ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd20d01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AJ566110.1|PMU566110 Pasteurella multocida ORF1 (partial), O... 50 0.010
2dbj|BA000016.3| Clostridium perfringens str. 13 DNA, complete ge... 46 0.15
3dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.59
4gb|AF229199.1|AF229199 Oryza sativa chromosome 1 clone OSJNBa004... 44 0.59
5dbj|AP003346.4| Oryza sativa (japonica cultivar-group) genomic D... 44 0.59
6dbj|AP003431.2| Oryza sativa (japonica cultivar-group) genomic D... 44 0.59
7gb|AF110403.1| Bactrocera tryoni transposon Homer putative trans... 42 2.3
8emb|AL844204.3| Mouse DNA sequence from clone RP23-189N15 on chr... 42 2.3
9gb|AC125018.15| Mus musculus chromosome 7, clone RP24-158A20, co... 40 9.2
10gb|AC111050.9| Mus musculus chromosome 3, clone RP24-66H10, comp... 40 9.2
11gb|AC115736.11| Mus musculus chromosome 3, clone RP23-473D1, com... 40 9.2
12gb|AC135082.4| Mus musculus BAC clone RP24-222O22 from chromosom... 40 9.2
13gb|BC087060.1| Rattus norvegicus Tp53rk binding protein, mRNA (c... 40 9.2
14gb|AC124347.4| Mus musculus BAC clone RP24-462J14 from chromosom... 40 9.2
15emb|AL583825.8| Human DNA sequence from clone RP11-362H12 on chr... 40 9.2
16emb|AL032822.1|HS59B16 Human DNA sequence from clone RP1-59B16 o... 40 9.2
17gb|AY325910.1| Homo sapiens hydroxysteroid (17-beta) dehydrogena... 40 9.2
18emb|AL669849.19| Mouse DNA sequence from clone RP23-341O22 on ch... 40 9.2
19emb|BX649352.15| Zebrafish DNA sequence from clone DKEY-196J7 in... 40 9.2
20emb|BX950174.16| Zebrafish DNA sequence from clone DKEY-219G5 in... 40 9.2
21gb|AC105389.3| Homo sapiens BAC clone RP11-227F19 from 4, comple... 40 9.2
22gb|AY972619.1| Hordeum vulgare subsp. vulgare cultivar Morex sub... 40 9.2
23emb|BX321921.11| Zebrafish DNA sequence from clone DKEYP-114B5 i... 40 9.2
24gb|AC034206.4| Homo sapiens chromosome 5 clone CTC-321K16, compl... 40 9.2
25dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.2
26gb|AC009140.6|AC009140 Homo sapiens chromosome 16 clone RP11-53K... 40 9.2
27gb|AC092142.5| Homo sapiens chromosome 16 clone RP11-510J16, com... 40 9.2
28gb|AC138304.1| Homo sapiens chromosome 16 clone CTD-2588J6, comp... 40 9.2
29gb|AC154252.1| Mus musculus BAC clone RP24-197M20 from chromosom... 40 9.2
30dbj|AK103275.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 9.2
31dbj|AK066962.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 9.2
32emb|BX005150.5| Zebrafish DNA sequence from clone CH211-105J21 i... 40 9.2
33gb|AC005738.1|AC005738 Homo sapiens chromosome 5, BAC clone 7g12... 40 9.2
34gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 9.2
35emb|AL844497.4|CNS08CAU Oryza sativa chromosome 12, . BAC OSJNBa... 40 9.2
36emb|CT025536.8| Mouse DNA sequence from clone RP24-97G22 on chro... 40 9.2
37emb|CT030192.6| M.truncatula DNA sequence from clone MTH2-16D16 ... 40 9.2
38gb|AE014295.3| Bifidobacterium longum NCC2705, complete genome 40 9.2
39gb|AY437838.1| Halomonas elongata TrkA (trkA) and TrkH (trkH) ge... 40 9.2
40gb|J04594.1|NEUTRP3A N.crassa tryptophan synthetase (trp3) alpha... 40 9.2 
>emb|AJ566110.1|PMU566110 Pasteurella multocida ORF1 (partial), ORF2, ORF3, ORF4, toxA gene,
            ORF5, ORF6, ORF7, ORF8, ORF9, ORF10, ORF11 and ORF12
            (partial)
          Length = 18824

