ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbasd20c11 |
|---|---|
| Clone Library Name | barley_pub |
>DFRA_MAIZE (P51108) Dihydroflavonol-4-reductase (EC 1.1.1.219) (DFR)| (Dihydrokaempferol 4-reductase) Length = 357 Score = 35.4 bits (80), Expect = 0.096 Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 5/72 (6%) Frame = -3 Query: 483 LLRDLFPYYPITDK---CEDDGKPMVKPYRFSNQRLRDLGLDF--TPLKESLHETVLSLQ 319 +LRD +P Y + + +DD ++P RFS+++L+DLG F L++ + + Q Sbjct: 271 MLRDRYPEYDVPQRFPGIQDD----LQPVRFSSKKLQDLGFTFRYKTLEDMFDAAIRTCQ 326 Query: 318 QQGHLDLPVVPG 283 ++G + L G Sbjct: 327 EKGLIPLATAAG 338
>SFH1_YEAST (Q06168) Chromatin structure remodeling complex protein SFH1 (SNF5| homolog 1) Length = 426 Score = 33.1 bits (74), Expect = 0.48 Identities = 21/48 (43%), Positives = 30/48 (62%), Gaps = 6/48 (12%) Frame = -3 Query: 411 PYRFSNQRLRDLGL--DFTPL-KESLHETVLSLQQ---QGHLDLPVVP 286 P RF+ ++DLGL +F PL +SLHET+L +++ GHL VP Sbjct: 307 PERFATSIVQDLGLTREFIPLISQSLHETILKIKKDWVDGHLIQDHVP 354
>EDG7_HUMAN (Q9UBY5) Lysophosphatidic acid receptor Edg-7 (LPA receptor 3)| (LPA-3) Length = 353 Score = 30.0 bits (66), Expect = 4.0 Identities = 13/26 (50%), Positives = 17/26 (65%) Frame = -3 Query: 201 LHWWNINNLCPFTIMIQEYLISYVYV 124 L +W ++NL F IM+ YL YVYV Sbjct: 188 LVFWTVSNLMAFLIMVVVYLRIYVYV 213
>SLY1_DROME (Q24179) Sly1 protein homolog| Length = 657 Score = 30.0 bits (66), Expect = 4.0 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 1/61 (1%) Frame = +1 Query: 334 RLVQTLLQWSEVQPQVPEPLVGEPVWLDHRLAVILTLVGNGIVWEEVS-KQLEKVGAVXH 510 R + + Q + Q P+ L EPVW +I VG I+ +S K+L ++G H Sbjct: 7 RQINAIKQMLNLNSQQPKALAAEPVW----KILIYDRVGQDIISPIISIKELRELGVTLH 62 Query: 511 V 513 V Sbjct: 63 V 63
>PPDK_FLATR (P22221) Pyruvate, phosphate dikinase, chloroplast precursor (EC| 2.7.9.1) (Pyruvate, orthophosphate dikinase) Length = 953 Score = 30.0 bits (66), Expect = 4.0 Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 1/73 (1%) Frame = +1 Query: 298 QIQVTLLLQG*HRLVQTLLQWSEVQPQVPEPLVGEPVWLDHRLAVILTLVGNGIVWEEVS 477 ++QV + Q V Q V P++ PLVG P L H+++VI + N V+ E+ Sbjct: 761 EMQVRAIFQA---AVSMTNQGVTVIPEIMVPLVGTPQELRHQISVIRGVAAN--VFAEMG 815 Query: 478 KQLE-KVGAVXHV 513 LE KVG + + Sbjct: 816 VTLEYKVGTMIEI 828
>PPDK_FLABI (Q39735) Pyruvate, phosphate dikinase, chloroplast precursor (EC| 2.7.9.1) (Pyruvate, orthophosphate dikinase) (Cold-sensitive pyruvate, orthophosphate dikinase) Length = 953 Score = 30.0 bits (66), Expect = 4.0 Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 1/73 (1%) Frame = +1 Query: 298 QIQVTLLLQG*HRLVQTLLQWSEVQPQVPEPLVGEPVWLDHRLAVILTLVGNGIVWEEVS 477 ++QV + Q V Q V P++ PLVG P L H+++VI + N V+ E+ Sbjct: 761 EMQVRAIFQA---AVSMTNQGVTVIPEIMVPLVGTPQELRHQISVIRGVAAN--VFAEMG 815 Query: 478 KQLE-KVGAVXHV 513 LE KVG + + Sbjct: 816 VTLEYKVGTMIEI 828
