHPEIEGTLGQIDGPVHLVGSAEQVDSLDIPSDTPVAFITQ 164 Query: 270 VTIGPGLCRSVLKGRRVWFPMEMAP 196 T+ RSV+ R F + P Sbjct: 165 TTLSVDDTRSVIAALRKKFTDVIGP 189
>LAP4_HUMAN (Q14160) LAP4 protein (Scribble homolog protein) (hScrib)| Length = 1630 Score = 31.2 bits (69), Expect = 3.0 Identities = 22/58 (37%), Positives = 27/58 (46%), Gaps = 10/58 (17%) Frame = -2 Query: 325 PPPVQDRSPLASPSPKRASND---RSRSMSVSP-------EGKKGLVSYGDGSPDSAG 182 P PV+D P S SP R S D RS+ SP +G+ LV G SP + G Sbjct: 1548 PTPVEDLGPQTSTSPGRLSPDFAEELRSLEPSPSPGPQEEDGEVALVLLGRPSPGAVG 1605
>RADA_AERPE (Q9YFY1) DNA repair and recombination protein radA| Length = 319 Score = 31.2 bits (69), Expect = 3.0 Identities = 17/64 (26%), Positives = 30/64 (46%) Frame = +1 Query: 256 GTYRYLHVSEMGRQGGSDPAQVVGTLILTQRGSCSWRATVHDHHVNLVSHQEANDYVVDS 435 GT+R+ + +M R G DP +V+ + + + + + D +V + VVDS Sbjct: 148 GTFRWERIEQMARGVGLDPDEVMKNIYWIRAINSHHQIAIVDKLFTMVKNDNIKLVVVDS 207 Query: 436 CCSH 447 SH Sbjct: 208 VTSH 211
>GCR_SHEEP (P35547) Glucocorticoid receptor (GR) (Fragment)| Length = 314 Score = 30.4 bits (67), Expect = 5.1 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 9/61 (14%) Frame = -3 Query: 408 LVGNQVHMVVVHGRSPGAG---------ASLGQDQGPHHLCRIAPPLPPHLRNVQVTIGP 256 ++GN++ + VHG S G ASL Q Q + ++ PP+P N G Sbjct: 173 IIGNKMSAISVHGVSTSGGQMYHYDMNTASLSQQQDQKPIFKVIPPIPVGSENWNRCQGS 232 Query: 255 G 253 G Sbjct: 233 G 233
>PYRC_LACLE (P48795) Dihydroorotase (EC 3.5.2.3) (DHOase)| Length = 427 Score = 30.4 bits (67), Expect = 5.1 Identities = 23/97 (23%), Positives = 39/97 (40%), Gaps = 7/97 (7%) Frame = -3 Query: 585 GALVIDHLQDDTEAH-------QEEHHQGLAGTEGGAEVCHAAHQLIETVQGEVATAGVH 427 G + +H+QDD+ H ++ GL G G +E A L+ GVH Sbjct: 171 GLAICEHIQDDSLYHHGVMNAGKKAEELGLPGILGVSESAQLARDLV-----LAQATGVH 225 Query: 426 YVVVRLLVGNQVHMVVVHGRSPGAGASLGQDQGPHHL 316 Y + V ++ + + G ++ + PHHL Sbjct: 226 YHACHVSTKESVELIRI---AKEYGINVTAEATPHHL 259
>HM14A_CHICK (P12902) Nonhistone chromosomal protein HMG-14A| Length = 104 Score = 30.0 bits (66), Expect = 6.6 Identities = 15/57 (26%), Positives = 26/57 (45%) Frame = -2 Query: 325 PPPVQDRSPLASPSPKRASNDRSRSMSVSPEGKKGLVSYGDGSPDSAGK*GEKERTH 155 PP + + A+P ++A+ND+ + +GKKG + + A KE H Sbjct: 28 PPKPEPKPKKAAPKKEKAANDKKEDKKAATKGKKGAKGKDETKQEDA-----KEENH 79
>ISPH_BORPE (Q7VYS2) 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC| 1.17.1.2) Length = 325 Score = 30.0 bits (66), Expect = 6.6 Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 13/75 (17%) Frame = -3 Query: 501 GAEVCHAAHQLIETVQGEVATAG-------------VHYVVVRLLVGNQVHMVVVHGRSP 361 GA V +AH + + V+GE G VH V R+ + +++ H P Sbjct: 75 GAIVVFSAHGVSQAVRGEAEARGLRVFDATCPLVTKVHIEVARMRAAGREIVMIGHKGHP 134 Query: 360 GAGASLGQDQGPHHL 316 +LGQ QG +L Sbjct: 135 EVEGTLGQAQGGMYL 149
>VWF_HUMAN (P04275) Von Willebrand factor precursor (vWF) [Contains: Von| Willebrand antigen II] Length = 2813 Score = 30.0 bits (66), Expect = 6.6 Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 5/35 (14%) Frame = -3 Query: 339 QDQGPHHLCRIAPP-----LPPHLRNVQVTIGPGL 250 +D+ +LC +AP LPPH+ QVT+GPGL Sbjct: 1450 RDEIVSYLCDLAPEAPPPTLPPHM--AQVTVGPGL 1482
