ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd20d04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_473883.1| Oryza sativa (japonica cultivar-group), predic... 174 2e-40
2emb|AL662950.2|OSJN00152 Oryza sativa genomic DNA, chromosome 4,... 174 2e-40
3dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 174 2e-40
4dbj|AK069739.1| Oryza sativa (japonica cultivar-group) cDNA clon... 174 2e-40
5gb|AC127586.4| Mus musculus BAC clone RP24-142A16 from chromosom... 46 0.13
6gb|AC159005.3| Mus musculus BAC clone RP23-67F4 from chromosome ... 46 0.13
7gb|AC136971.3| Oryza sativa (japonica cultivar-group) chromosome... 42 2.1
8gb|AC111122.13| Mus musculus chromosome 7, clone RP23-230L8, com... 42 2.1
9gb|AC147251.3| Mus musculus BAC clone RP24-114L16 from chromosom... 42 2.1
10gb|AC123950.3| Mus musculus BAC clone RP23-162I9 from chromosome... 42 2.1
11emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete ... 42 2.1
12gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, compl... 42 2.1
13emb|CR478323.2| Mouse DNA sequence from clone WI1-1055K5 on chro... 42 2.1
14dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.1
15dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.1
16dbj|AP005428.2| Oryza sativa (japonica cultivar-group) genomic D... 42 2.1
17gb|AC105957.13| Mus musculus chromosome 18, clone RP24-303O20, c... 42 2.1
18emb|AL772399.9| Mouse DNA sequence from clone RP23-220L1 on chro... 42 2.1
19gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 42 2.1
20gb|AC154672.2| Mus musculus BAC clone RP24-297H12 from 14, compl... 42 2.1
21emb|AL805976.12| Mouse DNA sequence from clone RP23-34H1 on chro... 42 2.1
22gb|AC117715.10| Mus musculus chromosome 7, clone RP23-62M19, com... 42 2.1
23gb|AC131682.4| Mus musculus BAC clone RP23-355L3 from chromosome... 42 2.1
24gb|AC168276.3| Mus musculus BAC RP24-485I12 (Roswell Park Cance... 40 8.3
25gb|AC146508.3| Pan troglodytes BAC clone RP43-172A15 from 7, com... 40 8.3
26gb|AC134576.3| Mus musculus BAC clone RP24-68G10 from chromosome... 40 8.3
27gb|AC115039.7| Mus musculus chromosome 6, clone RP24-279C2, comp... 40 8.3
28gb|AC004743.1| Homo sapiens PAC clone RP4-807C15 from 7, complet... 40 8.3
29ref|XM_536814.2| PREDICTED: Canis familiaris similar to RGD, leu... 40 8.3
30emb|AL939110.1|SCO939110 Streptomyces coelicolor A3(2) complete ... 40 8.3
31emb|AL590626.9| Mouse DNA sequence from clone RP23-143O13 on chr... 40 8.3
32gb|AE012112.1| Xanthomonas campestris pv. campestris str. ATCC 3... 40 8.3
33gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, ... 40 8.3
34gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome 40 8.3
35dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.3
36gb|AC154549.2| Mus musculus BAC clone RP23-443L15 from chromosom... 40 8.3
37gb|AC008736.6|AC008736 Homo sapiens chromosome 19 clone CTD-2538... 40 8.3
38dbj|BA000011.4| Thermoplasma volcanium GSS1 DNA, complete genome 40 8.3
39dbj|AP003021.2| Oryza sativa (japonica cultivar-group) genomic D... 40 8.3
40gb|AC154676.2| Mus musculus BAC clone RP23-146O19 from 17, compl... 40 8.3
41gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome 40 8.3
42gb|AC133955.4| Mus musculus BAC clone RP23-249M4 from 6, complet... 40 8.3
43emb|AM114763.1| Platynereis dumerilii mRNA for crooked neck prot... 40 8.3
44emb|AL670256.6| Mouse DNA sequence from clone RP23-300H22 on chr... 40 8.3 
>ref|XM_473883.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1602

 Score =  174 bits (88), Expect = 2e-40
 Identities = 190/224 (84%)
 Strand = Plus / Minus

                                                                        
Query: 385  tgggagatgatctcccagtcctccctcaccgacgtgacgtcgccacgtttctcgtggtgc 444
            ||||||||||||||||||||||| || ||||| ||||  || ||  |||||||||||| |
Sbjct: 1421 tgggagatgatctcccagtcctctctaaccgatgtgatatccccgtgtttctcgtggtac 1362

