ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd20c21
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|Z84486.1|HS528L19 Human DNA sequence from clone RP3-528L19 o... 42 2.1
2emb|AL732511.6| Zebrafish DNA sequence from clone CH211-140G4 in... 42 2.1
3gb|AC124043.2| Homo sapiens chromosome 3 clone RP11-143A18, comp... 42 2.1
4ref|XM_510687.1| PREDICTED: Pan troglodytes similar to high-mobi... 40 8.4
5ref|NM_197489.1| Oryza sativa (japonica cultivar-group) putative... 40 8.4
6gb|AC102523.9| Mus musculus chromosome 15, clone RP24-184F9, com... 40 8.4
7gb|BC021959.1| Homo sapiens high-mobility group 20A, mRNA (cDNA ... 40 8.4
8gb|AF309380.1| Oryza sativa (japonica cultivar-group) clone C242... 40 8.4
9emb|CR714599.2|CNS0GEC3 Tetraodon nigroviridis full-length cDNA 40 8.4
10ref|NM_018200.2| Homo sapiens high-mobility group 20A (HMG20A), ... 40 8.4
11gb|CP000320.1| Nitrobacter hamburgensis X14 plasmid 1, complete ... 40 8.4
12gb|AC091680.7| Oryza sativa chromosome 10 BAC OSJNBa0034L04 geno... 40 8.4
13gb|AC113948.5| Oryza sativa chromosome 10 BAC OSJNBb0038A07 geno... 40 8.4
14emb|AL355737.1|IRO548013 Homo sapiens mRNA full length insert cD... 40 8.4
15gb|BT007980.1| Synthetic construct Homo sapiens high-mobility gr... 40 8.4
16gb|BT006716.1| Homo sapiens high-mobility group 20A mRNA, comple... 40 8.4
17emb|CR769774.8| Zebrafish DNA sequence from clone DKEY-149I17 in... 40 8.4
18emb|BX511108.6| Zebrafish DNA sequence from clone DKEY-18F15 in ... 40 8.4
19gb|AF146222.1| Homo sapiens HMG domain protein HMGX1 (HMGX1) mRN... 40 8.4
20dbj|AK001601.1| Homo sapiens cDNA FLJ10739 fis, clone NT2RP30014... 40 8.4
21gb|DQ393784.1| Pseudomonas aeruginosa strain N2-1 class I integr... 40 8.4
22gb|AC090984.5| Homo sapiens chromosome 15, clone RP11-500C12, co... 40 8.4
23dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.4
24dbj|AK223100.1| Homo sapiens mRNA for high-mobility group 20A va... 40 8.4
25gb|AC093378.5| Homo sapiens BAC clone RP11-296O15 from 2, comple... 40 8.4
26gb|AY891624.1| Synthetic construct Homo sapiens clone FLH110896.... 40 8.4
27gb|AY891623.1| Synthetic construct Homo sapiens clone FLH110895.... 40 8.4
28gb|AY889043.1| Synthetic construct Homo sapiens clone FLH110899.... 40 8.4
29gb|AY889042.1| Synthetic construct Homo sapiens clone FLH110898.... 40 8.4
30gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome 40 8.4
31gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 8.4
32emb|AL831714.14| Mouse DNA sequence from clone RP23-311D24 on ch... 40 8.4

>emb|Z84486.1|HS528L19 Human DNA sequence from clone RP3-528L19 on chromosome 6q23 Contains
            part of the SGK gene for serum/glucocorticoid regulated
            kinase, complete sequence
          Length = 87013

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 91   atctgaagagaaacgagaacaatat 115
            ||||||||||||| |||||||||||
Sbjct: 2554 atctgaagagaaaagagaacaatat 2578



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>emb|AL732511.6| Zebrafish DNA sequence from clone CH211-140G4 in linkage group 19
             Contains two CpG islands, complete sequence
          Length = 175786

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 77    taattacaggagacatctgaa 97
             |||||||||||||||||||||
Sbjct: 83385 taattacaggagacatctgaa 83365



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>gb|AC124043.2| Homo sapiens chromosome 3 clone RP11-143A18, complete sequence
          Length = 160693

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 590   tagattctgatcaatgtaggc 610
             |||||||||||||||||||||
Sbjct: 42355 tagattctgatcaatgtaggc 42335



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>ref|XM_510687.1| PREDICTED: Pan troglodytes similar to high-mobility group 20A
           (LOC453766), mRNA
          Length = 1237

