ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd20c23
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY107932.1| Zea mays PCO078506 mRNA sequence 371 2e-99
2dbj|AK106188.1| Oryza sativa (japonica cultivar-group) cDNA clon... 349 6e-93
3dbj|AK104453.1| Oryza sativa (japonica cultivar-group) cDNA clon... 349 6e-93
4dbj|AK099185.1| Oryza sativa (japonica cultivar-group) cDNA clon... 349 6e-93
5dbj|AK060020.1| Oryza sativa (japonica cultivar-group) cDNA clon... 349 6e-93
6dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 281 1e-72
7dbj|AP006531.3| Oryza sativa (japonica cultivar-group) genomic D... 281 1e-72
8dbj|AP006839.2| Oryza sativa (japonica cultivar-group) genomic D... 281 1e-72
9emb|AJ620335.1| Oryza sativa (indica cultivar-group) mRNA for E3... 48 0.030
10emb|AJ867287.1| Oryza sativa (indica cultivar-group) mRNA for ub... 48 0.030
11ref|NM_102289.3| Arabidopsis thaliana ubiquitin-protein ligase/ ... 44 0.47
12gb|BT000927.1| Arabidopsis thaliana clone C105129 unknown protei... 44 0.47
13gb|AY080767.1| Arabidopsis thaliana At1g24440 mRNA sequence 44 0.47
14emb|BX813355.1|CNS0ACCH Arabidopsis thaliana Full-length cDNA Co... 44 0.47
15emb|BX816924.1|CNS0ABVB Arabidopsis thaliana Full-length cDNA Co... 44 0.47
16gb|AY085533.1| Arabidopsis thaliana clone 156298 mRNA, complete ... 44 0.47
17gb|AC000103.2|AC000103 Genomic sequence for Arabidopsis thaliana... 44 0.47
18gb|AC118928.13| Mus musculus chromosome 16, clone RP23-416J10, c... 42 1.9
19emb|BX572601.1| Rhodopseudomonas palustris CGA009 complete genom... 42 1.9
20gb|AC154606.2| Mus musculus BAC clone RP23-252E10 from chromosom... 42 1.9
21gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete g... 42 1.9
22emb|AL844889.5| Mouse DNA sequence from clone RP23-35D6 on chrom... 42 1.9
23ref|XM_477429.1| Oryza sativa (japonica cultivar-group), mRNA 40 7.4
24gb|AC146937.2| Oryza sativa (japonica cultivar-group) chromosome... 40 7.4
25gb|AC148822.2| Oryza sativa (japonica cultivar-group) chromosome... 40 7.4
26gb|AC156620.10| Mus musculus chromosome 5, clone RP23-80G18, com... 40 7.4
27gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 7.4
28gb|AC126670.4| Mus musculus BAC clone RP24-469G14 from chromosom... 40 7.4
29emb|CT010495.9| Mouse DNA sequence from clone RP23-226G14 on chr... 40 7.4
30gb|AC122246.5| Mus musculus BAC clone RP23-152K13 from 1, comple... 40 7.4
31gb|BC043890.1| Xenopus laevis chondromodulin-I precursor, mRNA (... 40 7.4
32emb|CR956420.2| Pig DNA sequence from clone CH242-37G9 on chromo... 40 7.4
33gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome 40 7.4
34emb|AL445672.15| Human DNA sequence from clone RP11-66D1 on chro... 40 7.4
35emb|AL356503.18| Human DNA sequence from clone RP13-159A24 on ch... 40 7.4
36gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete ... 40 7.4
37emb|BX649606.1| Aspergillus fumigatus BAC pilot project supercon... 40 7.4
38emb|BX640441.1| Bordetella bronchiseptica strain RB50, complete ... 40 7.4
39emb|BX640426.1| Bordetella parapertussis strain 12822, complete ... 40 7.4
40emb|BX640419.1| Bordetella pertussis strain Tohama I, complete g... 40 7.4
41emb|AL939126.1|SCO939126 Streptomyces coelicolor A3(2) complete ... 40 7.4
42gb|AC113029.23| Mus musculus chromosome 5, clone RP23-206J17, co... 40 7.4
43gb|AC118675.2| Genomic sequence for Oryza sativa, Nipponbare str... 40 7.4
44gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hilde... 40 7.4
45dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.4
46dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.4
47dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.4
48ref|XM_577795.1| PREDICTED: Rattus norvegicus similar to LRRGT00... 40 7.4
49dbj|AP005475.4| Oryza sativa (japonica cultivar-group) genomic D... 40 7.4
50dbj|AP005673.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.4
51gb|AC154423.2| Mus musculus BAC clone RP24-221B7 from 17, comple... 40 7.4
52emb|CT806423.2| Pan troglodytes chromosome X clone CH251-25B01 m... 40 7.4
53gb|AC107776.12| Mus musculus chromosome 17, clone RP23-92G2, com... 40 7.4
54emb|CR956387.14| Pig DNA sequence from clone CH242-148I13 on chr... 40 7.4
55gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 7.4 
>gb|AY107932.1| Zea mays PCO078506 mRNA sequence
          Length = 920