>ATG4_CRYNE (Q5K9L9) Cysteine protease ATG4 (EC 3.4.22.-) (Autophagy-related| protein 4) Length = 1193 Score = 29.3 bits (64), Expect = 6.9 Identities = 19/71 (26%), Positives = 33/71 (46%) Frame = -1 Query: 449 PTSVRMTASRWSSHTGSPTRGSGTWGWTSLH*RRVCTRRCYPCSSRVTWICLWFQGQSVH 270 P+S+R+T ++ + GSG WGW ++ +S W C+ GQS+ Sbjct: 531 PSSLRVTTPTAAAQQSAS--GSGGWGW---------SKEERGLTSDAGWGCMLRTGQSLL 579 Query: 269 ASKPTYLHDGR 237 + ++H GR Sbjct: 580 VNALIHIHLGR 590
>PPDK_FLABR (Q39734) Pyruvate, phosphate dikinase, chloroplast precursor (EC| 2.7.9.1) (Pyruvate, orthophosphate dikinase) (Cold-sensitive pyruvate, orthophosphate dikinase) Length = 955 Score = 29.3 bits (64), Expect = 6.9 Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 1/50 (2%) Frame = +1 Query: 367 VQPQVPEPLVGEPVWLDHRLAVILTLVGNGIVWEEVSKQLE-KVGAVXHV 513 V P++ PLVG P L H++ VI + N V+ E+ LE KVG + + Sbjct: 783 VIPEIMVPLVGTPQELRHQIGVIRGVAAN--VFAEMGLTLEYKVGTMIEI 830
>METE_BORPE (Q7VVU3) 5-methyltetrahydropteroyltriglutamate--homocysteine| methyltransferase (EC 2.1.1.14) (Methionine synthase, vitamin-B12 independent isozyme) (Cobalamin-independent methionine synthase) Length = 764 Score = 28.9 bits (63), Expect = 9.0 Identities = 14/32 (43%), Positives = 16/32 (50%) Frame = -3 Query: 375 GLDFTPLKESLHETVLSLQQQGHLDLPVVPGP 280 G F +E L E V Q GH PV+PGP Sbjct: 133 GQTFRVAREDLFEQVKEAQALGHRVKPVIPGP 164
>METE_BORPA (Q7W791) 5-methyltetrahydropteroyltriglutamate--homocysteine| methyltransferase (EC 2.1.1.14) (Methionine synthase, vitamin-B12 independent isozyme) (Cobalamin-independent methionine synthase) Length = 764 Score = 28.9 bits (63), Expect = 9.0 Identities = 14/32 (43%), Positives = 16/32 (50%) Frame = -3 Query: 375 GLDFTPLKESLHETVLSLQQQGHLDLPVVPGP 280 G F +E L E V Q GH PV+PGP Sbjct: 133 GQTFRVAREDLFEQVKEAQALGHRVKPVIPGP 164
>METE_BORBR (Q7WKM7) 5-methyltetrahydropteroyltriglutamate--homocysteine| methyltransferase (EC 2.1.1.14) (Methionine synthase, vitamin-B12 independent isozyme) (Cobalamin-independent methionine synthase) Length = 764 Score = 28.9 bits (63), Expect = 9.0 Identities = 14/32 (43%), Positives = 16/32 (50%) Frame = -3 Query: 375 GLDFTPLKESLHETVLSLQQQGHLDLPVVPGP 280 G F +E L E V Q GH PV+PGP Sbjct: 133 GQTFRVAREDLFEQVKEAQALGHRVKPVIPGP 164 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 77,952,850 Number of Sequences: 219361 Number of extensions: 1641398 Number of successful extensions: 4324 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 4114 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4316 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3985467738 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
