ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd20c18
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_467785.1| Oryza sativa (japonica cultivar-group), mRNA 168 1e-38
2dbj|AK108482.1| Oryza sativa (japonica cultivar-group) cDNA clon... 168 1e-38
3gb|AY110077.1| Zea mays CL20590_1 mRNA sequence 113 6e-22
4dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 111 2e-21
5dbj|AP005733.3| Oryza sativa (japonica cultivar-group) genomic D... 111 2e-21
6dbj|AP005848.3| Oryza sativa (japonica cultivar-group) genomic D... 111 2e-21
7gb|AY107684.1| Zea mays PCO095447 mRNA sequence 88 3e-14
8gb|AY106282.1| Zea mays PCO142333 mRNA sequence 74 5e-10
9gb|BT017605.1| Zea mays clone EL01N0432C07.c mRNA sequence 66 1e-07
10dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 54 5e-04
11dbj|AP003569.3| Oryza sativa (japonica cultivar-group) genomic D... 54 5e-04
12dbj|AP003513.2| Oryza sativa (japonica cultivar-group) genomic D... 54 5e-04
13dbj|AK102752.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 5e-04
14dbj|AK061806.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 5e-04
15emb|AL442223.13| Human DNA sequence from clone RP11-426P2 on chr... 44 0.45
16gb|AC115714.14| Mus musculus chromosome 12, clone RP23-477C24, c... 42 1.8
17gb|BC103504.1| Homo sapiens cDNA clone IMAGE:40001827, with appa... 42 1.8
18gb|AC022023.7| Homo sapiens chromosome 10 clone RP11-411P18, com... 42 1.8
19gb|AC108035.3| Homo sapiens BAC clone RP11-140P5 from 4, complet... 42 1.8
20emb|AL928977.10| Zebrafish DNA sequence from clone DKEY-24D19 in... 42 1.8
21dbj|AP000776.5| Homo sapiens genomic DNA, chromosome 11 clone:RP... 42 1.8
22emb|AL355543.13| Human DNA sequence from clone RP11-86E10 on chr... 42 1.8
23gb|AC145914.4| Gallus gallus BAC clone CH261-78G10 from chromoso... 42 1.8
24gb|AC163609.4| Mus musculus chromosome 1, clone RP24-128P11, com... 42 1.8
25gb|AC113328.5| Mus musculus chromosome 3, clone RP23-456E2, comp... 40 7.1
26gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 7.1
27emb|BX470177.14| Zebrafish DNA sequence from clone DKEY-31F3 in ... 40 7.1
28emb|BX908785.10| Zebrafish DNA sequence from clone DKEYP-51A2 in... 40 7.1
29emb|BX649247.9| Zebrafish DNA sequence from clone DKEY-181C10 in... 40 7.1
30gb|AC127677.4| Mus musculus BAC clone RP24-226C2 from chromosome... 40 7.1
31gb|AC134581.5| Mus musculus BAC clone RP24-90L20 from chromosome... 40 7.1
32gb|AC124525.3| Mus musculus BAC clone RP23-406I17 from chromosom... 40 7.1
33ref|XM_648522.1| Entamoeba histolytica HM-1:IMSS deoxyhypusine s... 40 7.1
34gb|AC154993.9| Mus musculus chromosome 3, clone RP23-246L14, com... 40 7.1
35emb|AL590105.19| Human DNA sequence from clone RP11-273H7 on chr... 40 7.1
36emb|AL031122.3|HS503N11 Human DNA sequence from clone RP3-503N11... 40 7.1
37gb|AC164153.2| Mus musculus chromosome 3, clone RP23-370M4, comp... 40 7.1
38gb|AF461424.2| Oryza sativa chromosome 3 clone OSJNBa0016B07, co... 40 7.1
39gb|BC050097.1| Homo sapiens leucine rich repeat containing 27, m... 40 7.1
40emb|CR381694.8| Zebrafish DNA sequence from clone CH211-55I2 in ... 40 7.1
41gb|AC117372.2| Homo sapiens 12 BAC RP11-266O15 (Roswell Park Can... 40 7.1
42gb|AF467162.1| Lasthenia californica subsp. californica isolate ... 40 7.1
43gb|AF467159.1| Lasthenia californica subsp. californica isolate ... 40 7.1
44gb|AF467153.1| Lasthenia californica subsp. californica isolate ... 40 7.1
45gb|AF467152.1| Lasthenia californica subsp. californica isolate ... 40 7.1
46gb|AF467149.1| Lasthenia californica subsp. californica isolate ... 40 7.1
47gb|AF467147.1| Lasthenia californica subsp. californica isolate ... 40 7.1
48gb|AF467146.1| Lasthenia californica subsp. californica isolate ... 40 7.1
49gb|AF467145.1| Lasthenia californica subsp. californica isolate ... 40 7.1
50gb|AF467142.1| Lasthenia californica subsp. californica isolate ... 40 7.1
51gb|AF467135.1| Lasthenia californica subsp. californica isolate ... 40 7.1
52gb|AF467130.1| Lasthenia californica subsp. californica isolate ... 40 7.1
53gb|AF467127.1| Lasthenia californica subsp. californica isolate ... 40 7.1
54gb|AC106033.4| Homo sapiens chromosome 18, clone CTD-2025K11, co... 40 7.1
55gb|AC104580.5| Homo sapiens chromosome 8, clone RP11-1084G15, co... 40 7.1
56gb|AC022828.10| Homo sapiens chromosome 8, clone RP11-119K24, co... 40 7.1
57gb|AF391705.1|AF391705 Lasthenia ornduffii isolate macp85 trnK g... 40 7.1
58gb|AF391703.1|AF391703 Lasthenia californica subsp. macrantha is... 40 7.1
59gb|AF391702.1|AF391702 Lasthenia californica subsp. macrantha is... 40 7.1
60gb|AF391701.1|AF391701 Lasthenia californica subsp. macrantha is... 40 7.1
61gb|AF391700.1|AF391700 Lasthenia californica subsp. macrantha is... 40 7.1
62gb|AF391699.1|AF391699 Lasthenia californica subsp. bakeri isola... 40 7.1
63gb|AF391698.1|AF391698 Lasthenia californica subsp. bakeri isola... 40 7.1
64gb|AF391694.1|AF391694 Lasthenia californica subsp. californica ... 40 7.1
65gb|AF391693.1|AF391693 Lasthenia californica subsp. californica ... 40 7.1
66gb|AF391692.1|AF391692 Lasthenia californica subsp. californica ... 40 7.1
67dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.1
68dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.1
69gb|AC003099.1| Homo sapiens chromosome 4, BAC clone B284B3, comp... 40 7.1
70gb|AC046130.25| Homo sapiens 12 BAC RP11-847H18 (Roswell Park Ca... 40 7.1
71gb|AC069145.5|AC069145 Oryza sativa chromosome 10 BAC OSJNBb0094... 40 7.1
72dbj|AK098652.1| Homo sapiens cDNA FLJ25786 fis, clone TST06852 40 7.1
73gb|AC132147.4| Mus musculus BAC clone RP23-2F11 from 8, complete... 40 7.1
74dbj|AP003729.3| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 7.1
75gb|CP000021.1| Vibrio fischeri ES114 chromosome II, complete seq... 40 7.1
76gb|AC005968.1|AC005968 Homo sapiens chromosome 18, clone hRPK.24... 40 7.1
77emb|CR376732.12| Zebrafish DNA sequence from clone DKEY-146H23 i... 40 7.1
78gb|AC137071.3| Genomic sequence for Oryza sativa, Nipponbare str... 40 7.1
79gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 7.1
80emb|AL935200.9| Zebrafish DNA sequence from clone CH211-237I5, c... 40 7.1
81emb|AL844569.4| Mouse DNA sequence from clone RP23-230H3 on chro... 40 7.1
82emb|AL352955.7|CNS05TBU Human chromosome 14 DNA sequence BAC R-1... 40 7.1
83emb|AL096806.1|CNS00YVC Homo sapiens genomic region containing h... 40 7.1
84dbj|AP001821.2| Homo sapiens genomic DNA, chromosome 4q22-q24, c... 40 7.1
85emb|AL672035.7| Mouse DNA sequence from clone RP23-314N8 on chro... 40 7.1
86dbj|AP003123.2| Homo sapiens genomic DNA, chromosome 11q, clone:... 40 7.1 
>ref|XM_467785.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 932

