ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd20c17 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_473923.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2124 Score = 56.0 bits (28), Expect = 1e-04 Identities = 43/48 (89%) Strand = Plus / Minus Query: 192 tcaccgaaagttatcttcttccctgcactaggtgtgccagcactctgc 239 |||||||| ||| ||||||| |||||||||||||| ||||| |||||| Sbjct: 2114 tcaccgaatgttgtcttctttcctgcactaggtgtaccagcgctctgc 2067 Score = 42.1 bits (21), Expect = 1.7 Identities = 36/41 (87%) Strand = Plus / Minus Query: 415 tgttatctgccctaggcttggcttcatcaacaaacaagctg 455 ||||||| | ||||||| | |||||||||||| |||||||| Sbjct: 1903 tgttatcgggcctaggcctcgcttcatcaacatacaagctg 1863
>dbj|AK103446.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033129G11, full insert sequence Length = 2447 Score = 56.0 bits (28), Expect = 1e-04 Identities = 43/48 (89%) Strand = Plus / Minus Query: 192 tcaccgaaagttatcttcttccctgcactaggtgtgccagcactctgc 239 |||||||| ||| ||||||| |||||||||||||| ||||| |||||| Sbjct: 2256 tcaccgaatgttgtcttctttcctgcactaggtgtaccagcgctctgc 2209 Score = 42.1 bits (21), Expect = 1.7 Identities = 36/41 (87%) Strand = Plus / Minus Query: 415 tgttatctgccctaggcttggcttcatcaacaaacaagctg 455 ||||||| | ||||||| | |||||||||||| |||||||| Sbjct: 2045 tgttatcgggcctaggcctcgcttcatcaacatacaagctg 2005
>dbj|AK063918.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-123-B06, full insert sequence Length = 1943 Score = 56.0 bits (28), Expect = 1e-04 Identities = 43/48 (89%) Strand = Plus / Minus Query: 192 tcaccgaaagttatcttcttccctgcactaggtgtgccagcactctgc 239 |||||||| ||| ||||||| |||||||||||||| ||||| |||||| Sbjct: 1701 tcaccgaatgttgtcttctttcctgcactaggtgtaccagcgctctgc 1654 Score = 42.1 bits (21), Expect = 1.7 Identities = 36/41 (87%) Strand = Plus / Minus Query: 415 tgttatctgccctaggcttggcttcatcaacaaacaagctg 455 ||||||| | ||||||| | |||||||||||| |||||||| Sbjct: 1490 tgttatcgggcctaggcctcgcttcatcaacatacaagctg 1450
>ref|XM_480492.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2090 Score = 52.0 bits (26), Expect = 0.002 Identities = 47/54 (87%) Strand = Plus / Minus Query: 189 tcatcaccgaaagttatcttcttccctgcactaggtgtgccagcactctgcctg 242 ||||| || |||||| ||||||| |||| ||||| ||| ||||||||||||||| Sbjct: 1819 tcatctccaaaagttgtcttctttcctgtactagctgtaccagcactctgcctg 1766 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 427 taggcttggcttcatcaaca 446 |||||||||||||||||||| Sbjct: 1581 taggcttggcttcatcaaca 1562
>gb|AY644645.1| Oryza sativa (indica cultivar-group) putative nucleolin (NUC) mRNA, complete cds Length = 2039 Score = 52.0 bits (26), Expect = 0.002 Identities = 47/54 (87%) Strand = Plus / Minus Query: 189 tcatcaccgaaagttatcttcttccctgcactaggtgtgccagcactctgcctg 242 ||||| || |||||| ||||||| |||| ||||| ||| ||||||||||||||| Sbjct: 1732 tcatctccaaaagttgtcttctttcctgtactagctgtaccagcactctgcctg 1679 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 427 taggcttggcttcatcaaca 446 |||||||||||||||||||| Sbjct: 1494 taggcttggcttcatcaaca 1475
>dbj|AK103422.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033128K11, full insert sequence Length = 2089 Score = 52.0 bits (26), Expect = 0.002 Identities = 47/54 (87%) Strand = Plus / Minus Query: 189 tcatcaccgaaagttatcttcttccctgcactaggtgtgccagcactctgcctg 242 ||||| || |||||| ||||||| |||| ||||| ||| ||||||||||||||| Sbjct: 1818 tcatctccaaaagttgtcttctttcctgtactagctgtaccagcactctgcctg 1765 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 427 taggcttggcttcatcaaca 446 |||||||||||||||||||| Sbjct: 1580 taggcttggcttcatcaaca 1561