 Score =  371 bits (187), Expect = 2e-99
 Identities = 244/263 (92%)
 Strand = Plus / Minus

                                                                       
Query: 281 gctagactaggtagtcatagtagaccagcaggaggttgtcggggacgatgaggggcaggc 340
           |||||||||||||||| |||||||||||||| | ||||||||||||||| ||||||||||
Sbjct: 539 gctagactaggtagtcgtagtagaccagcagcatgttgtcggggacgatcaggggcaggc 480

                                                                       
Query: 341 tgtcgatgaagctgtggaagtgcctcacgttctccttctccagggtcacggggtcgatca 400
           |||||||||||||| |||||||| ||||||||||||||||||| ||||| | ||||||||
Sbjct: 479 tgtcgatgaagctgaggaagtgcttcacgttctccttctccagcgtcaccgtgtcgatca 420

                                                                       
Query: 401 cgtcgtcgtcgccggtgagcacccacaggtccctggactggactctcttcaggcttccgc 460
           ||||||||||||||||||||||||||||||| |||||| |||| ||||||||||| ||||
Sbjct: 419 cgtcgtcgtcgccggtgagcacccacaggtctctggaccggaccctcttcaggctcccgc 360

                                                                       
Query: 461 ggcagaaagggcacgactgagaccttgtgtaccaatctcggtaacagttgatgcacatgg 520
           ||||||| ||||| ||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct: 359 ggcagaacgggcatgactgggaccttgtgtaccagtctcggtaacagttgatgcacatgg 300

                                  
Query: 521 catggttgcagttgggaaggacc 543
           |||||||||| || |||||||||
Sbjct: 299 catggttgcaattcggaaggacc 277



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 41/45 (91%), Gaps = 2/45 (4%)
 Strand = Plus / Minus

                                                        
Query: 178 cggcttcgctt-gccagactcgatctgcggaggatggtcggctgc 221
           ||||||||||| |||| |||||||| || ||||||||||||||||
Sbjct: 674 cggcttcgctttgcca-actcgatccgcagaggatggtcggctgc 631
to top
>dbj|AK106188.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-208-D10, full
           insert sequence
          Length = 1173

 Score =  349 bits (176), Expect = 6e-93
 Identities = 239/260 (91%)
 Strand = Plus / Minus

                                                                       
Query: 284 agactaggtagtcatagtagaccagcaggaggttgtcggggacgatgaggggcaggctgt 343
           ||||||||||||| ||||| ||||||| ||||||||| ||||| ||||||||||||||||
Sbjct: 951 agactaggtagtcgtagtacaccagcaagaggttgtcagggactatgaggggcaggctgt 892

                                                                       
Query: 344 cgatgaagctgtggaagtgcctcacgttctccttctccagggtcacggggtcgatcacgt 403
           ||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||
Sbjct: 891 cgatgaagctgtggaagtgcctcacattctccttctccagcgtcacggtgtcgatcacgt 832

                                                                       
Query: 404 cgtcgtcgccggtgagcacccacaggtccctggactggactctcttcaggcttccgcggc 463
           ||||||| |||||||||||||| |||||||| ||  |||||||||||||||| |||||||
Sbjct: 831 cgtcgtctccggtgagcacccagaggtcccttgatcggactctcttcaggctcccgcggc 772

                                                                       
Query: 464 agaaagggcacgactgagaccttgtgtaccaatctcggtaacagttgatgcacatggcat 523
           |||| ||||| |||||||| ||||||||||| ||||| ||||||||||||||||||||||
Sbjct: 771 agaacgggcatgactgagatcttgtgtaccagtctcgataacagttgatgcacatggcat 712