 Score =  168 bits (85), Expect = 1e-38
 Identities = 226/273 (82%)
 Strand = Plus / Minus

                                                                       
Query: 248 gaagaatggattcacatccctagcttccagttctcgttcggccctcgctctcctttccac 307
           |||||| |||||| ||||||| |||||   |||| |||| ||| | ||||| |||||  |
Sbjct: 696 gaagaaaggattctcatcccttgcttctgcttctagttcagccttggctcttctttcagc 637

                                                                       
Query: 308 ctctacctcctccaaaatagagcgcctcgcgtttgtagtcttaaacttgttaacgagagt 367
           |||||||||||||| ||| |||||||| | ||||| || ||||||||||||||| ||| |
Sbjct: 636 ctctacctcctccagaatggagcgccttgtgtttgaagccttaaacttgttaaccagact 577

                                                                       
Query: 368 ctcaaatgctttagatccattttgttcaatgtatttctgtgcagctgaaattacatcgtc 427
            ||||| ||| | ||||||||||||||||||||| |||| |||||||| || ||||| ||
Sbjct: 576 ttcaaacgctcttgatccattttgttcaatgtatctctgcgcagctgatatcacatcatc 517

                                                                       
Query: 428 gggtttatctgaattttccttttttggaatataccagatgtttacaacttgctggttcac 487
           |||| ||||||| |  |||||| |||| || |||||||| || || | ||||||||| ||
Sbjct: 516 gggtctatctgactcatcctttcttgggatgtaccagatattaactatttgctggttgac 457

                                            
Query: 488 aatcattggccgcacaaaatgctcataaacatg 520
           || |||||||| |||||| || ||||| |||||
Sbjct: 456 aaccattggcctcacaaagtgttcatagacatg 424
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>dbj|AK108482.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-143-F05, full
           insert sequence
          Length = 932

 Score =  168 bits (85), Expect = 1e-38
 Identities = 226/273 (82%)
 Strand = Plus / Minus

                                                                       
Query: 248 gaagaatggattcacatccctagcttccagttctcgttcggccctcgctctcctttccac 307
           |||||| |||||| ||||||| |||||   |||| |||| ||| | ||||| |||||  |
Sbjct: 696 gaagaagggattctcatcccttgcttctgcttctagttcagccttggctcttctttcagc 637

                                                                       
Query: 308 ctctacctcctccaaaatagagcgcctcgcgtttgtagtcttaaacttgttaacgagagt 367
           |||||||||||||| ||| |||||||| | ||||| || ||||||||||||||| ||| |
Sbjct: 636 ctctacctcctccagaatggagcgccttgtgtttgaagccttaaacttgttaaccagact 577

                                                                       
Query: 368 ctcaaatgctttagatccattttgttcaatgtatttctgtgcagctgaaattacatcgtc 427
            ||||| ||| | ||||||||||||||||||||| |||| |||||||| || ||||| ||
Sbjct: 576 ttcaaacgctcttgatccattttgttcaatgtatctctgcgcagctgatatcacatcatc 517

                                                                       
Query: 428 gggtttatctgaattttccttttttggaatataccagatgtttacaacttgctggttcac 487
           |||| ||||||| |  |||||| |||| || |||||||| || || | ||||||||| ||
Sbjct: 516 gggtctatctgactcatcctttcttgggatgtaccagatattaactatttgctggttgac 457