>dbj|AK059471.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-028-E02, full insert sequence Length = 1160 Score = 52.0 bits (26), Expect = 0.002 Identities = 47/54 (87%) Strand = Plus / Minus Query: 189 tcatcaccgaaagttatcttcttccctgcactaggtgtgccagcactctgcctg 242 ||||| || |||||| ||||||| |||| ||||| ||| ||||||||||||||| Sbjct: 949 tcatctccaaaagttgtcttctttcctgtactagctgtaccagcactctgcctg 896 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 427 taggcttggcttcatcaaca 446 |||||||||||||||||||| Sbjct: 711 taggcttggcttcatcaaca 692
>gb|AY318096.1| Mus musculus olfactory receptor Olfr910 (Olfr910) gene, complete cds Length = 933 Score = 50.1 bits (25), Expect = 0.007 Identities = 28/29 (96%) Strand = Plus / Minus Query: 54 agataacataaaaacagaagaagtagagt 82 |||||||| |||||||||||||||||||| Sbjct: 328 agataacaaaaaaacagaagaagtagagt 300
>gb|AC069559.27| Mus musculus strain C57BL/6J clone rp23-136j2 map 9, complete sequence Length = 185365 Score = 50.1 bits (25), Expect = 0.007 Identities = 28/29 (96%) Strand = Plus / Plus Query: 54 agataacataaaaacagaagaagtagagt 82 |||||||| |||||||||||||||||||| Sbjct: 86373 agataacaaaaaaacagaagaagtagagt 86401 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 54 agataacataaaaacagaagaagtagagt 82 |||| ||| |||||||||||||||||||| Sbjct: 43991 agatgacaaaaaaacagaagaagtagagt 44019
>gb|AY073283.1| Mus musculus olfactory receptor MOR165-3 gene, complete cds Length = 933 Score = 50.1 bits (25), Expect = 0.007 Identities = 28/29 (96%) Strand = Plus / Minus Query: 54 agataacataaaaacagaagaagtagagt 82 |||||||| |||||||||||||||||||| Sbjct: 328 agataacaaaaaaacagaagaagtagagt 300
>gb|AY073284.1| Mus musculus olfactory receptor MOR165-4 gene, complete cds Length = 933 Score = 50.1 bits (25), Expect = 0.007 Identities = 28/29 (96%) Strand = Plus / Minus Query: 54 agataacataaaaacagaagaagtagagt 82 |||||||| |||||||||||||||||||| Sbjct: 328 agataacaaaaaaacagaagaagtagagt 300
>ref|NM_146810.1| Mus musculus olfactory receptor 912 (Olfr912), mRNA Length = 933 Score = 50.1 bits (25), Expect = 0.007 Identities = 28/29 (96%) Strand = Plus / Minus Query: 54 agataacataaaaacagaagaagtagagt 82 |||||||| |||||||||||||||||||| Sbjct: 328 agataacaaaaaaacagaagaagtagagt 300
>ref|NM_146811.1| Mus musculus olfactory receptor 910 (Olfr910), mRNA Length = 933 Score = 50.1 bits (25), Expect = 0.007 Identities = 28/29 (96%) Strand = Plus / Minus Query: 54 agataacataaaaacagaagaagtagagt 82 |||||||| |||||||||||||||||||| Sbjct: 328 agataacaaaaaaacagaagaagtagagt 300
>gb|AC155245.3| Mus musculus BAC clone RP24-314P16 from chromosome 12, complete sequence Length = 169249 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 372 tcaaaccttcctcctctcctgtt 394 ||||||||||||||||||||||| Sbjct: 138224 tcaaaccttcctcctctcctgtt 138246
>gb|AC154481.3| Mus musculus BAC clone RP23-197A2 from chromosome 12, complete sequence Length = 197101 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 372 tcaaaccttcctcctctcctgtt 394 ||||||||||||||||||||||| Sbjct: 110251 tcaaaccttcctcctctcctgtt 110273
>gb|AC147129.3| Mus musculus BAC clone RP24-531L5 from 1, complete sequence Length = 147476 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Plus Query: 48 ataataagataacataaaaaca 69 |||||||||||||||||||||| Sbjct: 71933 ataataagataacataaaaaca 71954
>gb|AY318098.1| Mus musculus olfactory receptor Olfr912 (Olfr912) gene, complete cds Length = 933 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 54 agataacataaaaacagaagaagtagagt 82 |||| ||| |||||||||||||||||||| Sbjct: 328 agatgacaaaaaaacagaagaagtagagt 300
>emb|AL669842.11| Mouse DNA sequence from clone RP23-25D18 on chromosome 11 Contains three novel genes, the 3' end of the Ntn1 gene for netrin 1 and the 3' end of the Stx8 gene for syntaxin 8, complete sequence Length = 121134 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 94 aaggaaatgtttgacatttca 114 ||||||||||||||||||||| Sbjct: 72780 aaggaaatgtttgacatttca 72800