                               
Query: 524 ggttgcagttgggaaggacc 543
           ||||||| || |||||||||
Sbjct: 711 ggttgcaatttggaaggacc 692



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                     
Query: 182  ttcgcttgccagactcgatctgcggaggatggtcggctgcc 222
            |||||| ||||||||| |||||| |||||||||||||||||
Sbjct: 1053 ttcgctagccagactcaatctgcagaggatggtcggctgcc 1013
to top
>dbj|AK104453.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-212-H10, full
           insert sequence
          Length = 1290

 Score =  349 bits (176), Expect = 6e-93
 Identities = 239/260 (91%)
 Strand = Plus / Minus

                                                                       
Query: 284 agactaggtagtcatagtagaccagcaggaggttgtcggggacgatgaggggcaggctgt 343
           ||||||||||||| ||||| ||||||| ||||||||| ||||| ||||||||||||||||
Sbjct: 951 agactaggtagtcgtagtacaccagcaagaggttgtcagggactatgaggggcaggctgt 892

                                                                       
Query: 344 cgatgaagctgtggaagtgcctcacgttctccttctccagggtcacggggtcgatcacgt 403
           ||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||
Sbjct: 891 cgatgaagctgtggaagtgcctcacattctccttctccagcgtcacggtgtcgatcacgt 832

                                                                       
Query: 404 cgtcgtcgccggtgagcacccacaggtccctggactggactctcttcaggcttccgcggc 463
           ||||||| |||||||||||||| |||||||| ||  |||||||||||||||| |||||||
Sbjct: 831 cgtcgtctccggtgagcacccagaggtcccttgatcggactctcttcaggctcccgcggc 772

                                                                       
Query: 464 agaaagggcacgactgagaccttgtgtaccaatctcggtaacagttgatgcacatggcat 523
           |||| ||||| |||||||| ||||||||||| ||||| ||||||||||||||||||||||
Sbjct: 771 agaacgggcatgactgagatcttgtgtaccagtctcgataacagttgatgcacatggcat 712

                               
Query: 524 ggttgcagttgggaaggacc 543
           ||||||| || |||||||||
Sbjct: 711 ggttgcaatttggaaggacc 692



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                     
Query: 182  ttcgcttgccagactcgatctgcggaggatggtcggctgcc 222
            |||||| ||||||||| |||||| |||||||||||||||||
Sbjct: 1053 ttcgctagccagactcaatctgcagaggatggtcggctgcc 1013
to top
>dbj|AK099185.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023105K15, full
           insert sequence
          Length = 1291

 Score =  349 bits (176), Expect = 6e-93
 Identities = 239/260 (91%)
 Strand = Plus / Minus

                                                                       
Query: 284 agactaggtagtcatagtagaccagcaggaggttgtcggggacgatgaggggcaggctgt 343
           ||||||||||||| ||||| ||||||| ||||||||| ||||| ||||||||||||||||
Sbjct: 952 agactaggtagtcgtagtacaccagcaagaggttgtcagggactatgaggggcaggctgt 893

                                                                       
Query: 344 cgatgaagctgtggaagtgcctcacgttctccttctccagggtcacggggtcgatcacgt 403
           ||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||
Sbjct: 892 cgatgaagctgtggaagtgcctcacattctccttctccagcgtcacggtgtcgatcacgt 833

                                                                       
Query: 404 cgtcgtcgccggtgagcacccacaggtccctggactggactctcttcaggcttccgcggc 463
           ||||||| |||||||||||||| |||||||| ||  |||||||||||||||| |||||||
Sbjct: 832 cgtcgtctccggtgagcacccagaggtcccttgatcggactctcttcaggctcccgcggc 773

                                                                       
Query: 464 agaaagggcacgactgagaccttgtgtaccaatctcggtaacagttgatgcacatggcat 523
           |||| ||||| |||||||| ||||||||||| ||||| ||||||||||||||||||||||
Sbjct: 772 agaacgggcatgactgagatcttgtgtaccagtctcgataacagttgatgcacatggcat 713

                               
Query: 524 ggttgcagttgggaaggacc 543
           ||||||| || |||||||||
Sbjct: 712 ggttgcaatttggaaggacc 693



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                     
Query: 182  ttcgcttgccagactcgatctgcggaggatggtcggctgcc 222
            |||||| ||||||||| |||||| |||||||||||||||||
Sbjct: 1054 ttcgctagccagactcaatctgcagaggatggtcggctgcc 1014
to top
>dbj|AK060020.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-302-G11, full
           insert sequence
          Length = 1296