                                            
Query: 488 aatcattggccgcacaaaatgctcataaacatg 520
           || |||||||| |||||| || ||||| |||||
Sbjct: 456 aaccattggcctcacaaagtgttcatagacatg 424
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>gb|AY110077.1| Zea mays CL20590_1 mRNA sequence
          Length = 1056

 Score =  113 bits (57), Expect = 6e-22
 Identities = 72/77 (93%)
 Strand = Plus / Minus

                                                                       
Query: 444 tccttttttggaatataccagatgtttacaacttgctggttcacaatcattggccgcaca 503
           ||||| |||||||||||||||||||||||||||||||| || ||||||||||||| ||||
Sbjct: 531 tccttctttggaatataccagatgtttacaacttgctgatttacaatcattggcctcaca 472

                            
Query: 504 aaatgctcataaacatg 520
           ||||||||||| |||||
Sbjct: 471 aaatgctcatatacatg 455



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                 
Query: 297 ctcctttccacctctacctcctccaaaatagagcgcct 334
           |||||||| |||||||||||||||| ||| ||||||||
Sbjct: 678 ctcctttcaacctctacctcctccagaattgagcgcct 641
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  111 bits (56), Expect = 2e-21
 Identities = 140/168 (83%)
 Strand = Plus / Minus

                                                                            
Query: 353      cttgttaacgagagtctcaaatgctttagatccattttgttcaatgtatttctgtgcagc 412
                ||||||||| ||| | ||||| ||| | ||||||||||||||||||||| |||| |||||
Sbjct: 31427492 cttgttaaccagactttcaaacgctcttgatccattttgttcaatgtatctctgcgcagc 31427433

                                                                            
Query: 413      tgaaattacatcgtcgggtttatctgaattttccttttttggaatataccagatgtttac 472
                ||| || ||||| |||||| ||||||| |  |||||| |||| || |||||||| || ||
Sbjct: 31427432 tgatatcacatcatcgggtctatctgactcatcctttcttgggatgtaccagatattaac 31427373

                                                                
Query: 473      aacttgctggttcacaatcattggccgcacaaaatgctcataaacatg 520
                 | ||||||||| |||| |||||||| |||||| || ||||| |||||
Sbjct: 31427372 tatttgctggttgacaaccattggcctcacaaagtgttcatagacatg 31427325



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 88/107 (82%)
 Strand = Plus / Minus

                                                                            
Query: 248      gaagaatggattcacatccctagcttccagttctcgttcggccctcgctctcctttccac 307
                |||||| |||||| ||||||| |||||   |||| |||| ||| | ||||| |||||  |
Sbjct: 31427759 gaagaaaggattctcatcccttgcttctgcttctagttcagccttggctcttctttcagc 31427700

                                                               
Query: 308      ctctacctcctccaaaatagagcgcctcgcgtttgtagtcttaaact 354
                |||||||||||||| ||| |||||||| | ||||| || ||||||||
Sbjct: 31427699 ctctacctcctccagaatggagcgccttgtgtttgaagccttaaact 31427653
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>dbj|AP005733.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBb0024K03
          Length = 119796

 Score =  111 bits (56), Expect = 2e-21
 Identities = 140/168 (83%)
 Strand = Plus / Minus

                                                                          
Query: 353    cttgttaacgagagtctcaaatgctttagatccattttgttcaatgtatttctgtgcagc 412
              ||||||||| ||| | ||||| ||| | ||||||||||||||||||||| |||| |||||
Sbjct: 110066 cttgttaaccagactttcaaacgctcttgatccattttgttcaatgtatctctgcgcagc 110007

                                                                          
Query: 413    tgaaattacatcgtcgggtttatctgaattttccttttttggaatataccagatgtttac 472
              ||| || ||||| |||||| ||||||| |  |||||| |||| || |||||||| || ||
Sbjct: 110006 tgatatcacatcatcgggtctatctgactcatcctttcttgggatgtaccagatattaac 109947

                                                              
Query: 473    aacttgctggttcacaatcattggccgcacaaaatgctcataaacatg 520
               | ||||||||| |||| |||||||| |||||| || ||||| |||||
Sbjct: 109946 tatttgctggttgacaaccattggcctcacaaagtgttcatagacatg 109899



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 88/107 (82%)
 Strand = Plus / Minus

                                                                          
Query: 248    gaagaatggattcacatccctagcttccagttctcgttcggccctcgctctcctttccac 307
              |||||| |||||| ||||||| |||||   |||| |||| ||| | ||||| |||||  |
Sbjct: 110333 gaagaaaggattctcatcccttgcttctgcttctagttcagccttggctcttctttcagc 110274

                                                             
Query: 308    ctctacctcctccaaaatagagcgcctcgcgtttgtagtcttaaact 354
              |||||||||||||| ||| |||||||| | ||||| || ||||||||
Sbjct: 110273 ctctacctcctccagaatggagcgccttgtgtttgaagccttaaact 110227
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>dbj|AP005848.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBa0078N11
          Length = 155168

 Score =  111 bits (56), Expect = 2e-21
 Identities = 140/168 (83%)
 Strand = Plus / Minus

                                                                         
Query: 353   cttgttaacgagagtctcaaatgctttagatccattttgttcaatgtatttctgtgcagc 412
             ||||||||| ||| | ||||| ||| | ||||||||||||||||||||| |||| |||||
Sbjct: 62889 cttgttaaccagactttcaaacgctcttgatccattttgttcaatgtatctctgcgcagc 62830

                                                                         
Query: 413   tgaaattacatcgtcgggtttatctgaattttccttttttggaatataccagatgtttac 472
             ||| || ||||| |||||| ||||||| |  |||||| |||| || |||||||| || ||
Sbjct: 62829 tgatatcacatcatcgggtctatctgactcatcctttcttgggatgtaccagatattaac 62770

                                                             
Query: 473   aacttgctggttcacaatcattggccgcacaaaatgctcataaacatg 520
              | ||||||||| |||| |||||||| |||||| || ||||| |||||
Sbjct: 62769 tatttgctggttgacaaccattggcctcacaaagtgttcatagacatg 62722