>emb|AL662970.2|OSJN00174 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0058K23, complete sequence Length = 164805 Score = 42.1 bits (21), Expect = 1.7 Identities = 36/41 (87%) Strand = Plus / Minus Query: 415 tgttatctgccctaggcttggcttcatcaacaaacaagctg 455 ||||||| | ||||||| | |||||||||||| |||||||| Sbjct: 162243 tgttatcgggcctaggcctcgcttcatcaacatacaagctg 162203
>emb|CR860589.1| Pongo pygmaeus mRNA; cDNA DKFZp459J1919 (from clone DKFZp459J1919) Length = 1885 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 436 cttcatcaacaaacaagctga 456 ||||||||||||||||||||| Sbjct: 1571 cttcatcaacaaacaagctga 1591
>ref|NM_001000452.1| Rattus norvegicus olfactory receptor 1248 (predicted) (Olr1248_predicted), mRNA Length = 933 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 54 agataacataaaaacagaagaagtagagt 82 |||| ||| |||||||||||||||||||| Sbjct: 328 agatgacaaaaaaacagaagaagtagagt 300
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 42.1 bits (21), Expect = 1.7 Identities = 36/41 (87%) Strand = Plus / Minus Query: 415 tgttatctgccctaggcttggcttcatcaacaaacaagctg 455 ||||||| | ||||||| | |||||||||||| |||||||| Sbjct: 31584560 tgttatcgggcctaggcctcgcttcatcaacatacaagctg 31584520
>gb|AC105312.2| Homo sapiens BAC clone RP11-17C4 from 4, complete sequence Length = 127437 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 45 gtaataataagataacataaaaaca 69 |||||||||||| |||||||||||| Sbjct: 113141 gtaataataagaaaacataaaaaca 113165
>emb|BX649457.15| Zebrafish DNA sequence from clone DKEYP-87E7 in linkage group 22, complete sequence Length = 159207 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 47 aataataagataacataaaaa 67 ||||||||||||||||||||| Sbjct: 12792 aataataagataacataaaaa 12772
>gb|AC005695.1|AC005695 Homo sapiens chromosome 17, clone hRPK.85_B_7, complete sequence Length = 173717 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 94 aaggaaatgtttgacatttca 114 ||||||||||||||||||||| Sbjct: 120162 aaggaaatgtttgacatttca 120182
>gb|AC116146.14| Mus musculus chromosome 7, clone RP24-168I21, complete sequence Length = 130931 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 132 caggggtgggtgggttggag 151 |||||||||||||||||||| Sbjct: 68258 caggggtgggtgggttggag 68239
>ref|XM_588225.2| PREDICTED: Bos taurus similar to olfactory receptor Olr1242 (LOC510984), mRNA Length = 933 Score = 40.1 bits (20), Expect = 6.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 54 agataacataaaaacagaagaagtagag 81 |||| ||| ||||||||||||||||||| Sbjct: 328 agatgacaaaaaaacagaagaagtagag 301
>gb|AC100427.25| Mus musculus chromosome 10, clone RP23-136J15, complete sequence Length = 206339 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 118 gtttcacgtttcaccagggg 137 |||||||||||||||||||| Sbjct: 46325 gtttcacgtttcaccagggg 46344
>gb|AC118249.11| Mus musculus chromosome 19, clone RP23-397G23, complete sequence Length = 224129 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 130 accaggggtgggtgggttgg 149 |||||||||||||||||||| Sbjct: 106871 accaggggtgggtgggttgg 106890
>gb|AY310323.1| Streptomyces sp. FR-008 heptaene macrolide complex synthesis gene cluster, complete sequence Length = 138203 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 313 cacctctgcggcccgtgccc 332 |||||||||||||||||||| Sbjct: 62687 cacctctgcggcccgtgccc 62668 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 349 cacctctgcggcccgtgccc 368 |||||||||||||||||||| Sbjct: 62687 cacctctgcggcccgtgccc 62668
>gb|AC122241.4| Mus musculus BAC clone RP23-146M20 from chromosome 15, complete sequence Length = 195429 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 47 aataataagataacataaaa 66 |||||||||||||||||||| Sbjct: 72370 aataataagataacataaaa 72389
