ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd20c18
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1HA22A_ARATH (Q9S7V4) HVA22-like protein a (AtHVA22a) 75 1e-13
2HA22C_ARATH (Q9S784) HVA22-like protein c (AtHVA22c) 58 1e-08
3HA22B_ARATH (Q9SYX7) HVA22-like protein b (AtHVA22b) 45 2e-04
4MSAS_PENPA (P22367) 6-methylsalicylic acid synthase (EC 2.3.1.16... 35 0.096
5MTHR_MACFA (Q60HE5) Methylenetetrahydrofolate reductase (EC 1.5.... 33 0.47
6MTHR_MOUSE (Q9WU20) Methylenetetrahydrofolate reductase (EC 1.5.... 30 3.1
7VP19_EHV1V (Q6S6P9) Capsid assembly and DNA maturation protein (... 30 5.3
8VP19_EHV1B (P28935) Capsid assembly and DNA maturation protein (... 30 5.3
9OR7C2_HUMAN (O60412) Olfactory receptor 7C2 (Olfactory receptor ... 27 5.5

>HA22A_ARATH (Q9S7V4) HVA22-like protein a (AtHVA22a)|
          Length = 177

 Score = 75.1 bits (183), Expect = 1e-13
 Identities = 33/58 (56%), Positives = 47/58 (81%), Gaps = 1/58 (1%)
 Frame = -2

Query: 523 AHVYEHFVRPMIVNQQVVNIWYIPKK-ENSDKPDDVISAAQKYIEQNGSKAFETLVNK 353
           A+VYEHFVRP+ VN + +NIWY+PKK +   KPDDV++AA+KYI +NG  AFE ++++
Sbjct: 95  AYVYEHFVRPVFVNPRSINIWYVPKKMDIFRKPDDVLTAAEKYIAENGPDAFEKILSR 152



to top

>HA22C_ARATH (Q9S784) HVA22-like protein c (AtHVA22c)|
          Length = 184

 Score = 58.2 bits (139), Expect = 1e-08
 Identities = 28/71 (39%), Positives = 46/71 (64%), Gaps = 6/71 (8%)
 Frame = -2

Query: 520 HVYEHFVRPMIVNQQ--VVNIWYIPKKENSDKP----DDVISAAQKYIEQNGSKAFETLV 359
           H+Y+HF+RP   + Q     IWY+P K+ +  P    DD+++AA+KY+EQ+G++AFE ++
Sbjct: 98  HIYKHFIRPFYRDPQRATTKIWYVPHKKFNFFPKRDDDDILTAAEKYMEQHGTEAFERMI 157

Query: 358 NKFKTTNARRS 326
            K  +    RS
Sbjct: 158 VKKDSYERGRS 168



to top

>HA22B_ARATH (Q9SYX7) HVA22-like protein b (AtHVA22b)|
          Length = 167

 Score = 44.7 bits (104), Expect = 2e-04
 Identities = 22/64 (34%), Positives = 37/64 (57%)
 Frame = -2

Query: 523 AHVYEHFVRPMIVNQQVVNIWYIPKKENSDKPDDVISAAQKYIEQNGSKAFETLVNKFKT 344
           A++YEH+VR  +++   VN+WY+P K    K DD+ + A K+   N S A +  +     
Sbjct: 95  AYLYEHYVRSFLLSPHTVNVWYVPAK----KDDDLGATAGKFTPVNDSGAPQEKIVSSVD 150

Query: 343 TNAR 332
           T+A+
Sbjct: 151 TSAK 154



to top

>MSAS_PENPA (P22367) 6-methylsalicylic acid synthase (EC 2.3.1.165) (6-MSAS)|
          Length = 1774

 Score = 35.4 bits (80), Expect = 0.096
 Identities = 13/31 (41%), Positives = 23/31 (74%)
 Frame = +3

Query: 66   EFTPQSGLINSYIKGTEGEIIQNAGLNIVIS 158
            E  P +GLIN+++KGT G+++QN  L + ++
Sbjct: 964  EIVPAAGLINTFLKGTGGQMLQNVVLRVPVA 994



to top

>MTHR_MACFA (Q60HE5) Methylenetetrahydrofolate reductase (EC 1.5.1.20)|
          Length = 656