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 88/107 (82%)
 Strand = Plus / Minus

                                                                         
Query: 248   gaagaatggattcacatccctagcttccagttctcgttcggccctcgctctcctttccac 307
             |||||| |||||| ||||||| |||||   |||| |||| ||| | ||||| |||||  |
Sbjct: 63156 gaagaaaggattctcatcccttgcttctgcttctagttcagccttggctcttctttcagc 63097

                                                            
Query: 308   ctctacctcctccaaaatagagcgcctcgcgtttgtagtcttaaact 354
             |||||||||||||| ||| |||||||| | ||||| || ||||||||
Sbjct: 63096 ctctacctcctccagaatggagcgccttgtgtttgaagccttaaact 63050
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>gb|AY107684.1| Zea mays PCO095447 mRNA sequence
          Length = 627

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 65/72 (90%)
 Strand = Plus / Minus

                                                                       
Query: 353 cttgttaacgagagtctcaaatgctttagatccattttgttcaatgtatttctgtgcagc 412
           ||||||||| ||| ||||||| ||||| ||||||||||| ||||||||  ||||||||||
Sbjct: 86  cttgttaacaagattctcaaacgcttttgatccattttgctcaatgtacctctgtgcagc 27

                       
Query: 413 tgaaattacatc 424
           ||||||||||||
Sbjct: 26  tgaaattacatc 15
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>gb|AY106282.1| Zea mays PCO142333 mRNA sequence
          Length = 802

 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 124/153 (81%)
 Strand = Plus / Minus

                                                                       
Query: 367 tctcaaatgctttagatccattttgttcaatgtatttctgtgcagctgaaattacatcgt 426
           ||||||||||||  | ||| ||||||||||| ||| ||| ||||||||| |  ||||| |
Sbjct: 658 tctcaaatgcttctggtccgttttgttcaatatatctctctgcagctgacagaacatcat 599

                                                                       
Query: 427 cgggtttatctgaattttccttttttggaatataccagatgtttacaacttgctggttca 486
           | | |||| ||   || || ||| ||||||||||||| ||||| || | |||  ||||||
Sbjct: 598 cagatttacctagcttctcatttcttggaatataccatatgttcactatttggcggttca 539

                                            
Query: 487 caatcattggccgcacaaaatgctcataaacat 519
           ||| |||||||||||||||||| || |||||||
Sbjct: 538 caaacattggccgcacaaaatggtcgtaaacat 506
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>gb|BT017605.1| Zea mays clone EL01N0432C07.c mRNA sequence
          Length = 1249

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 60/69 (86%)
 Strand = Plus / Minus

                                                                       
Query: 451 ttggaatataccagatgtttacaacttgctggttcacaatcattggccgcacaaaatgct 510
           ||||||||||||| ||||| || | |||  ||||||||| |||||||||||||||||| |
Sbjct: 622 ttggaatataccatatgttcactatttggcggttcacaaacattggccgcacaaaatggt 563

                    
Query: 511 cataaacat 519
           | |||||||
Sbjct: 562 cgtaaacat 554
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 66/79 (83%)
 Strand = Plus / Plus

                                                                           
Query: 441     ttttccttttttggaatataccagatgtttacaacttgctggttcacaatcattggccgc 500
               ||||| ||| |||||| ||||||||  ||||| | |||  | ||||||| ||||||||||
Sbjct: 6571825 ttttcttttcttggaacataccagacatttactatttgacgattcacaaacattggccgc 6571884

                                  
Query: 501     acaaaatgctcataaacat 519
               ||||| || ||||||||||
Sbjct: 6571885 acaaagtgatcataaacat 6571903
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>dbj|AP003569.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
            clone:P0425F05
          Length = 162858

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 66/79 (83%)
 Strand = Plus / Plus

                                                                        
Query: 441  ttttccttttttggaatataccagatgtttacaacttgctggttcacaatcattggccgc 500
            ||||| ||| |||||| ||||||||  ||||| | |||  | ||||||| ||||||||||
Sbjct: 5951 ttttcttttcttggaacataccagacatttactatttgacgattcacaaacattggccgc 6010

                               
Query: 501  acaaaatgctcataaacat 519
            ||||| || ||||||||||
Sbjct: 6011 acaaagtgatcataaacat 6029
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>dbj|AP003513.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0690H04
          Length = 137319

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 66/79 (83%)
 Strand = Plus / Plus

                                                                         
Query: 441   ttttccttttttggaatataccagatgtttacaacttgctggttcacaatcattggccgc 500
             ||||| ||| |||||| ||||||||  ||||| | |||  | ||||||| ||||||||||
Sbjct: 88201 ttttcttttcttggaacataccagacatttactatttgacgattcacaaacattggccgc 88260

                                
Query: 501   acaaaatgctcataaacat 519
             ||||| || ||||||||||
Sbjct: 88261 acaaagtgatcataaacat 88279
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>dbj|AK102752.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033106M05, full
           insert sequence
          Length = 1084

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 66/79 (83%)
 Strand = Plus / Minus

                                                                       
Query: 441 ttttccttttttggaatataccagatgtttacaacttgctggttcacaatcattggccgc 500
           ||||| ||| |||||| ||||||||  ||||| | |||  | ||||||| ||||||||||
Sbjct: 529 ttttcttttcttggaacataccagacatttactatttgacgattcacaaacattggccgc 470

                              
Query: 501 acaaaatgctcataaacat 519
           ||||| || ||||||||||
Sbjct: 469 acaaagtgatcataaacat 451
to top
>dbj|AK061806.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-040-A03, full
           insert sequence
          Length = 1072

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 66/79 (83%)
 Strand = Plus / Minus

                                                                       
Query: 441 ttttccttttttggaatataccagatgtttacaacttgctggttcacaatcattggccgc 500
           ||||| ||| |||||| ||||||||  ||||| | |||  | ||||||| ||||||||||
Sbjct: 472 ttttcttttcttggaacataccagacatttactatttgacgattcacaaacattggccgc 413