>gb|AC073590.5| Mus musculus chromosome 12 clone RP23-206K17, complete sequence Length = 204107 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 132 caggggtgggtgggttggag 151 |||||||||||||||||||| Sbjct: 100767 caggggtgggtgggttggag 100786
>emb|AL590702.17| Human DNA sequence from clone RP13-371D18 on chromosome 6 Contains the 5' end of a novel gene (CD001, BM-021, FLJ11240), a nucleophosmin (nucleolar phosphoprotein B23, numatrin) (NPM1) pseudogene, a glyceraldehyde-3-phosphate dehydrogenase (GAPD) pseudogene and a CpG island, complete sequence Length = 113587 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 133 aggggtgggtgggttggagt 152 |||||||||||||||||||| Sbjct: 98302 aggggtgggtgggttggagt 98283
>emb|AL358972.13| Human DNA sequence from clone RP11-347L18 on chromosome 6 Contains a novel gene, complete sequence Length = 172606 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 53 aagataacataaaaacagaa 72 |||||||||||||||||||| Sbjct: 55810 aagataacataaaaacagaa 55791
>emb|AL162426.20| Human DNA sequence from clone RP11-56D16 on chromosome 9 Contains the STXBP1 gene for syntaxin binding protein 1 (UNC18,hUNC18,MUNC18-1), two novel genes, a novel gene (LOC138428), the gene for a novel protien (LOC286207), the gene for anovel protein (FLJ32780), the TOR2A gene for torsin family 2, member A (FLJ14771), the 3' end of the SH2D3C gene for SH2 domain containing 3C (CHAT,NSP3) and five CpG islands, complete sequence Length = 163338 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 223 gtgtgccagcactctgcctg 242 |||||||||||||||||||| Sbjct: 12669 gtgtgccagcactctgcctg 12650
>emb|AL158195.11| Human DNA sequence from clone RP11-48H1 on chromosome 13 Contains part of the DLEU1 gene for deleted in lymphocytic leukemia 1 (BCMS LEU1), complete sequence Length = 123209 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 198 aaagttatcttcttccctgc 217 |||||||||||||||||||| Sbjct: 22448 aaagttatcttcttccctgc 22467
>emb|AL109842.7|HSDJ726A1 Human DNA sequence from clone RP4-726A1 on chromosome 6q22.2-23.1 Contains part of the TCBA1 gene for T-cell lymphoma breakpoint associated target 1, complete sequence Length = 120998 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 56 ataacataaaaacagaagaa 75 |||||||||||||||||||| Sbjct: 36704 ataacataaaaacagaagaa 36685
>gb|AC166356.1| Mus musculus BAC clone RP23-410F8 from chromosome 15, complete sequence Length = 165082 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 47 aataataagataacataaaa 66 |||||||||||||||||||| Sbjct: 111519 aataataagataacataaaa 111538
>emb|BX088700.1|CNS09S4S DNA centromeric region sequence from BAC DP26B06, DP34F04, DP16D11, DP09G08, DP35C12 of chromosome 5 of Podospora anserina Length = 322194 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 370 tgtcaaaccttcctcctctcctgt 393 |||||||||||||||||| ||||| Sbjct: 202865 tgtcaaaccttcctcctcccctgt 202888
>emb|CR759811.8| Zebrafish DNA sequence from clone CH211-190M18 in linkage group 13, complete sequence Length = 132853 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 46 taataataagataacataaa 65 |||||||||||||||||||| Sbjct: 13576 taataataagataacataaa 13557
>emb|AL929547.13| Mouse DNA sequence from clone RP23-180L23 on chromosome 11 Contains part of a novel gene and a CpG island, complete sequence Length = 218414 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 132 caggggtgggtgggttggag 151 |||||||||||||||||||| Sbjct: 20781 caggggtgggtgggttggag 20762