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 493 ccacctctagcttctccactgctg 516
           ||||||| ||||||||||||||||
Sbjct: 835 ccacctccagcttctccactgctg 812



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>ref|NM_197489.1| Oryza sativa (japonica cultivar-group) putative glutathione
           S-transferase (OSJNBb0038A07.5), mRNA
          Length = 841

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 241 ctgagcacgtttcatcttggcaaactcaacca 272
           |||| |||| ||||||||||||||||| ||||
Sbjct: 681 ctgaacacgcttcatcttggcaaactcgacca 650



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>gb|AC102523.9| Mus musculus chromosome 15, clone RP24-184F9, complete sequence
          Length = 171422

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 365   aggagctccaggccacagag 384
             ||||||||||||||||||||
Sbjct: 12902 aggagctccaggccacagag 12921



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>gb|BC021959.1| Homo sapiens high-mobility group 20A, mRNA (cDNA clone MGC:8813
            IMAGE:3908842), complete cds
          Length = 3898

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 493  ccacctctagcttctccactgctg 516
            ||||||| ||||||||||||||||
Sbjct: 1009 ccacctccagcttctccactgctg 986



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>gb|AF309380.1| Oryza sativa (japonica cultivar-group) clone C2421_1A putative
           glutathione S-transferase OsGSTU2 mRNA, partial cds
          Length = 867

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 241 ctgagcacgtttcatcttggcaaactcaacca 272
           |||| |||| ||||||||||||||||| ||||
Sbjct: 686 ctgaacacgcttcatcttggcaaactcgacca 655



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>emb|CR714599.2|CNS0GEC3 Tetraodon nigroviridis full-length cDNA
          Length = 883

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 315 caccaaagcgctccatccat 334
           ||||||||||||||||||||
Sbjct: 172 caccaaagcgctccatccat 153



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>ref|NM_018200.2| Homo sapiens high-mobility group 20A (HMG20A), mRNA
          Length = 3898

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 493  ccacctctagcttctccactgctg 516
            ||||||| ||||||||||||||||
Sbjct: 1009 ccacctccagcttctccactgctg 986



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>gb|CP000320.1| Nitrobacter hamburgensis X14 plasmid 1, complete sequence
          Length = 294829

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 428    acgtcaatgtagcccgacgttgtc 451
              ||||||||||||||| ||||||||
Sbjct: 167390 acgtcaatgtagcccaacgttgtc 167367



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>gb|AC091680.7| Oryza sativa chromosome 10 BAC OSJNBa0034L04 genomic sequence, complete
             sequence
          Length = 148611

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 241   ctgagcacgtttcatcttggcaaactcaacca 272
             |||| |||| ||||||||||||||||| ||||
Sbjct: 25635 ctgaacacgcttcatcttggcaaactcgacca 25666



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>gb|AC113948.5| Oryza sativa chromosome 10 BAC OSJNBb0038A07 genomic sequence, complete
             sequence
          Length = 132900

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 241   ctgagcacgtttcatcttggcaaactcaacca 272
             |||| |||| ||||||||||||||||| ||||
Sbjct: 83936 ctgaacacgcttcatcttggcaaactcgacca 83967



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>emb|AL355737.1|IRO548013 Homo sapiens mRNA full length insert cDNA clone EUROIMAGE 548013
          Length = 3669

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 493 ccacctctagcttctccactgctg 516
           ||||||| ||||||||||||||||
Sbjct: 821 ccacctccagcttctccactgctg 798



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>gb|BT007980.1| Synthetic construct Homo sapiens high-mobility group 20A mRNA,
           partial cds
          Length = 1044

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 493 ccacctctagcttctccactgctg 516
           ||||||| ||||||||||||||||
Sbjct: 808 ccacctccagcttctccactgctg 785



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>gb|BT006716.1| Homo sapiens high-mobility group 20A mRNA, complete cds
          Length = 1044

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 493 ccacctctagcttctccactgctg 516
           ||||||| ||||||||||||||||
Sbjct: 808 ccacctccagcttctccactgctg 785



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>emb|CR769774.8| Zebrafish DNA sequence from clone DKEY-149I17 in linkage group 2,
             complete sequence
          Length = 211636

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 120   tgttttgacatctttcatgg 139
             ||||||||||||||||||||
Sbjct: 50693 tgttttgacatctttcatgg 50712



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>emb|BX511108.6| Zebrafish DNA sequence from clone DKEY-18F15 in linkage group 11,
              complete sequence
          Length = 139640

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 559    tgcccacgaacatcttccac 578
              ||||||||||||||||||||
Sbjct: 105791 tgcccacgaacatcttccac 105810