                              
Query: 501 acaaaatgctcataaacat 519
           ||||| || ||||||||||
Sbjct: 412 acaaagtgatcataaacat 394
to top
>emb|AL442223.13| Human DNA sequence from clone RP11-426P2 on chromosome 1 Contains the
             5' end of a variant of the DAB1 gene for disabled homolog
             1 (Drosophila) and a CpG island, complete sequence
          Length = 54683

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 387   ttttgttcaatgtatttctgtg 408
             ||||||||||||||||||||||
Sbjct: 11530 ttttgttcaatgtatttctgtg 11509
to top
>gb|AC115714.14| Mus musculus chromosome 12, clone RP23-477C24, complete sequence
          Length = 164272

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 243    gggtggaagaatggattcaca 263
              |||||||||||||||||||||
Sbjct: 100138 gggtggaagaatggattcaca 100158
to top
>gb|BC103504.1| Homo sapiens cDNA clone IMAGE:40001827, with apparent retained intron
          Length = 3555

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 143  aaatatagtaataagctaaaa 163
            |||||||||||||||||||||
Sbjct: 2708 aaatatagtaataagctaaaa 2728
to top
>gb|AC022023.7| Homo sapiens chromosome 10 clone RP11-411P18, complete sequence
          Length = 160420

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 143    aaatatagtaataagctaaaa 163
              |||||||||||||||||||||
Sbjct: 114245 aaatatagtaataagctaaaa 114265
to top
>gb|AC108035.3| Homo sapiens BAC clone RP11-140P5 from 4, complete sequence
          Length = 137055

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 440   attttccttttttggaatataccag 464
             |||||||||||||| ||||||||||
Sbjct: 99415 attttccttttttgtaatataccag 99391
to top
>emb|AL928977.10| Zebrafish DNA sequence from clone DKEY-24D19 in linkage group 20,
              complete sequence
          Length = 165014

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 13     aacatttcataactgttcagc 33
              |||||||||||||||||||||
Sbjct: 100604 aacatttcataactgttcagc 100624
to top
>dbj|AP000776.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-748H22, complete
             sequence
          Length = 191270

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 500   cacaaaatgctcataaacatg 520
             |||||||||||||||||||||
Sbjct: 32477 cacaaaatgctcataaacatg 32457
to top
>emb|AL355543.13| Human DNA sequence from clone RP11-86E10 on chromosome 10 Contains the
              ADRB1 gene for adrenergic beta-1- receptor, a
              ubiquitin-conjugating enzyme E2 variant 1 (UBE2V1)
              pseudogene, the gene for CTCL tumor antigen L14-2 (FLJ10188
              DKFZp762M1412 FLJ32946 FLJ37179 FLJ21086 FLJ32946
              FLJ35301), the 5' end of the TDRD1 gene for tudor domain
              containing 1 and three CpG islands, complete sequence
          Length = 179009

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 143    aaatatagtaataagctaaaa 163
              |||||||||||||||||||||
Sbjct: 122330 aaatatagtaataagctaaaa 122310
to top
>gb|AC145914.4| Gallus gallus BAC clone CH261-78G10 from chromosome unknown, complete
              sequence
          Length = 228201

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 123    atcatacaaaatgcaggacta 143
              |||||||||||||||||||||
Sbjct: 133752 atcatacaaaatgcaggacta 133772
to top
>gb|AC163609.4| Mus musculus chromosome 1, clone RP24-128P11, complete sequence
          Length = 164997

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 501   acaaaatgctcataaacatgc 521
             |||||||||||||||||||||
Sbjct: 37747 acaaaatgctcataaacatgc 37767
to top
>gb|AC113328.5| Mus musculus chromosome 3, clone RP23-456E2, complete sequence
          Length = 168421

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 385   cattttgttcaatgtatttc 404
             ||||||||||||||||||||
Sbjct: 66843 cattttgttcaatgtatttc 66862
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 302      ttccacctctacctcctccaaaat 325
                |||||||||| |||||||||||||
Sbjct: 11059141 ttccacctctccctcctccaaaat 11059164
to top
>emb|BX470177.14| Zebrafish DNA sequence from clone DKEY-31F3 in linkage group 3,
           complete sequence
          Length = 59444

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 220 gagctttccagaatcagtaa 239
           ||||||||||||||||||||
Sbjct: 841 gagctttccagaatcagtaa 860
to top
>emb|BX908785.10| Zebrafish DNA sequence from clone DKEYP-51A2 in linkage group 3,
             complete sequence
          Length = 68916

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 504   aaatgctcataaacatgcgc 523
             ||||||||||||||||||||
Sbjct: 47149 aaatgctcataaacatgcgc 47130
to top
>emb|BX649247.9| Zebrafish DNA sequence from clone DKEY-181C10 in linkage group 15,
              complete sequence
          Length = 194916

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 118    gagaaatcatacaaaatgca 137
              ||||||||||||||||||||
Sbjct: 159195 gagaaatcatacaaaatgca 159176
to top
>gb|AC127677.4| Mus musculus BAC clone RP24-226C2 from chromosome 8, complete sequence
          Length = 167913

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 120   gaaatcatacaaaatgcagg 139
             ||||||||||||||||||||
Sbjct: 13049 gaaatcatacaaaatgcagg 13068
to top
>gb|AC134581.5| Mus musculus BAC clone RP24-90L20 from chromosome 8, complete sequence
          Length = 201483

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 120   gaaatcatacaaaatgcagg 139
             ||||||||||||||||||||
Sbjct: 20008 gaaatcatacaaaatgcagg 19989
to top
>gb|AC124525.3| Mus musculus BAC clone RP23-406I17 from chromosome 2, complete sequence
          Length = 173181