                                                                        
Query: 445  ttctcgatctcgtagatggttggcaggatgacatagtcattgagggggtcgtagaatggg 504
            |||||||||||| ||   ||||| || ||||| ||||| |||||||| ||||||||||||
Sbjct: 1361 ttctcgatctcgaaggctgttgggagtatgacgtagtcgttgaggggatcgtagaatggg 1302

                                                                        
Query: 505  tcaggttcgcctgcgtgcagccagtgctggactatgcggaacacgtggtggtcgcacacg 564
            ||||| || || || || ||||||||||| | ||| |||||||||||  | || || |||
Sbjct: 1301 tcaggctcaccggcatggagccagtgctgaattatccggaacacgtgacgatcacagacg 1242

                                                        
Query: 565  attcctcggtggtcggcagcaaccccaattctcgccactgcatc 608
            |||||||||||||| ||||||||||||| ||| |||||||||||
Sbjct: 1241 attcctcggtggtctgcagcaaccccaactcttgccactgcatc 1198



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                             
Query: 215  tgactccaacagccctgacttccacatgctgcc 247
            |||||||||| ||||| ||||||||||||||||
Sbjct: 1588 tgactccaactgccctaacttccacatgctgcc 1556
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>emb|AL662950.2|OSJN00152 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0008M17,
             complete sequence
          Length = 133279

 Score =  174 bits (88), Expect = 2e-40
 Identities = 190/224 (84%)
 Strand = Plus / Minus

                                                                         
Query: 385   tgggagatgatctcccagtcctccctcaccgacgtgacgtcgccacgtttctcgtggtgc 444
             ||||||||||||||||||||||| || ||||| ||||  || ||  |||||||||||| |
Sbjct: 74611 tgggagatgatctcccagtcctctctaaccgatgtgatatccccgtgtttctcgtggtac 74552

                                                                         
Query: 445   ttctcgatctcgtagatggttggcaggatgacatagtcattgagggggtcgtagaatggg 504
             |||||||||||| ||   ||||| || ||||| ||||| |||||||| ||||||||||||
Sbjct: 74551 ttctcgatctcgaaggctgttgggagtatgacgtagtcgttgaggggatcgtagaatggg 74492

                                                                         
Query: 505   tcaggttcgcctgcgtgcagccagtgctggactatgcggaacacgtggtggtcgcacacg 564
             ||||| || || || || ||||||||||| | ||| |||||||||||  | || || |||
Sbjct: 74491 tcaggctcaccggcatggagccagtgctgaattatccggaacacgtgacgatcacagacg 74432

                                                         
Query: 565   attcctcggtggtcggcagcaaccccaattctcgccactgcatc 608
             |||||||||||||| ||||||||||||| ||| |||||||||||
Sbjct: 74431 attcctcggtggtctgcagcaaccccaactcttgccactgcatc 74388



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                              
Query: 215   tgactccaacagccctgacttccacatgctgcc 247
             |||||||||| ||||| ||||||||||||||||
Sbjct: 74778 tgactccaactgccctaacttccacatgctgcc 74746
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  174 bits (88), Expect = 2e-40
 Identities = 190/224 (84%)
 Strand = Plus / Minus

                                                                            
Query: 385      tgggagatgatctcccagtcctccctcaccgacgtgacgtcgccacgtttctcgtggtgc 444
                ||||||||||||||||||||||| || ||||| ||||  || ||  |||||||||||| |
Sbjct: 31253009 tgggagatgatctcccagtcctctctaaccgatgtgatatccccgtgtttctcgtggtac 31252950

                                                                            
Query: 445      ttctcgatctcgtagatggttggcaggatgacatagtcattgagggggtcgtagaatggg 504
                |||||||||||| ||   ||||| || ||||| ||||| |||||||| ||||||||||||
Sbjct: 31252949 ttctcgatctcgaaggctgttgggagtatgacgtagtcgttgaggggatcgtagaatggg 31252890

                                                                            
Query: 505      tcaggttcgcctgcgtgcagccagtgctggactatgcggaacacgtggtggtcgcacacg 564
                ||||| || || || || ||||||||||| | ||| |||||||||||  | || || |||
Sbjct: 31252889 tcaggctcaccggcatggagccagtgctgaattatccggaacacgtgacgatcacagacg 31252830