>ISPH_BORPA (Q7W9B4) 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC| 1.17.1.2) Length = 326 Score = 30.0 bits (66), Expect = 6.6 Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 13/75 (17%) Frame = -3 Query: 501 GAEVCHAAHQLIETVQGEVATAG-------------VHYVVVRLLVGNQVHMVVVHGRSP 361 GA V +AH + + V+GE G VH V R+ + +++ H P Sbjct: 76 GAIVVFSAHGVSQAVRGEAEARGLRVFDATCPLVTKVHIEVARMRAAGREIVMIGHKGHP 135 Query: 360 GAGASLGQDQGPHHL 316 +LGQ QG +L Sbjct: 136 EVEGTLGQAQGGMYL 150
>ISPH_BORBR (Q7WHF2) 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC| 1.17.1.2) Length = 326 Score = 30.0 bits (66), Expect = 6.6 Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 13/75 (17%) Frame = -3 Query: 501 GAEVCHAAHQLIETVQGEVATAG-------------VHYVVVRLLVGNQVHMVVVHGRSP 361 GA V +AH + + V+GE G VH V R+ + +++ H P Sbjct: 76 GAIVVFSAHGVSQAVRGEAEARGLRVFDATCPLVTKVHIEVARMRAAGREIVMIGHKGHP 135 Query: 360 GAGASLGQDQGPHHL 316 +LGQ QG +L Sbjct: 136 EVEGTLGQAQGGMYL 150
>GCR_CAVPO (P49115) Glucocorticoid receptor (GR)| Length = 771 Score = 29.6 bits (65), Expect = 8.7 Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 9/61 (14%) Frame = -3 Query: 408 LVGNQVHMVVVHGRSPGAG---------ASLGQDQGPHHLCRIAPPLPPHLRNVQVTIGP 256 ++GN++ + VHG S G ASL Q Q + + PP+P N G Sbjct: 307 IIGNKMSAISVHGVSTSGGQMYHYDMNTASLSQQQDQKPIFNVIPPIPVGSENWNRCQGS 366 Query: 255 G 253 G Sbjct: 367 G 367
>B3GT4_HUMAN (O96024) Beta-1,3-galactosyltransferase 4 (EC 2.4.1.62)| (Beta-1,3-GalTase 4) (Beta3Gal-T4) (b3Gal-T4) (Ganglioside galactosyltransferase) (UDP-galactose:beta-N-acetyl-galactosamine-beta-1, 3-galactosyltransferase) (GAL-T2) (GalT4) Length = 378 Score = 29.6 bits (65), Expect = 8.7 Identities = 30/119 (25%), Positives = 47/119 (39%), Gaps = 15/119 (12%) Frame = -3 Query: 432 VHYVVVRLLVGNQVHMVVVHGRSPGAGASLGQDQGPHHLCRIAPPLPPHLRNVQVTIGPG 253 +H V LL +VH V R+PG + ++Q PH P PP+ + Sbjct: 217 LHSEEVPLLYLGRVHWRVNPSRTPGGRHRVSEEQWPH----TWGPFPPYASGTGYVLSAS 272 Query: 252 LCRSVLK--GRRVWFPMEMAPLILLGSRGKKKGL--TSC--------FP---CCFSALL 121 + +LK R P+E + +G ++ GL T C +P CC+ L Sbjct: 273 AVQLILKVASRAPLLPLED---VFVGVSARRGGLAPTQCVKLAGATHYPLDRCCYGKFL 328
>GCR_PONPY (Q5R9P5) Glucocorticoid receptor (GR)| Length = 777 Score = 29.6 bits (65), Expect = 8.7 Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 9/61 (14%) Frame = -3 Query: 408 LVGNQVHMVVVHGRSPGAG---------ASLGQDQGPHHLCRIAPPLPPHLRNVQVTIGP 256 ++GN++ + VHG S G ASL Q Q + + PP+P N G Sbjct: 311 IIGNKMSAISVHGVSTSGGQMYHYDMNTASLSQQQDQKPIFNVIPPIPVGSENWNRCQGS 370 Query: 255 G 253 G Sbjct: 371 G 371
>GCR_HUMAN (P04150) Glucocorticoid receptor (GR)| Length = 777 Score = 29.6 bits (65), Expect = 8.7 Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 9/61 (14%) Frame = -3 Query: 408 LVGNQVHMVVVHGRSPGAG---------ASLGQDQGPHHLCRIAPPLPPHLRNVQVTIGP 256 ++GN++ + VHG S G ASL Q Q + + PP+P N G Sbjct: 311 IIGNKMSAISVHGVSTSGGQMYHYDMNTASLSQQQDQKPIFNVIPPIPVGSENWNRCQGS 370 Query: 255 G 253 G Sbjct: 371 G 371 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 93,411,336 Number of Sequences: 219361 Number of extensions: 2148392 Number of successful extensions: 7277 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 6806 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 7257 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6541540170 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