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 387    ttttgttcaatgtatttctg 406
              ||||||||||||||||||||
Sbjct: 152374 ttttgttcaatgtatttctg 152393
to top
>ref|XM_648522.1| Entamoeba histolytica HM-1:IMSS deoxyhypusine synthase, putative
           (77.t00015) partial mRNA
          Length = 996

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 132 aatgcaggactaaatatagtaata 155
           |||||||||| |||||||||||||
Sbjct: 602 aatgcaggacaaaatatagtaata 579
to top
>gb|AC154993.9| Mus musculus chromosome 3, clone RP23-246L14, complete sequence
          Length = 208416

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 432   ttatctgaattttccttttt 451
             ||||||||||||||||||||
Sbjct: 68597 ttatctgaattttccttttt 68578
to top
>emb|AL590105.19| Human DNA sequence from clone RP11-273H7 on chromosome 10 Contains the
             5' end of the gene for protein kinase (PKE), gene
             KIAA1674, gene LOC170394, the 5' end of a novel gene and
             six CpG islands, complete sequence
          Length = 132772

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 287   ggccctcgctctcctttccacctctacctcct 318
             |||||||||||||| |||| |||| |||||||
Sbjct: 66646 ggccctcgctctcccttcctcctcgacctcct 66615
to top
>emb|AL031122.3|HS503N11 Human DNA sequence from clone RP3-503N11 on chromosome 6p24.1-24.3,
             complete sequence
          Length = 94749

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 141   ctaaatatagtaataagctaaaaa 164
             |||| |||||||||||||||||||
Sbjct: 41204 ctaattatagtaataagctaaaaa 41227
to top
>gb|AC164153.2| Mus musculus chromosome 3, clone RP23-370M4, complete sequence
          Length = 187100

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 385   cattttgttcaatgtatttc 404
             ||||||||||||||||||||
Sbjct: 88298 cattttgttcaatgtatttc 88317
to top
>gb|AF461424.2| Oryza sativa chromosome 3 clone OSJNBa0016B07, complete sequence
          Length = 167588

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 302   ttccacctctacctcctccaaaat 325
             |||||||||| |||||||||||||
Sbjct: 73981 ttccacctctccctcctccaaaat 73958
to top
>gb|BC050097.1| Homo sapiens leucine rich repeat containing 27, mRNA (cDNA clone
            MGC:48601 IMAGE:5273395), complete cds
          Length = 1753

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 287  ggccctcgctctcctttccacctctacctcct 318
            |||||||||||||| |||| |||| |||||||
Sbjct: 1534 ggccctcgctctcccttcctcctcgacctcct 1503
to top
>emb|CR381694.8| Zebrafish DNA sequence from clone CH211-55I2 in linkage group 10,
             complete sequence
          Length = 178736

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 118   gagaaatcatacaaaatgca 137
             ||||||||||||||||||||
Sbjct: 32582 gagaaatcatacaaaatgca 32563
to top
>gb|AC117372.2| Homo sapiens 12 BAC RP11-266O15 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 165301

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 386    attttgttcaatgtatttct 405
              ||||||||||||||||||||
Sbjct: 154034 attttgttcaatgtatttct 154015
to top
>gb|AF467162.1| Lasthenia californica subsp. californica isolate cali154 tRNA-Lys
           (trnK) gene, intron; and maturase K (matK) gene, partial
           cds; chloroplast genes for chloroplast products
          Length = 407

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 6   tatttacaacatttcataac 25
           ||||||||||||||||||||
Sbjct: 197 tatttacaacatttcataac 178
to top
>gb|AF467159.1| Lasthenia californica subsp. californica isolate cali146 tRNA-Lys
           (trnK) gene, intron; and maturase K (matK) gene, partial
           cds; chloroplast genes for chloroplast products
          Length = 407

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 6   tatttacaacatttcataac 25
           ||||||||||||||||||||
Sbjct: 198 tatttacaacatttcataac 179
to top
>gb|AF467153.1| Lasthenia californica subsp. californica isolate cali125h tRNA-Lys
           (trnK) gene, intron; and maturase K (matK) gene, partial
           cds; chloroplast genes for chloroplast products
          Length = 413

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 6   tatttacaacatttcataac 25
           ||||||||||||||||||||
Sbjct: 198 tatttacaacatttcataac 179
to top
>gb|AF467152.1| Lasthenia californica subsp. californica isolate cali118d tRNA-Lys
           (trnK) gene, intron; and maturase K (matK) gene, partial
           cds; chloroplast genes for chloroplast products
          Length = 404

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 6   tatttacaacatttcataac 25
           ||||||||||||||||||||
Sbjct: 198 tatttacaacatttcataac 179
to top
>gb|AF467149.1| Lasthenia californica subsp. californica isolate cali108d tRNA-Lys
           (trnK) gene, intron; and maturase K (matK) gene, partial
           cds; chloroplast genes for chloroplast products
          Length = 408

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 6   tatttacaacatttcataac 25
           ||||||||||||||||||||
Sbjct: 198 tatttacaacatttcataac 179
to top
>gb|AF467147.1| Lasthenia californica subsp. californica isolate cali106t tRNA-Lys
           (trnK) gene, intron; and maturase K (matK) gene, partial
           cds; chloroplast genes for chloroplast products
          Length = 402

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 6   tatttacaacatttcataac 25
           ||||||||||||||||||||
Sbjct: 197 tatttacaacatttcataac 178
to top
>gb|AF467146.1| Lasthenia californica subsp. californica isolate cali105d tRNA-Lys
           (trnK) gene, intron; and maturase K (matK) gene, partial
           cds; chloroplast genes for chloroplast products
          Length = 403

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 6   tatttacaacatttcataac 25
           ||||||||||||||||||||
Sbjct: 198 tatttacaacatttcataac 179
to top
>gb|AF467145.1| Lasthenia californica subsp. californica isolate cali102d tRNA-Lys
           (trnK) gene, intron; and maturase K (matK) gene, partial
           cds; chloroplast genes for chloroplast products
          Length = 404