 Score =  349 bits (176), Expect = 6e-93
 Identities = 239/260 (91%)
 Strand = Plus / Minus

                                                                       
Query: 284 agactaggtagtcatagtagaccagcaggaggttgtcggggacgatgaggggcaggctgt 343
           ||||||||||||| ||||| ||||||| ||||||||| ||||| ||||||||||||||||
Sbjct: 951 agactaggtagtcgtagtacaccagcaagaggttgtcagggactatgaggggcaggctgt 892

                                                                       
Query: 344 cgatgaagctgtggaagtgcctcacgttctccttctccagggtcacggggtcgatcacgt 403
           ||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||
Sbjct: 891 cgatgaagctgtggaagtgcctcacattctccttctccagcgtcacggtgtcgatcacgt 832

                                                                       
Query: 404 cgtcgtcgccggtgagcacccacaggtccctggactggactctcttcaggcttccgcggc 463
           ||||||| |||||||||||||| |||||||| ||  |||||||||||||||| |||||||
Sbjct: 831 cgtcgtctccggtgagcacccagaggtcccttgatcggactctcttcaggctcccgcggc 772

                                                                       
Query: 464 agaaagggcacgactgagaccttgtgtaccaatctcggtaacagttgatgcacatggcat 523
           |||| ||||| |||||||| ||||||||||| ||||| ||||||||||||||||||||||
Sbjct: 771 agaacgggcatgactgagatcttgtgtaccagtctcgataacagttgatgcacatggcat 712

                               
Query: 524 ggttgcagttgggaaggacc 543
           ||||||| || |||||||||
Sbjct: 711 ggttgcaatttggaaggacc 692



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                     
Query: 182  ttcgcttgccagactcgatctgcggaggatggtcggctgcc 222
            |||||| ||||||||| |||||| |||||||||||||||||
Sbjct: 1053 ttcgctagccagactcaatctgcagaggatggtcggctgcc 1013
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  281 bits (142), Expect = 1e-72
 Identities = 193/210 (91%)
 Strand = Plus / Minus

                                                                            
Query: 284      agactaggtagtcatagtagaccagcaggaggttgtcggggacgatgaggggcaggctgt 343
                ||||||||||||| ||||| ||||||| ||||||||| ||||| ||||||||||||||||
Sbjct: 39425338 agactaggtagtcgtagtacaccagcaagaggttgtcagggactatgaggggcaggctgt 39425279

                                                                            
Query: 344      cgatgaagctgtggaagtgcctcacgttctccttctccagggtcacggggtcgatcacgt 403
                ||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||
Sbjct: 39425278 cgatgaagctgtggaagtgcctcacattctccttctccagcgtcacggtgtcgatcacgt 39425219

                                                                            
Query: 404      cgtcgtcgccggtgagcacccacaggtccctggactggactctcttcaggcttccgcggc 463
                ||||||| |||||||||||||| |||||||| ||  |||||||||||||||| |||||||
Sbjct: 39425218 cgtcgtctccggtgagcacccagaggtcccttgatcggactctcttcaggctcccgcggc 39425159

                                              
Query: 464      agaaagggcacgactgagaccttgtgtacc 493
                |||| ||||| |||||||| ||||||||||
Sbjct: 39425158 agaacgggcatgactgagatcttgtgtacc 39425129



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 50/54 (92%)
 Strand = Plus / Minus

                                                                      
Query: 490      taccaatctcggtaacagttgatgcacatggcatggttgcagttgggaaggacc 543
                ||||| ||||| ||||||||||||||||||||||||||||| || |||||||||
Sbjct: 39423490 taccagtctcgataacagttgatgcacatggcatggttgcaatttggaaggacc 39423437



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                         
Query: 182      ttcgcttgccagactcgatctgcggaggatggtcggctgcc 222
                |||||| ||||||||| |||||| |||||||||||||||||
Sbjct: 39425440 ttcgctagccagactcaatctgcagaggatggtcggctgcc 39425400
to top
>dbj|AP006531.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
           BAC clone:B1417F08
          Length = 155536

 Score =  281 bits (142), Expect = 1e-72
 Identities = 193/210 (91%)
 Strand = Plus / Minus