                                                            
Query: 565      attcctcggtggtcggcagcaaccccaattctcgccactgcatc 608
                |||||||||||||| ||||||||||||| ||| |||||||||||
Sbjct: 31252829 attcctcggtggtctgcagcaaccccaactcttgccactgcatc 31252786



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                                 
Query: 215      tgactccaacagccctgacttccacatgctgcc 247
                |||||||||| ||||| ||||||||||||||||
Sbjct: 31253176 tgactccaactgccctaacttccacatgctgcc 31253144
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>dbj|AK069739.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023027J22, full
            insert sequence
          Length = 2334

 Score =  174 bits (88), Expect = 2e-40
 Identities = 190/224 (84%)
 Strand = Plus / Minus

                                                                        
Query: 385  tgggagatgatctcccagtcctccctcaccgacgtgacgtcgccacgtttctcgtggtgc 444
            ||||||||||||||||||||||| || ||||| ||||  || ||  |||||||||||| |
Sbjct: 1855 tgggagatgatctcccagtcctctctaaccgatgtgatatccccgtgtttctcgtggtac 1796

                                                                        
Query: 445  ttctcgatctcgtagatggttggcaggatgacatagtcattgagggggtcgtagaatggg 504
            |||||||||||| ||   ||||| || ||||| ||||| |||||||| ||||||||||||
Sbjct: 1795 ttctcgatctcgaaggctgttgggagtatgacgtagtcgttgaggggatcgtagaatggg 1736

                                                                        
Query: 505  tcaggttcgcctgcgtgcagccagtgctggactatgcggaacacgtggtggtcgcacacg 564
            ||||| || || || || ||||||||||| | ||| |||||||||||  | || || |||
Sbjct: 1735 tcaggctcaccggcatggagccagtgctgaattatccggaacacgtgacgatcacagacg 1676

                                                        
Query: 565  attcctcggtggtcggcagcaaccccaattctcgccactgcatc 608
            |||||||||||||| ||||||||||||| ||| |||||||||||
Sbjct: 1675 attcctcggtggtctgcagcaaccccaactcttgccactgcatc 1632



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                             
Query: 215  tgactccaacagccctgacttccacatgctgcc 247
            |||||||||| ||||| ||||||||||||||||
Sbjct: 2022 tgactccaactgccctaacttccacatgctgcc 1990
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>gb|AC127586.4| Mus musculus BAC clone RP24-142A16 from chromosome 7, complete sequence
          Length = 164692

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 77    atttacaagcagtacaccatatt 99
             |||||||||||||||||||||||
Sbjct: 38251 atttacaagcagtacaccatatt 38273
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>gb|AC159005.3| Mus musculus BAC clone RP23-67F4 from chromosome 7, complete sequence
          Length = 230018

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 77     atttacaagcagtacaccatatt 99
              |||||||||||||||||||||||
Sbjct: 165634 atttacaagcagtacaccatatt 165656
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>gb|AC136971.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0032K12,
              complete sequence
          Length = 166936

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                               
Query: 173    tacttaagtactgcaataggccccgtagctagc 205
              |||||| ||||||||| |||| |||||||||||
Sbjct: 119342 tacttacgtactgcaaaaggcaccgtagctagc 119310
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>gb|AC111122.13| Mus musculus chromosome 7, clone RP23-230L8, complete sequence
          Length = 175772

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 17     tgattatttccttcctccttc 37
              |||||||||||||||||||||
Sbjct: 108741 tgattatttccttcctccttc 108761
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>gb|AC147251.3| Mus musculus BAC clone RP24-114L16 from chromosome 18, complete sequence
          Length = 177962

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 17     tgattatttccttcctccttc 37
              |||||||||||||||||||||
Sbjct: 164717 tgattatttccttcctccttc 164697
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>gb|AC123950.3| Mus musculus BAC clone RP23-162I9 from chromosome 18, complete sequence
          Length = 181095

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 17     tgattatttccttcctccttc 37
              |||||||||||||||||||||
Sbjct: 157689 tgattatttccttcctccttc 157709
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>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome
          Length = 5178466

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 282     ctgcgcctcgtccagcaggcc 302
               |||||||||||||||||||||
Sbjct: 2864566 ctgcgcctcgtccagcaggcc 2864546
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>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence
          Length = 4895836