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>gb|AF146222.1| Homo sapiens HMG domain protein HMGX1 (HMGX1) mRNA, complete cds
          Length = 3773

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 493 ccacctctagcttctccactgctg 516
           ||||||| ||||||||||||||||
Sbjct: 899 ccacctccagcttctccactgctg 876



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>dbj|AK001601.1| Homo sapiens cDNA FLJ10739 fis, clone NT2RP3001472, weakly similar
           to NONHISTONE CHROMOSOMAL PROTEIN 6A
          Length = 3803

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 493 ccacctctagcttctccactgctg 516
           ||||||| ||||||||||||||||
Sbjct: 929 ccacctccagcttctccactgctg 906



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>gb|DQ393784.1| Pseudomonas aeruginosa strain N2-1 class I integron, partial sequence
          Length = 5144

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 142  ccgatggcactccttccatg 161
            ||||||||||||||||||||
Sbjct: 2195 ccgatggcactccttccatg 2176



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>gb|AC090984.5| Homo sapiens chromosome 15, clone RP11-500C12, complete sequence
          Length = 190664

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 493    ccacctctagcttctccactgctg 516
              ||||||| ||||||||||||||||
Sbjct: 153382 ccacctccagcttctccactgctg 153359



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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                                
Query: 241      ctgagcacgtttcatcttggcaaactcaacca 272
                |||| |||| ||||||||||||||||| ||||
Sbjct: 20082555 ctgaacacgcttcatcttggcaaactcgacca 20082524



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>dbj|AK223100.1| Homo sapiens mRNA for high-mobility group 20A variant, clone:
           KAT05402
          Length = 1900

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 493 ccacctctagcttctccactgctg 516
           ||||||| ||||||||||||||||
Sbjct: 925 ccacctccagcttctccactgctg 902



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>gb|AC093378.5| Homo sapiens BAC clone RP11-296O15 from 2, complete sequence
          Length = 63849

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 587   gactagattctgatcaatgt 606
             ||||||||||||||||||||
Sbjct: 53055 gactagattctgatcaatgt 53074



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>gb|AY891624.1| Synthetic construct Homo sapiens clone FLH110896.01L high-mobility
           group 20A (HMG20A) mRNA, partial cds
          Length = 1044

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 493 ccacctctagcttctccactgctg 516
           ||||||| ||||||||||||||||
Sbjct: 808 ccacctccagcttctccactgctg 785



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>gb|AY891623.1| Synthetic construct Homo sapiens clone FLH110895.01L high-mobility
           group 20A (HMG20A) mRNA, partial cds
          Length = 1044

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 493 ccacctctagcttctccactgctg 516
           ||||||| ||||||||||||||||
Sbjct: 808 ccacctccagcttctccactgctg 785



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>gb|AY889043.1| Synthetic construct Homo sapiens clone FLH110899.01X high-mobility
           group 20A (HMG20A) mRNA, complete cds
          Length = 1044

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 493 ccacctctagcttctccactgctg 516
           ||||||| ||||||||||||||||
Sbjct: 808 ccacctccagcttctccactgctg 785



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>gb|AY889042.1| Synthetic construct Homo sapiens clone FLH110898.01X high-mobility
           group 20A (HMG20A) mRNA, complete cds
          Length = 1044

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 493 ccacctctagcttctccactgctg 516
           ||||||| ||||||||||||||||
Sbjct: 808 ccacctccagcttctccactgctg 785



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>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome
          Length = 3551823

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 139    gcgccgatggcactccttcc 158
              ||||||||||||||||||||
Sbjct: 183481 gcgccgatggcactccttcc 183500



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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                                
Query: 241      ctgagcacgtttcatcttggcaaactcaacca 272
                |||| |||| ||||||||||||||||| ||||
Sbjct: 20093831 ctgaacacgcttcatcttggcaaactcgacca 20093800



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>emb|AL831714.14| Mouse DNA sequence from clone RP23-311D24 on chromosome 4, complete
             sequence
          Length = 120815

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 123   tttgacatctttcatggcgc 142
             ||||||||||||||||||||
Sbjct: 30894 tttgacatctttcatggcgc 30913


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,868,837
Number of Sequences: 3902068
Number of extensions: 4868837
Number of successful extensions: 93640
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 93552
Number of HSP's gapped (non-prelim): 88
length of query: 615
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 592
effective length of database: 17,143,297,704
effective search space: 10148832240768
effective search space used: 10148832240768
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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