                                                                       
Query: 284 agactaggtagtcatagtagaccagcaggaggttgtcggggacgatgaggggcaggctgt 343
           ||||||||||||| ||||| ||||||| ||||||||| ||||| ||||||||||||||||
Sbjct: 352 agactaggtagtcgtagtacaccagcaagaggttgtcagggactatgaggggcaggctgt 293

                                                                       
Query: 344 cgatgaagctgtggaagtgcctcacgttctccttctccagggtcacggggtcgatcacgt 403
           ||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||
Sbjct: 292 cgatgaagctgtggaagtgcctcacattctccttctccagcgtcacggtgtcgatcacgt 233

                                                                       
Query: 404 cgtcgtcgccggtgagcacccacaggtccctggactggactctcttcaggcttccgcggc 463
           ||||||| |||||||||||||| |||||||| ||  |||||||||||||||| |||||||
Sbjct: 232 cgtcgtctccggtgagcacccagaggtcccttgatcggactctcttcaggctcccgcggc 173

                                         
Query: 464 agaaagggcacgactgagaccttgtgtacc 493
           |||| ||||| |||||||| ||||||||||
Sbjct: 172 agaacgggcatgactgagatcttgtgtacc 143



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                    
Query: 182 ttcgcttgccagactcgatctgcggaggatggtcggctgcc 222
           |||||| ||||||||| |||||| |||||||||||||||||
Sbjct: 454 ttcgctagccagactcaatctgcagaggatggtcggctgcc 414
to top
>dbj|AP006839.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
             fosmid clone:OSJNOa108M02
          Length = 38208

 Score =  281 bits (142), Expect = 1e-72
 Identities = 193/210 (91%)
 Strand = Plus / Minus

                                                                         
Query: 284   agactaggtagtcatagtagaccagcaggaggttgtcggggacgatgaggggcaggctgt 343
             ||||||||||||| ||||| ||||||| ||||||||| ||||| ||||||||||||||||
Sbjct: 35862 agactaggtagtcgtagtacaccagcaagaggttgtcagggactatgaggggcaggctgt 35803

                                                                         
Query: 344   cgatgaagctgtggaagtgcctcacgttctccttctccagggtcacggggtcgatcacgt 403
             ||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||
Sbjct: 35802 cgatgaagctgtggaagtgcctcacattctccttctccagcgtcacggtgtcgatcacgt 35743

                                                                         
Query: 404   cgtcgtcgccggtgagcacccacaggtccctggactggactctcttcaggcttccgcggc 463
             ||||||| |||||||||||||| |||||||| ||  |||||||||||||||| |||||||
Sbjct: 35742 cgtcgtctccggtgagcacccagaggtcccttgatcggactctcttcaggctcccgcggc 35683

                                           
Query: 464   agaaagggcacgactgagaccttgtgtacc 493
             |||| ||||| |||||||| ||||||||||
Sbjct: 35682 agaacgggcatgactgagatcttgtgtacc 35653



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 50/54 (92%)
 Strand = Plus / Minus

                                                                   
Query: 490   taccaatctcggtaacagttgatgcacatggcatggttgcagttgggaaggacc 543
             ||||| ||||| ||||||||||||||||||||||||||||| || |||||||||
Sbjct: 34014 taccagtctcgataacagttgatgcacatggcatggttgcaatttggaaggacc 33961



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                      
Query: 182   ttcgcttgccagactcgatctgcggaggatggtcggctgcc 222
             |||||| ||||||||| |||||| |||||||||||||||||
Sbjct: 35964 ttcgctagccagactcaatctgcagaggatggtcggctgcc 35924
to top
>emb|AJ620335.1| Oryza sativa (indica cultivar-group) mRNA for E3 ubiquitin ligase
           (ubl gene)
          Length = 762

 Score = 48.1 bits (24), Expect = 0.030
 Identities = 54/64 (84%)
 Strand = Plus / Minus

                                                                       
Query: 415 gtgagcacccacaggtccctggactggactctcttcaggcttccgcggcagaaagggcac 474
           |||||||||||||||||||| ||  | | ||  || |||||||| |||||||||||||| 
Sbjct: 629 gtgagcacccacaggtcccttgagcgaattcgtttaaggcttcctcggcagaaagggcaa 570

               
Query: 475 gact 478
           ||||
Sbjct: 569 gact 566
to top
>emb|AJ867287.1| Oryza sativa (indica cultivar-group) mRNA for ubiquitin ligase E3
           (ubl gene)
          Length = 762

 Score = 48.1 bits (24), Expect = 0.030
 Identities = 54/64 (84%)
 Strand = Plus / Minus