 Score = 50.1 bits (25), Expect = 0.010
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                     
Query: 394  atttcctctctcatttcttctttaa 418
            |||||||||||||||||||||||||
Sbjct: 9026 atttcctctctcatttcttctttaa 9050
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>dbj|BA000016.3| Clostridium perfringens str. 13 DNA, complete genome
          Length = 3031430

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                      
Query: 406     atttcttctttaagttcttctct 428
               |||||||||||||||||||||||
Sbjct: 1158573 atttcttctttaagttcttctct 1158551
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 394      atttcctctctcatttcttctt 415
                ||||||||||||||||||||||
Sbjct: 38543293 atttcctctctcatttcttctt 38543272
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>gb|AF229199.1|AF229199 Oryza sativa chromosome 1 clone OSJNBa0048I01, complete sequence
          Length = 193444

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 394    atttcctctctcatttcttctt 415
              ||||||||||||||||||||||
Sbjct: 136379 atttcctctctcatttcttctt 136358
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>dbj|AP003346.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0434C04
          Length = 150064

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 394   atttcctctctcatttcttctt 415
             ||||||||||||||||||||||
Sbjct: 63974 atttcctctctcatttcttctt 63953
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>dbj|AP003431.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
            clone:B1099D03
          Length = 191022

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 394  atttcctctctcatttcttctt 415
            ||||||||||||||||||||||
Sbjct: 1266 atttcctctctcatttcttctt 1245
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>gb|AF110403.1| Bactrocera tryoni transposon Homer putative transposase gene,
           complete cds
          Length = 3789

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 406 atttcttctttaagttcttct 426
           |||||||||||||||||||||
Sbjct: 842 atttcttctttaagttcttct 822
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>emb|AL844204.3| Mouse DNA sequence from clone RP23-189N15 on chromosome 2, complete
             sequence
          Length = 162981

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 396   ttcctctctcatttcttcttt 416
             |||||||||||||||||||||
Sbjct: 11650 ttcctctctcatttcttcttt 11630
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>gb|AC125018.15| Mus musculus chromosome 7, clone RP24-158A20, complete sequence
          Length = 162317

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 393   gatttcctctctcatttcttcttt 416
             |||||||| |||||||||||||||
Sbjct: 90993 gatttcctttctcatttcttcttt 91016
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>gb|AC111050.9| Mus musculus chromosome 3, clone RP24-66H10, complete sequence
          Length = 230651

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 407   tttcttctttaagttcttct 426
             ||||||||||||||||||||
Sbjct: 93900 tttcttctttaagttcttct 93919
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>gb|AC115736.11| Mus musculus chromosome 3, clone RP23-473D1, complete sequence
          Length = 180545

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 407    tttcttctttaagttcttct 426
              ||||||||||||||||||||
Sbjct: 179082 tttcttctttaagttcttct 179101
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>gb|AC135082.4| Mus musculus BAC clone RP24-222O22 from chromosome 7, complete sequence
          Length = 183170

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 407   tttcttctttaagttcttct 426
             ||||||||||||||||||||
Sbjct: 71541 tttcttctttaagttcttct 71560
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>gb|BC087060.1| Rattus norvegicus Tp53rk binding protein, mRNA (cDNA clone
           MGC:94108 IMAGE:7125830), complete cds
          Length = 1388

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 622 cttgccgaggactccgactcctgg 645
           |||||||||||||| |||||||||
Sbjct: 830 cttgccgaggactctgactcctgg 853
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>gb|AC124347.4| Mus musculus BAC clone RP24-462J14 from chromosome 19, complete
             sequence
          Length = 179915