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 444     cttctcgatctcgtagatggt 464
               |||||||||||||||||||||
Sbjct: 3798739 cttctcgatctcgtagatggt 3798759
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>emb|CR478323.2| Mouse DNA sequence from clone WI1-1055K5 on chromosome X, complete
             sequence
          Length = 35468

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 17    tgattatttccttcctccttc 37
             |||||||||||||||||||||
Sbjct: 12816 tgattatttccttcctccttc 12796
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                                
Query: 173     tacttaagtactgcaataggccccgtagctagc 205
               |||||| ||||||||| |||| |||||||||||
Sbjct: 6994084 tacttacgtactgcaaaaggcaccgtagctagc 6994052
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 371     cgtcgccgtcagtgtgggaga 391
               |||||||||||||||||||||
Sbjct: 9562655 cgtcgccgtcagtgtgggaga 9562675
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>dbj|AP005428.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0693E08
          Length = 157969

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 371   cgtcgccgtcagtgtgggaga 391
             |||||||||||||||||||||
Sbjct: 26873 cgtcgccgtcagtgtgggaga 26893
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>gb|AC105957.13| Mus musculus chromosome 18, clone RP24-303O20, complete sequence
          Length = 167570

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 17    tgattatttccttcctccttc 37
             |||||||||||||||||||||
Sbjct: 38449 tgattatttccttcctccttc 38469
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>emb|AL772399.9| Mouse DNA sequence from clone RP23-220L1 on chromosome 4, complete
             sequence
          Length = 103488

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 25    tccttcctccttcctgctcaa 45
             |||||||||||||||||||||
Sbjct: 53499 tccttcctccttcctgctcaa 53519
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                                
Query: 173     tacttaagtactgcaataggccccgtagctagc 205
               |||||| ||||||||| |||| |||||||||||
Sbjct: 7060551 tacttacgtactgcaaaaggcaccgtagctagc 7060519
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>gb|AC154672.2| Mus musculus BAC clone RP24-297H12 from 14, complete sequence
          Length = 163733

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 17    tgattatttccttcctccttc 37
             |||||||||||||||||||||
Sbjct: 47001 tgattatttccttcctccttc 47021
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>emb|AL805976.12| Mouse DNA sequence from clone RP23-34H1 on chromosome 4, complete
              sequence
          Length = 192098

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 17     tgattatttccttcctccttc 37
              |||||||||||||||||||||
Sbjct: 100878 tgattatttccttcctccttc 100898
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>gb|AC117715.10| Mus musculus chromosome 7, clone RP23-62M19, complete sequence
          Length = 234594

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 17     tgattatttccttcctccttc 37
              |||||||||||||||||||||
Sbjct: 221297 tgattatttccttcctccttc 221277
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>gb|AC131682.4| Mus musculus BAC clone RP23-355L3 from chromosome unknown, complete
              sequence
          Length = 196773

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 17     tgattatttccttcctccttc 37
              |||||||||||||||||||||
Sbjct: 175037 tgattatttccttcctccttc 175057
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>gb|AC168276.3| Mus musculus  BAC RP24-485I12 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 186675

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 18    gattatttccttcctccttc 37
             ||||||||||||||||||||
Sbjct: 56041 gattatttccttcctccttc 56022
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>gb|AC146508.3| Pan troglodytes BAC clone RP43-172A15 from 7, complete sequence
          Length = 208067

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 22     atttccttcctccttcctgc 41
              ||||||||||||||||||||
Sbjct: 165106 atttccttcctccttcctgc 165125
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>gb|AC134576.3| Mus musculus BAC clone RP24-68G10 from chromosome 18, complete sequence
          Length = 249301

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 53    caccttgtgcttccaagttc 72
             ||||||||||||||||||||
Sbjct: 59502 caccttgtgcttccaagttc 59521
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>gb|AC115039.7| Mus musculus chromosome 6, clone RP24-279C2, complete sequence
          Length = 195362

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 20     ttatttccttcctccttcct 39
              ||||||||||||||||||||
Sbjct: 166129 ttatttccttcctccttcct 166148
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>gb|AC004743.1| Homo sapiens PAC clone RP4-807C15 from 7, complete sequence
          Length = 117752

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 22    atttccttcctccttcctgc 41
             ||||||||||||||||||||
Sbjct: 69473 atttccttcctccttcctgc 69492
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>ref|XM_536814.2| PREDICTED: Canis familiaris similar to RGD, leucine-rich repeat,
            tropomodulin and proline-rich containing protein
            (LOC479683), mRNA
          Length = 4128