                                                                       
Query: 415 gtgagcacccacaggtccctggactggactctcttcaggcttccgcggcagaaagggcac 474
           |||||||||||||||||||| ||  | | ||  || |||||||| |||||||||||||| 
Sbjct: 629 gtgagcacccacaggtcccttgagcgaattcgtttaaggcttcctcggcagaaagggcaa 570

               
Query: 475 gact 478
           ||||
Sbjct: 569 gact 566
to top
>ref|NM_102289.3| Arabidopsis thaliana ubiquitin-protein ligase/ zinc ion binding
           AT1G24440 mRNA, complete cds
          Length = 1264

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 499 cggtaacagttgatgcacatggcatg 524
           |||||||| |||||||||||||||||
Sbjct: 860 cggtaacatttgatgcacatggcatg 835
to top
>gb|BT000927.1| Arabidopsis thaliana clone C105129 unknown protein (At1g24440)
           mRNA, complete cds
          Length = 787

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 499 cggtaacagttgatgcacatggcatg 524
           |||||||| |||||||||||||||||
Sbjct: 539 cggtaacatttgatgcacatggcatg 514
to top
>gb|AY080767.1| Arabidopsis thaliana At1g24440 mRNA sequence
          Length = 1842

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 499  cggtaacagttgatgcacatggcatg 524
            |||||||| |||||||||||||||||
Sbjct: 1421 cggtaacatttgatgcacatggcatg 1396
to top
>emb|BX813355.1|CNS0ACCH Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTFB11ZF08 of Flowers and buds of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 1341

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 499  cggtaacagttgatgcacatggcatg 524
            |||||||| |||||||||||||||||
Sbjct: 1151 cggtaacatttgatgcacatggcatg 1126
to top
>emb|BX816924.1|CNS0ABVB Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH77ZB07 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1275

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 499 cggtaacagttgatgcacatggcatg 524
           |||||||| |||||||||||||||||
Sbjct: 955 cggtaacatttgatgcacatggcatg 930
to top
>gb|AY085533.1| Arabidopsis thaliana clone 156298 mRNA, complete sequence
          Length = 1179

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 499 cggtaacagttgatgcacatggcatg 524
           |||||||| |||||||||||||||||
Sbjct: 805 cggtaacatttgatgcacatggcatg 780
to top
>gb|AC000103.2|AC000103 Genomic sequence for Arabidopsis thaliana BAC F21J9 from chromosome I,
             complete sequence
          Length = 99392

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 499   cggtaacagttgatgcacatggcatg 524
             |||||||| |||||||||||||||||
Sbjct: 24387 cggtaacatttgatgcacatggcatg 24362
to top
>gb|AC118928.13| Mus musculus chromosome 16, clone RP23-416J10, complete sequence
          Length = 238516

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 81     cttcttcttctgtacacttat 101
              |||||||||||||||||||||
Sbjct: 188610 cttcttcttctgtacacttat 188630
to top
>emb|BX572601.1| Rhodopseudomonas palustris CGA009 complete genome; segment 9/16
          Length = 348580

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 394    tcgatcacgtcgtcgtcgccg 414
              |||||||||||||||||||||
Sbjct: 223026 tcgatcacgtcgtcgtcgccg 223006
to top
>gb|AC154606.2| Mus musculus BAC clone RP23-252E10 from chromosome 16, complete sequence
          Length = 181697

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 81     cttcttcttctgtacacttat 101
              |||||||||||||||||||||
Sbjct: 168860 cttcttcttctgtacacttat 168840
to top
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome
          Length = 2909809

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 391     gggtcgatcacgtcgtcgtcg 411
               |||||||||||||||||||||
Sbjct: 1343975 gggtcgatcacgtcgtcgtcg 1343995
to top
>emb|AL844889.5| Mouse DNA sequence from clone RP23-35D6 on chromosome 2, complete
             sequence
          Length = 112292

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 5     ttttaattatagcttggcaatttgc 29
             ||||||||||||||||| |||||||
Sbjct: 52595 ttttaattatagcttggtaatttgc 52571
to top
>ref|XM_477429.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1107

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 451 aggcttccgcggcagaaagggcacgact 478
           |||||||| |||||||||||||| ||||
Sbjct: 754 aggcttcctcggcagaaagggcaagact 727
to top
>gb|AC146937.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0004O15
              map near R3342S, complete sequence
          Length = 140142