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 342   gggccacatttccatgactt 361
             ||||||||||||||||||||
Sbjct: 40637 gggccacatttccatgactt 40656
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>emb|AL583825.8| Human DNA sequence from clone RP11-362H12 on chromosome 1 Contains a
             mitochondrial intermediate peptidase (MIPEP) pseudogene
             and a CpG island, complete sequence
          Length = 198794

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 393   gatttcctctctcatttctt 412
             ||||||||||||||||||||
Sbjct: 53642 gatttcctctctcatttctt 53661
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>emb|AL032822.1|HS59B16 Human DNA sequence from clone RP1-59B16 on chromosome 6p22.1-22.3
             Contains an exonuclease FLJ12671 pseudogene, complete
             sequence
          Length = 99902

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 34    tagcagcctatgtaacatggcagt 57
             ||||||||| ||||||||||||||
Sbjct: 83454 tagcagcctttgtaacatggcagt 83477
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>gb|AY325910.1| Homo sapiens hydroxysteroid (17-beta) dehydrogenase 2 (HSD17B2) gene,
             complete cds
          Length = 67249

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 405   catttcttctttaagttcttctct 428
             |||| |||||||||||||||||||
Sbjct: 49947 cattacttctttaagttcttctct 49970
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>emb|AL669849.19| Mouse DNA sequence from clone RP23-341O22 on chromosome 11 Contains part
              of the Dock2 gene for dedicator of cyto-kinesis 2, complete
              sequence
          Length = 148320

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 22     aacaatgagccctagcagcctatg 45
              |||||||||| |||||||||||||
Sbjct: 107173 aacaatgagctctagcagcctatg 107196
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>emb|BX649352.15| Zebrafish DNA sequence from clone DKEY-196J7 in linkage group 1,
             complete sequence
          Length = 226763

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 407   tttcttctttaagttcttct 426
             ||||||||||||||||||||
Sbjct: 41798 tttcttctttaagttcttct 41779
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>emb|BX950174.16| Zebrafish DNA sequence from clone DKEY-219G5 in linkage group 6, complete
              sequence
          Length = 170278

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 198    gaaacagacagagtggctgc 217
              ||||||||||||||||||||
Sbjct: 164736 gaaacagacagagtggctgc 164755
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>gb|AC105389.3| Homo sapiens BAC clone RP11-227F19 from 4, complete sequence
          Length = 187067

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 1     acaaaagattaacacaaaca 20
             ||||||||||||||||||||
Sbjct: 62902 acaaaagattaacacaaaca 62921
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>gb|AY972619.1| Hordeum vulgare subsp. vulgare cultivar Morex subclone NRG098 cyclic
            nucleotide-gated ion channel 4 (Nec1) gene, complete cds
          Length = 9090

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 49   catggcagtattccacagag 68
            ||||||||||||||||||||
Sbjct: 4410 catggcagtattccacagag 4391
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>emb|BX321921.11| Zebrafish DNA sequence from clone DKEYP-114B5 in linkage group 16,
              complete sequence
          Length = 134141

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 463    ctcgctctccttctctgcct 482
              ||||||||||||||||||||
Sbjct: 116309 ctcgctctccttctctgcct 116290
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>gb|AC034206.4| Homo sapiens chromosome 5 clone CTC-321K16, complete sequence
          Length = 108123

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 617   cccaccttgccgaggactcc 636
             ||||||||||||||||||||
Sbjct: 10072 cccaccttgccgaggactcc 10053
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 463      ctcgctctccttctctgcct 482
                ||||||||||||||||||||
Sbjct: 21527939 ctcgctctccttctctgcct 21527958
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>gb|AC009140.6|AC009140 Homo sapiens chromosome 16 clone RP11-53K15, complete sequence
          Length = 139173

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 405   catttcttctttaagttcttctct 428
             |||| |||||||||||||||||||
Sbjct: 12444 cattacttctttaagttcttctct 12467
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>gb|AC092142.5| Homo sapiens chromosome 16 clone RP11-510J16, complete sequence
          Length = 177306