>ref|NM_001001020.1| Rattus norvegicus olfactory receptor 1249 (predicted) (Olr1249_predicted), mRNA Length = 933 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 63 aaaaacagaagaagtagagt 82 |||||||||||||||||||| Sbjct: 319 aaaaacagaagaagtagagt 300
>ref|NM_001000457.1| Rattus norvegicus olfactory receptor 1265 (predicted) (Olr1265_predicted), mRNA Length = 954 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 63 aaaaacagaagaagtagagt 82 |||||||||||||||||||| Sbjct: 337 aaaaacagaagaagtagagt 318
>ref|NM_001000802.1| Rattus norvegicus olfactory receptor 1266 (predicted) (Olr1266_predicted), mRNA Length = 936 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 63 aaaaacagaagaagtagagt 82 |||||||||||||||||||| Sbjct: 319 aaaaacagaagaagtagagt 300
>ref|NM_001000808.1| Rattus norvegicus olfactory receptor 1246 (predicted) (Olr1246_predicted), mRNA Length = 933 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 63 aaaaacagaagaagtagagt 82 |||||||||||||||||||| Sbjct: 319 aaaaacagaagaagtagagt 300
>ref|NM_001000807.1| Rattus norvegicus olfactory receptor 1247 (predicted) (Olr1247_predicted), mRNA Length = 921 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 63 aaaaacagaagaagtagagt 82 |||||||||||||||||||| Sbjct: 307 aaaaacagaagaagtagagt 288
>gb|AC010107.7| Drosophila melanogaster 3L BAC RP98-2B1 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 181063 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 98 aaatgtttgacatttcacta 117 |||||||||||||||||||| Sbjct: 98394 aaatgtttgacatttcacta 98375
>gb|AC091220.3| Drosophila melanogaster 3L BAC RP98-7E7 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 179838 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 98 aaatgtttgacatttcacta 117 |||||||||||||||||||| Sbjct: 11718 aaatgtttgacatttcacta 11737
>gb|AC092349.3| Homo sapiens chromosome 5 clone RP11-287J9, complete sequence Length = 144155 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 187 agtcatcaccgaaagttatcttct 210 |||| ||||||||||||||||||| Sbjct: 118113 agtcttcaccgaaagttatcttct 118136
>gb|AF440620.1|AF440620 Homo sapiens 13q14 chronic lymphocytic leukemia suppressor locus section 2 of 2 Length = 440917 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 198 aaagttatcttcttccctgc 217 |||||||||||||||||||| Sbjct: 101157 aaagttatcttcttccctgc 101176
>gb|AC158242.4| Pan troglodytes BAC clone CH251-354C10 from chromosome unknown, complete sequence Length = 182200 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 79 gagtctccaggcaaaaagga 98 |||||||||||||||||||| Sbjct: 164133 gagtctccaggcaaaaagga 164114
>gb|AC005949.12| Homo sapiens chromosome 13 clone 468p13 map 13q14, complete sequence Length = 143107 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 198 aaagttatcttcttccctgc 217 |||||||||||||||||||| Sbjct: 118638 aaagttatcttcttccctgc 118619
>gb|AC005948.14| Homo sapiens chromosome 13 clone 460f10 map 13q14, complete sequence Length = 154065 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 198 aaagttatcttcttccctgc 217 |||||||||||||||||||| Sbjct: 68795 aaagttatcttcttccctgc 68776
>gb|AC021019.5|AC021019 Homo sapiens BAC clone RP11-496J3 from 6, complete sequence Length = 220216 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 133 aggggtgggtgggttggagt 152 |||||||||||||||||||| Sbjct: 220168 aggggtgggtgggttggagt 220149
>emb|BX470178.13| Zebrafish DNA sequence from clone CH211-285K18, complete sequence Length = 166954 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 46 taataataagataacataaaaaca 69 |||||||||||||| ||||||||| Sbjct: 33768 taataataagataaaataaaaaca 33791
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 427 taggcttggcttcatcaaca 446 |||||||||||||||||||| Sbjct: 5416546 taggcttggcttcatcaaca 5416565