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 1      tcttttttaattatagcttg 20
              ||||||||||||||||||||
Sbjct: 124488 tcttttttaattatagcttg 124469
to top
>gb|AC148822.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0036K13
              map near R3342S, complete sequence
          Length = 135684

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 1      tcttttttaattatagcttg 20
              ||||||||||||||||||||
Sbjct: 133612 tcttttttaattatagcttg 133631
to top
>gb|AC156620.10| Mus musculus chromosome 5, clone RP23-80G18, complete sequence
          Length = 248320

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 346    atgaagctgtggaagtgcct 365
              ||||||||||||||||||||
Sbjct: 222590 atgaagctgtggaagtgcct 222609
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 337      aggctgtcgatgaagctgtggaag 360
                |||||||||||| |||||||||||
Sbjct: 12900182 aggctgtcgatgtagctgtggaag 12900159
to top
>gb|AC126670.4| Mus musculus BAC clone RP24-469G14 from chromosome 1, complete sequence
          Length = 200595

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 416    tgagcacccacaggtccctg 435
              ||||||||||||||||||||
Sbjct: 168559 tgagcacccacaggtccctg 168540
to top
>emb|CT010495.9| Mouse DNA sequence from clone RP23-226G14 on chromosome 17, complete
              sequence
          Length = 202526

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 75     caaacacttcttcttctgtacacttatt 102
              ||||||||| ||||| ||||||||||||
Sbjct: 191651 caaacacttattcttatgtacacttatt 191678
to top
>gb|AC122246.5| Mus musculus BAC clone RP23-152K13 from 1, complete sequence
          Length = 203739

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 416   tgagcacccacaggtccctg 435
             ||||||||||||||||||||
Sbjct: 34929 tgagcacccacaggtccctg 34910
to top
>gb|BC043890.1| Xenopus laevis chondromodulin-I precursor, mRNA (cDNA clone
           MGC:53801 IMAGE:5542016), complete cds
          Length = 1434

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 344 cgatgaagctgtggaagtgc 363
           ||||||||||||||||||||
Sbjct: 351 cgatgaagctgtggaagtgc 370
to top
>emb|CR956420.2| Pig DNA sequence from clone CH242-37G9 on chromosome 17, complete
            sequence
          Length = 65276

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 45   aacaagtaaaaaccttcacc 64
            ||||||||||||||||||||
Sbjct: 5094 aacaagtaaaaaccttcacc 5075
to top
>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome
          Length = 4406967

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 389     cggggtcgatcacgtcgtcg 408
               ||||||||||||||||||||
Sbjct: 3549017 cggggtcgatcacgtcgtcg 3548998
to top
>emb|AL445672.15| Human DNA sequence from clone RP11-66D1 on chromosome 9, complete
             sequence
          Length = 113031

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 363   cctcacgttctccttctcca 382
             ||||||||||||||||||||
Sbjct: 77755 cctcacgttctccttctcca 77736
to top
>emb|AL356503.18| Human DNA sequence from clone RP13-159A24 on chromosome Xq27.1-28,
             complete sequence
          Length = 147043

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 124   aaagccagagcaacaaataa 143
             ||||||||||||||||||||
Sbjct: 12145 aaagccagagcaacaaataa 12126
to top
>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence
          Length = 2726152

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 392     ggtcgatcacgtcgtcgtcg 411
               ||||||||||||||||||||
Sbjct: 2378644 ggtcgatcacgtcgtcgtcg 2378625
to top
>emb|BX649606.1| Aspergillus fumigatus BAC pilot project supercontig; segment 2/3
          Length = 348551

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 519    ggcatggttgcagttgggaa 538
              ||||||||||||||||||||
Sbjct: 197130 ggcatggttgcagttgggaa 197111
to top
>emb|BX640441.1| Bordetella bronchiseptica strain RB50, complete genome; segment 5/16
          Length = 348624

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 333  gggcaggctgtcgatgaagc 352
            ||||||||||||||||||||
Sbjct: 3496 gggcaggctgtcgatgaagc 3515
to top
>emb|BX640426.1| Bordetella parapertussis strain 12822, complete genome; segment 4/14
          Length = 348866

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 333    gggcaggctgtcgatgaagc 352
              ||||||||||||||||||||
Sbjct: 116713 gggcaggctgtcgatgaagc 116732
to top
>emb|BX640419.1| Bordetella pertussis strain Tohama I, complete genome; segment 9/12
          Length = 349672