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 405   catttcttctttaagttcttctct 428
             |||| |||||||||||||||||||
Sbjct: 15558 cattacttctttaagttcttctct 15535
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>gb|AC138304.1| Homo sapiens chromosome 16 clone CTD-2588J6, complete sequence
          Length = 183002

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 405    catttcttctttaagttcttctct 428
              |||| |||||||||||||||||||
Sbjct: 148185 cattacttctttaagttcttctct 148162
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>gb|AC154252.1| Mus musculus BAC clone RP24-197M20 from chromosome 13, complete sequence
          Length = 176702

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 407    tttcttctttaagttcttct 426
              ||||||||||||||||||||
Sbjct: 130687 tttcttctttaagttcttct 130668
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>dbj|AK103275.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033124K10, full
            insert sequence
          Length = 1437

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 463  ctcgctctccttctctgcct 482
            ||||||||||||||||||||
Sbjct: 1134 ctcgctctccttctctgcct 1115
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>dbj|AK066962.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013091G19, full
            insert sequence
          Length = 3099

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 463  ctcgctctccttctctgcct 482
            ||||||||||||||||||||
Sbjct: 2758 ctcgctctccttctctgcct 2739
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>emb|BX005150.5| Zebrafish DNA sequence from clone CH211-105J21 in linkage group 6,
             complete sequence
          Length = 167946

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 198   gaaacagacagagtggctgc 217
             ||||||||||||||||||||
Sbjct: 12400 gaaacagacagagtggctgc 12381
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>gb|AC005738.1|AC005738 Homo sapiens chromosome 5, BAC clone 7g12 (LBNL H126), complete sequence
          Length = 134506

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 617    cccaccttgccgaggactcc 636
              ||||||||||||||||||||
Sbjct: 103617 cccaccttgccgaggactcc 103598
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 463      ctcgctctccttctctgcct 482
                ||||||||||||||||||||
Sbjct: 21456260 ctcgctctccttctctgcct 21456279
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>emb|AL844497.4|CNS08CAU Oryza sativa chromosome 12, . BAC OSJNBa0085B23 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 158019

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 463    ctcgctctccttctctgcct 482
              ||||||||||||||||||||
Sbjct: 117950 ctcgctctccttctctgcct 117931
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>emb|CT025536.8| Mouse DNA sequence from clone RP24-97G22 on chromosome 14, complete
              sequence
          Length = 207864

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 404    tcatttcttctttaagttct 423
              ||||||||||||||||||||
Sbjct: 134151 tcatttcttctttaagttct 134132
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>emb|CT030192.6| M.truncatula DNA sequence from clone MTH2-16D16 on chromosome 3,
             complete sequence
          Length = 112216

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 80    gatgaaaatccaaacttgca 99
             ||||||||||||||||||||
Sbjct: 38680 gatgaaaatccaaacttgca 38661
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>gb|AE014295.3| Bifidobacterium longum NCC2705, complete genome
          Length = 2256640

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 487     agctcgcggtcttcgggata 506
               ||||||||||||||||||||
Sbjct: 1495451 agctcgcggtcttcgggata 1495432
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>gb|AY437838.1| Halomonas elongata TrkA (trkA) and TrkH (trkH) genes, complete cds
          Length = 2866

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 284  acggtggtggtgctgtttgccccg 307
            |||||||||||||||||| |||||
Sbjct: 2825 acggtggtggtgctgtttaccccg 2848
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>gb|J04594.1|NEUTRP3A N.crassa tryptophan synthetase (trp3) alpha-2 subunit gene, complete
            cds
          Length = 3592

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 464  tcgctctccttctctgcctt 483
            ||||||||||||||||||||
Sbjct: 3535 tcgctctccttctctgcctt 3554


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,206,047
Number of Sequences: 3902068
Number of extensions: 6206047
Number of successful extensions: 125138
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 124901
Number of HSP's gapped (non-prelim): 237
length of query: 673
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 650
effective length of database: 17,143,297,704
effective search space: 11143143507600
effective search space used: 11143143507600
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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