>gb|AC068919.4| Homo sapiens BAC clone RP11-340I19 from 2, complete sequence Length = 164350 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 126 tttcaccaggggtgggtgggttgg 149 |||| ||||||||||||||||||| Sbjct: 20416 tttccccaggggtgggtgggttgg 20439
>gb|AC156450.2| Volvox carteri clone JGIAOBO-41M18, complete sequence Length = 36468 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 294 ccccggccgcctcttgccccacct 317 ||||||||||||||| |||||||| Sbjct: 1202 ccccggccgcctcttcccccacct 1179
>dbj|AP005441.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0056O06 Length = 151038 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 427 taggcttggcttcatcaaca 446 |||||||||||||||||||| Sbjct: 86357 taggcttggcttcatcaaca 86376
>emb|AJ234677.1|HVU234677 Hordeum vulgare genomic DNA fragment; clone MWG0957.uni Length = 345 Score = 40.1 bits (20), Expect = 6.7 Identities = 32/36 (88%) Strand = Plus / Minus Query: 207 ttcttccctgcactaggtgtgccagcactctgcctg 242 ||||| ||||| |||| ||| ||||||||||||||| Sbjct: 339 ttcttacctgcgctagctgtaccagcactctgcctg 304
>emb|AM180252.1| Lawsonia intracellularis PHE/MN1-00 Length = 1457619 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 78 agagtctccaggcaaaaagg 97 |||||||||||||||||||| Sbjct: 885592 agagtctccaggcaaaaagg 885611
>tpe|BN000872.1| TPA: TPA_exp: Mus musculus immunoglobulin heavy chain variable region locus, strain C57BL/6 Length = 2500000 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 132 caggggtgggtgggttggag 151 |||||||||||||||||||| Sbjct: 1736281 caggggtgggtgggttggag 1736262
>gb|AE003551.3| Drosophila melanogaster chromosome 3L, section 34 of 83 of the complete sequence Length = 285860 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 98 aaatgtttgacatttcacta 117 |||||||||||||||||||| Sbjct: 196300 aaatgtttgacatttcacta 196319
>gb|AC119802.43| Mus musculus chromosome 3, clone RP23-64P1, complete sequence Length = 231972 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 82 tctccaggcaaaaaggaaat 101 |||||||||||||||||||| Sbjct: 196663 tctccaggcaaaaaggaaat 196682
>emb|BX936450.6| Zebrafish DNA sequence from clone CH211-232I12 in linkage group 17, complete sequence Length = 167918 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 50 aataagataacataaaaaca 69 |||||||||||||||||||| Sbjct: 115342 aataagataacataaaaaca 115361
>gb|U56090.1|NCU56090 Neurospora crassa G protein alpha subunit (gna-1) gene, complete cds Length = 5584 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 63 aaaaacagaagaagtagagt 82 |||||||||||||||||||| Sbjct: 4392 aaaaacagaagaagtagagt 4373
>emb|AL611927.21| Mouse DNA sequence from clone RP23-445E20 on chromosome 4, complete sequence Length = 111802 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 138 tgggtgggttggagtttctg 157 |||||||||||||||||||| Sbjct: 108747 tgggtgggttggagtttctg 108766
>emb|AL683866.8| Mouse DNA sequence from clone RP23-457C13 on chromosome X, complete sequence Length = 178184 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 56 ataacataaaaacagaagaa 75 |||||||||||||||||||| Sbjct: 76017 ataacataaaaacagaagaa 75998 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,952,293 Number of Sequences: 3902068 Number of extensions: 4952293 Number of successful extensions: 106394 Number of sequences better than 10.0: 68 Number of HSP's better than 10.0 without gapping: 68 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 106183 Number of HSP's gapped (non-prelim): 211 length of query: 492 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 470 effective length of database: 17,147,199,772 effective search space: 8059183892840 effective search space used: 8059183892840 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