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 333    gggcaggctgtcgatgaagc 352
              ||||||||||||||||||||
Sbjct: 111837 gggcaggctgtcgatgaagc 111856
to top
>emb|AL939126.1|SCO939126 Streptomyces coelicolor A3(2) complete genome; segment 23/29
          Length = 295150

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 399   cacgtcgtcgtcgccggtgagcac 422
             ||||||||||| ||||||||||||
Sbjct: 27385 cacgtcgtcgtggccggtgagcac 27362
to top
>gb|AC113029.23| Mus musculus chromosome 5, clone RP23-206J17, complete sequence
          Length = 223809

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 346    atgaagctgtggaagtgcct 365
              ||||||||||||||||||||
Sbjct: 178302 atgaagctgtggaagtgcct 178283
to top
>gb|AC118675.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBb0094H06, from chromosome 3, complete sequence
          Length = 118075

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 337   aggctgtcgatgaagctgtggaag 360
             |||||||||||| |||||||||||
Sbjct: 39327 aggctgtcgatgtagctgtggaag 39350
to top
>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete
              genome
          Length = 3570858

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 401    cgtcgtcgtcgccggtgagc 420
              ||||||||||||||||||||
Sbjct: 446772 cgtcgtcgtcgccggtgagc 446791
to top
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 1        tcttttttaattatagcttg 20
                ||||||||||||||||||||
Sbjct: 27597485 tcttttttaattatagcttg 27597504
to top
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                            
Query: 451      aggcttccgcggcagaaagggcacgact 478
                |||||||| |||||||||||||| ||||
Sbjct: 10309699 aggcttcctcggcagaaagggcaagact 10309672
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 337      aggctgtcgatgaagctgtggaag 360
                |||||||||||| |||||||||||
Sbjct: 12896945 aggctgtcgatgtagctgtggaag 12896922
to top
>ref|XM_577795.1| PREDICTED: Rattus norvegicus similar to LRRGT00049 (LOC502330), mRNA
          Length = 4653

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 172  cggccccggcttcgcttgcc 191
            ||||||||||||||||||||
Sbjct: 4559 cggccccggcttcgcttgcc 4540
to top
>dbj|AP005475.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBa0091L05
          Length = 173983

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 451   aggcttccgcggcagaaagggcacgact 478
             |||||||| |||||||||||||| ||||
Sbjct: 20879 aggcttcctcggcagaaagggcaagact 20852
to top
>dbj|AP005673.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:B1029H08
          Length = 137050

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 451    aggcttccgcggcagaaagggcacgact 478
              |||||||| |||||||||||||| ||||
Sbjct: 131618 aggcttcctcggcagaaagggcaagact 131591
to top
>gb|AC154423.2| Mus musculus BAC clone RP24-221B7 from 17, complete sequence
          Length = 172011

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 75    caaacacttcttcttctgtacacttatt 102
             ||||||||| ||||| ||||||||||||
Sbjct: 35208 caaacacttattcttatgtacacttatt 35181
to top
>emb|CT806423.2| Pan troglodytes chromosome X clone CH251-25B01 map Xq28, complete
              sequence
          Length = 220032

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 124    aaagccagagcaacaaataa 143
              ||||||||||||||||||||
Sbjct: 108625 aaagccagagcaacaaataa 108606
to top
>gb|AC107776.12| Mus musculus chromosome 17, clone RP23-92G2, complete sequence
          Length = 147077

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 75    caaacacttcttcttctgtacacttatt 102
             ||||||||| ||||| ||||||||||||
Sbjct: 97213 caaacacttattcttatgtacacttatt 97186
to top
>emb|CR956387.14| Pig DNA sequence from clone CH242-148I13 on chromosome 17, complete
            sequence
          Length = 66802

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 45   aacaagtaaaaaccttcacc 64
            ||||||||||||||||||||
Sbjct: 5094 aacaagtaaaaaccttcacc 5075
to top
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 1        tcttttttaattatagcttg 20
                ||||||||||||||||||||
Sbjct: 27621473 tcttttttaattatagcttg 27621492


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,043,589
Number of Sequences: 3902068
Number of extensions: 5043589
Number of successful extensions: 88636
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 88044
Number of HSP's gapped (non-prelim): 592
length of query: 543
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 520
effective length of database: 17,143,297,704
effective search space: 8914514806080
effective search space used: 8914514806080
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top