Clone Name | rbasd20c03 |
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Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | POL1_BAMMN (P90245) Genome polyprotein 1 [Contains: Protein P3; ... | 30 | 5.9 | 2 | PO4F1_HUMAN (Q01851) POU domain, class 4, transcription factor 1... | 30 | 7.7 | 3 | PO4F1_MOUSE (P17208) POU domain, class 4, transcription factor 1... | 30 | 7.7 |
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>POL1_BAMMN (P90245) Genome polyprotein 1 [Contains: Protein P3; 6 kDa protein| 1 (6K1); Cytoplasmic inclusion protein (CI); 6 kDa protein 2 (6K2); Viral genome-linked protein (VPg); Nuclear inclusion protein A (EC 3.4.22.44) (NI-a) (NIa) (NIa-pro); Nuclea Length = 2258 Score = 30.0 bits (66), Expect = 5.9 Identities = 11/25 (44%), Positives = 13/25 (52%) Frame = -1 Query: 631 WRRCIIWQSWRVWGLWGPGRWCWKS 557 W CI W + LW P RWC+ S Sbjct: 214 WCNCI----WLLCSLWSPARWCFNS 234
>PO4F1_HUMAN (Q01851) POU domain, class 4, transcription factor 1| (Brain-specific homeobox/POU domain protein 3A) (Brn-3A) (Oct-T1) (Homeobox/POU domain protein RDC-1) Length = 423 Score = 29.6 bits (65), Expect = 7.7 Identities = 12/30 (40%), Positives = 18/30 (60%) Frame = +3 Query: 324 PNALVHTMNIITASSTEQP*AAYHHNRCHN 413 P+A HTMN + +ST A+HH+ H+ Sbjct: 78 PDATYHTMNSVPCTSTSTVPLAHHHHHHHH 107
>PO4F1_MOUSE (P17208) POU domain, class 4, transcription factor 1| (Brain-specific homeobox/POU domain protein 3A) (Brn-3A) (Brn-3.0) Length = 421 Score = 29.6 bits (65), Expect = 7.7 Identities = 12/30 (40%), Positives = 18/30 (60%) Frame = +3 Query: 324 PNALVHTMNIITASSTEQP*AAYHHNRCHN 413 P+A HTMN + +ST A+HH+ H+ Sbjct: 78 PDATYHTMNSVPCTSTSTVPLAHHHHHHHH 107 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 72,440,671 Number of Sequences: 219361 Number of extensions: 1319299 Number of successful extensions: 2651 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 2584 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2643 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5824436538 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)