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 6   tatttacaacatttcataac 25
           ||||||||||||||||||||
Sbjct: 198 tatttacaacatttcataac 179
to top
>gb|AF467142.1| Lasthenia californica subsp. californica isolate cali98d tRNA-Lys
           (trnK) gene, intron; and maturase K (matK) gene, partial
           cds; chloroplast genes for chloroplast products
          Length = 403

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 6   tatttacaacatttcataac 25
           ||||||||||||||||||||
Sbjct: 198 tatttacaacatttcataac 179
to top
>gb|AF467135.1| Lasthenia californica subsp. californica isolate cali70d tRNA-Lys
           (trnK) gene, intron; and maturase K (matK) gene, partial
           cds; chloroplast genes for chloroplast products
          Length = 410

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 6   tatttacaacatttcataac 25
           ||||||||||||||||||||
Sbjct: 198 tatttacaacatttcataac 179
to top
>gb|AF467130.1| Lasthenia californica subsp. californica isolate cali59 tRNA-Lys
           (trnK) gene, intron; and maturase K (matK) gene, partial
           cds; chloroplast genes for chloroplast products
          Length = 408

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 6   tatttacaacatttcataac 25
           ||||||||||||||||||||
Sbjct: 198 tatttacaacatttcataac 179
to top
>gb|AF467127.1| Lasthenia californica subsp. californica isolate cali32 tRNA-Lys
           (trnK) gene, intron; and maturase K (matK) gene, partial
           cds; chloroplast genes for chloroplast products
          Length = 409

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 6   tatttacaacatttcataac 25
           ||||||||||||||||||||
Sbjct: 198 tatttacaacatttcataac 179
to top
>gb|AC106033.4| Homo sapiens chromosome 18, clone CTD-2025K11, complete sequence
          Length = 95930

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 434   atctgaattttccttttttg 453
             ||||||||||||||||||||
Sbjct: 55029 atctgaattttccttttttg 55048
to top
>gb|AC104580.5| Homo sapiens chromosome 8, clone RP11-1084G15, complete sequence
          Length = 179270

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 437   tgaattttccttttttggaa 456
             ||||||||||||||||||||
Sbjct: 51294 tgaattttccttttttggaa 51313
to top
>gb|AC022828.10| Homo sapiens chromosome 8, clone RP11-119K24, complete sequence
          Length = 137289

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 437    tgaattttccttttttggaa 456
              ||||||||||||||||||||
Sbjct: 110173 tgaattttccttttttggaa 110192
to top
>gb|AF391705.1|AF391705 Lasthenia ornduffii isolate macp85 trnK gene, partial sequence; and
           maturase K (matK) gene, partial cds; chloroplast genes
           for chloroplast products
          Length = 403

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 6   tatttacaacatttcataac 25
           ||||||||||||||||||||
Sbjct: 198 tatttacaacatttcataac 179
to top
>gb|AF391703.1|AF391703 Lasthenia californica subsp. macrantha isolate macm135 trnK gene,
           partial sequence; and maturase K (matK) gene, partial
           cds; chloroplast genes for chloroplast products
          Length = 404

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 6   tatttacaacatttcataac 25
           ||||||||||||||||||||
Sbjct: 198 tatttacaacatttcataac 179
to top
>gb|AF391702.1|AF391702 Lasthenia californica subsp. macrantha isolate macm81 trnK gene,
           partial sequence; and maturase K (matK) gene, partial
           cds; chloroplast genes for chloroplast products
          Length = 402

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 6   tatttacaacatttcataac 25
           ||||||||||||||||||||
Sbjct: 198 tatttacaacatttcataac 179
to top
>gb|AF391701.1|AF391701 Lasthenia californica subsp. macrantha isolate macm80 trnK gene,
           partial sequence; and maturase K (matK) gene, partial
           cds; chloroplast genes for chloroplast products
          Length = 406

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 6   tatttacaacatttcataac 25
           ||||||||||||||||||||
Sbjct: 198 tatttacaacatttcataac 179
to top
>gb|AF391700.1|AF391700 Lasthenia californica subsp. macrantha isolate macm08 trnK gene,
           partial sequence; and maturase K (matK) gene, partial
           cds; chloroplast genes for chloroplast products
          Length = 404

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 6   tatttacaacatttcataac 25
           ||||||||||||||||||||
Sbjct: 198 tatttacaacatttcataac 179
to top
>gb|AF391699.1|AF391699 Lasthenia californica subsp. bakeri isolate macb137 trnK gene,
           partial sequence; and maturase K (matK) gene, partial
           cds; chloroplast genes for chloroplast products
          Length = 404

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 6   tatttacaacatttcataac 25
           ||||||||||||||||||||
Sbjct: 198 tatttacaacatttcataac 179
to top
>gb|AF391698.1|AF391698 Lasthenia californica subsp. bakeri isolate macb53 trnK gene,
           partial sequence; and maturase K (matK) gene, partial
           cds; chloroplast genes for chloroplast products
          Length = 408

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 6   tatttacaacatttcataac 25
           ||||||||||||||||||||
Sbjct: 198 tatttacaacatttcataac 179
to top
>gb|AF391694.1|AF391694 Lasthenia californica subsp. californica isolate cali121d trnK
           gene, partial sequence; and maturase K (matK) gene,
           partial cds; chloroplast genes for chloroplast products
          Length = 404

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 6   tatttacaacatttcataac 25
           ||||||||||||||||||||
Sbjct: 198 tatttacaacatttcataac 179
to top
>gb|AF391693.1|AF391693 Lasthenia californica subsp. californica isolate cali117d trnK
           gene, partial sequence; and maturase K (matK) gene,
           partial cds; chloroplast genes for chloroplast products
          Length = 402

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 6   tatttacaacatttcataac 25
           ||||||||||||||||||||
Sbjct: 198 tatttacaacatttcataac 179
to top
>gb|AF391692.1|AF391692 Lasthenia californica subsp. californica isolate cali50t trnK gene,
           partial sequence; and maturase K (matK) gene, partial
           cds; chloroplast genes for chloroplast products
          Length = 403