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 279  ggcctgcgcctcgtccagcaggcc 302
            |||||||||| |||||||||||||
Sbjct: 1788 ggcctgcgccacgtccagcaggcc 1765
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>emb|AL939110.1|SCO939110 Streptomyces coelicolor A3(2) complete genome; segment 7/29
          Length = 283100

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 279   ggcctgcgcctcgtccagca 298
             ||||||||||||||||||||
Sbjct: 65854 ggcctgcgcctcgtccagca 65873
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>emb|AL590626.9| Mouse DNA sequence from clone RP23-143O13 on chromosome 13 Contains the
              3' end of a novel gene and a CpG island, complete sequence
          Length = 179282

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 73     ggatatttacaagcagtaca 92
              ||||||||||||||||||||
Sbjct: 114839 ggatatttacaagcagtaca 114858
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>gb|AE012112.1| Xanthomonas campestris pv. campestris str. ATCC 33913,  section 20 of
            460 of the complete genome
          Length = 12215

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 286  gcctcgtccagcaggccatc 305
            ||||||||||||||||||||
Sbjct: 9941 gcctcgtccagcaggccatc 9922
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>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome
          Length = 5148708

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 286    gcctcgtccagcaggccatc 305
              ||||||||||||||||||||
Sbjct: 219396 gcctcgtccagcaggccatc 219377
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>gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome
          Length = 5751492

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 227     ccctgacttccacatgctgc 246
               ||||||||||||||||||||
Sbjct: 1036218 ccctgacttccacatgctgc 1036237
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 25       tccttcctccttcctgctca 44
                ||||||||||||||||||||
Sbjct: 14789816 tccttcctccttcctgctca 14789835
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>gb|AC154549.2| Mus musculus BAC clone RP23-443L15 from chromosome 17, complete
             sequence
          Length = 191523

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 217   actccaacagccctgacttc 236
             ||||||||||||||||||||
Sbjct: 86722 actccaacagccctgacttc 86703
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>gb|AC008736.6|AC008736 Homo sapiens chromosome 19 clone CTD-2538C1, complete sequence
          Length = 191925

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 317   gagatgcagacagcgcacca 336
             ||||||||||||||||||||
Sbjct: 64974 gagatgcagacagcgcacca 64993
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>dbj|BA000011.4| Thermoplasma volcanium GSS1 DNA, complete genome
          Length = 1584804

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 83     aagcagtacaccatatttac 102
              ||||||||||||||||||||
Sbjct: 876701 aagcagtacaccatatttac 876720
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>dbj|AP003021.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0503E05
          Length = 168258

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 25    tccttcctccttcctgctca 44
             ||||||||||||||||||||
Sbjct: 25860 tccttcctccttcctgctca 25879
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>gb|AC154676.2| Mus musculus BAC clone RP23-146O19 from 17, complete sequence
          Length = 180352

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 217   actccaacagccctgacttc 236
             ||||||||||||||||||||
Sbjct: 18368 actccaacagccctgacttc 18349
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>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome
          Length = 3551823

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 279     ggcctgcgcctcgtccagca 298
               ||||||||||||||||||||
Sbjct: 3194557 ggcctgcgcctcgtccagca 3194576
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>gb|AC133955.4| Mus musculus BAC clone RP23-249M4 from 6, complete sequence
          Length = 185272

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 20     ttatttccttcctccttcct 39
              ||||||||||||||||||||
Sbjct: 158916 ttatttccttcctccttcct 158897
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>emb|AM114763.1| Platynereis dumerilii mRNA for crooked neck protein (crn gene)
          Length = 2340

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 77  atttacaagcagtacaccat 96
           ||||||||||||||||||||
Sbjct: 865 atttacaagcagtacaccat 884
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>emb|AL670256.6| Mouse DNA sequence from clone RP23-300H22 on chromosome 4, complete
             sequence
          Length = 237318

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 18    gattatttccttcctccttc 37
             ||||||||||||||||||||
Sbjct: 19863 gattatttccttcctccttc 19882


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,084,565
Number of Sequences: 3902068
Number of extensions: 4084565
Number of successful extensions: 83174
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 82732
Number of HSP's gapped (non-prelim): 442
length of query: 608
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 585
effective length of database: 17,143,297,704
effective search space: 10028829156840
effective search space used: 10028829156840
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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