 Score = 33.1 bits (74), Expect = 0.47
 Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 7/69 (10%)
 Frame = +2

Query: 221 SFPESVI-RVEEWIHIPSFQF------SFGPRSPFHLYLLQNRAPRVCSLKLVNESLKCF 379
           S P+S I R +EW   P+ ++      +FG    ++L+ L++++PR   LK+  E L   
Sbjct: 369 SRPKSYIYRTQEWDEFPNGRWGNSSSPAFGELKDYYLFYLKSKSPRELLLKMWGEELTSE 428

Query: 380 RSILFNVFL 406
            S+ F VF+
Sbjct: 429 ESV-FEVFV 436



to top

>MTHR_MOUSE (Q9WU20) Methylenetetrahydrofolate reductase (EC 1.5.1.20)|
          Length = 654

 Score = 30.4 bits (67), Expect = 3.1
 Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 7/68 (10%)
 Frame = +2

Query: 221 SFPESVI-RVEEWIHIPSFQF------SFGPRSPFHLYLLQNRAPRVCSLKLVNESLKCF 379
           S P+S I R ++W   P+ ++      +FG    ++L+ L++++PR   LK+  E L   
Sbjct: 368 SRPKSYIYRTQDWDEFPNGRWGNSSSPAFGELKDYYLFYLKSKSPREELLKMWGEELTSE 427

Query: 380 RSILFNVF 403
            S+ F VF
Sbjct: 428 ESV-FEVF 434



to top

>VP19_EHV1V (Q6S6P9) Capsid assembly and DNA maturation protein (Capsid protein|
           VP19C)
          Length = 465

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 18/64 (28%), Positives = 27/64 (42%)
 Frame = +3

Query: 57  DSLEFTPQSGLINSYIKGTEGEIIQNAGLNIVIS*KELAAHQVNIHCVT*CLNRRAFQNQ 236
           D++ F        S I+GTEG        N  +  +EL++ +    C    LN R F N 
Sbjct: 339 DAVSFLFHKARTESAIRGTEGADAPEPHPNAALPLQELSSSRCEPRCPPSRLNNREFTNA 398

Query: 237 *FGW 248
            + W
Sbjct: 399 LYQW 402



to top

>VP19_EHV1B (P28935) Capsid assembly and DNA maturation protein (Capsid protein|
           VP19C)
          Length = 465

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 18/64 (28%), Positives = 27/64 (42%)
 Frame = +3

Query: 57  DSLEFTPQSGLINSYIKGTEGEIIQNAGLNIVIS*KELAAHQVNIHCVT*CLNRRAFQNQ 236
           D++ F        S I+GTEG        N  +  +EL++ +    C    LN R F N 
Sbjct: 339 DAVSFLFHKARTESAIRGTEGADAPEPHPNAALPLQELSSSRCEPRCPPSRLNNREFTNA 398

Query: 237 *FGW 248
            + W
Sbjct: 399 LYQW 402



to top

>OR7C2_HUMAN (O60412) Olfactory receptor 7C2 (Olfactory receptor 19-18)|
           (OR19-18)
          Length = 320

 Score = 26.6 bits (57), Expect(2) = 5.5
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +3

Query: 384 PFCSMYFCAAEITSSGLSEFSFFGIYQMFTTC 479
           P C + F  ++I SS L   S  G ++ FTTC
Sbjct: 210 PLCGILFSYSQIFSSVLRVSSARGQHKAFTTC 241



 Score = 21.6 bits (44), Expect(2) = 5.5
 Identities = 10/24 (41%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
 Frame = +2

Query: 341 CSLKLVNESLKCFRSILFNVF-LC 409
           CS   +N  + CF +I+  VF LC
Sbjct: 189 CSDTFINNIVMCFVTIVLGVFPLC 212


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,084,868
Number of Sequences: 219361
Number of extensions: 1106051
Number of successful extensions: 2609
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2606
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 3970331829
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top