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 6   tatttacaacatttcataac 25
           ||||||||||||||||||||
Sbjct: 198 tatttacaacatttcataac 179
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 433      tatctgaattttcctttttt 452
                ||||||||||||||||||||
Sbjct: 17035686 tatctgaattttcctttttt 17035705
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 302      ttccacctctacctcctccaaaat 325
                |||||||||| |||||||||||||
Sbjct: 11055904 ttccacctctccctcctccaaaat 11055927
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>gb|AC003099.1| Homo sapiens chromosome 4, BAC clone B284B3, complete sequence
          Length = 95129

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 5     ctatttacaacatttcataa 24
             ||||||||||||||||||||
Sbjct: 34965 ctatttacaacatttcataa 34984
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>gb|AC046130.25| Homo sapiens 12 BAC RP11-847H18 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 176600

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 386    attttgttcaatgtatttct 405
              ||||||||||||||||||||
Sbjct: 102253 attttgttcaatgtatttct 102234
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>gb|AC069145.5|AC069145 Oryza sativa chromosome 10 BAC OSJNBb0094K03 genomic sequence, complete
             sequence
          Length = 135216

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 433   tatctgaattttcctttttt 452
             ||||||||||||||||||||
Sbjct: 76178 tatctgaattttcctttttt 76197
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>dbj|AK098652.1| Homo sapiens cDNA FLJ25786 fis, clone TST06852
          Length = 1809

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 287  ggccctcgctctcctttccacctctacctcct 318
            |||||||||||||| |||| |||| |||||||
Sbjct: 1606 ggccctcgctctcccttcctcctcgacctcct 1575
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>gb|AC132147.4| Mus musculus BAC clone RP23-2F11 from 8, complete sequence
          Length = 237167

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 33    ctacgtaatatcaaatctaaatat 56
             |||||||| |||||||||||||||
Sbjct: 88781 ctacgtaagatcaaatctaaatat 88804
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>dbj|AP003729.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-126A9, complete
             sequence
          Length = 49870

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 446   cttttttggaatataccaga 465
             ||||||||||||||||||||
Sbjct: 31630 cttttttggaatataccaga 31611
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>gb|CP000021.1| Vibrio fischeri ES114 chromosome II, complete sequence
          Length = 1332022

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 144    aatatagtaataagctaaaa 163
              ||||||||||||||||||||
Sbjct: 410249 aatatagtaataagctaaaa 410230
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>gb|AC005968.1|AC005968 Homo sapiens chromosome 18, clone hRPK.24_A_23, complete sequence
          Length = 145603

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 432   ttatctgaattttccttttt 451
             ||||||||||||||||||||
Sbjct: 21422 ttatctgaattttccttttt 21441
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>emb|CR376732.12| Zebrafish DNA sequence from clone DKEY-146H23 in linkage group 3,
              complete sequence
          Length = 171210

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 118    gagaaatcatacaaaatgca 137
              ||||||||||||||||||||
Sbjct: 109444 gagaaatcatacaaaatgca 109425
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>gb|AC137071.3| Genomic sequence for Oryza sativa, Nipponbare strain, clone
              OSJNBa0042B10, from chromosome 3, complete sequence
          Length = 144205

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 302    ttccacctctacctcctccaaaat 325
              |||||||||| |||||||||||||
Sbjct: 102626 ttccacctctccctcctccaaaat 102649
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 433      tatctgaattttcctttttt 452
                ||||||||||||||||||||
Sbjct: 17044726 tatctgaattttcctttttt 17044745
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>emb|AL935200.9| Zebrafish DNA sequence from clone CH211-237I5, complete sequence
          Length = 160710

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 220   gagctttccagaatcagtaa 239
             ||||||||||||||||||||
Sbjct: 88996 gagctttccagaatcagtaa 89015
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>emb|AL844569.4| Mouse DNA sequence from clone RP23-230H3 on chromosome 2, complete
              sequence
          Length = 198872

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 387    ttttgttcaatgtatttctg 406
              ||||||||||||||||||||
Sbjct: 103904 ttttgttcaatgtatttctg 103885
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>emb|AL352955.7|CNS05TBU Human chromosome 14 DNA sequence BAC R-1141N12 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 158099

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 432    ttatctgaattttccttttt 451
              ||||||||||||||||||||
Sbjct: 133230 ttatctgaattttccttttt 133249
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>emb|AL096806.1|CNS00YVC Homo sapiens genomic region containing hypervariable minisatellites
             chromosome 10[10q26.3] of Homo sapiens
          Length = 28712

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 287   ggccctcgctctcctttccacctctacctcct 318
             |||||||||||||| |||| |||| |||||||
Sbjct: 12548 ggccctcgctctcccttcctcctcgacctcct 12579
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>dbj|AP001821.2| Homo sapiens genomic DNA, chromosome 4q22-q24, clone:2302A17, complete
             sequence
          Length = 108388

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 5     ctatttacaacatttcataa 24
             ||||||||||||||||||||
Sbjct: 53433 ctatttacaacatttcataa 53414
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>emb|AL672035.7| Mouse DNA sequence from clone RP23-314N8 on chromosome X, complete
              sequence
          Length = 154002

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 437    tgaattttccttttttggaa 456
              ||||||||||||||||||||
Sbjct: 114817 tgaattttccttttttggaa 114798
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>dbj|AP003123.2| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-402K1, complete
             sequence
          Length = 187735

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 446   cttttttggaatataccaga 465
             ||||||||||||||||||||
Sbjct: 22171 cttttttggaatataccaga 22152


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,752,725
Number of Sequences: 3902068
Number of extensions: 5752725
Number of successful extensions: 120999
Number of sequences better than 10.0: 86
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 120612
Number of HSP's gapped (non-prelim): 387
length of query: 524
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 501
effective length of database: 17,143,297,704
effective search space: 8588792149704
effective search space used: 8588792149704
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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