>POL1_BAMMN (P90245) Genome polyprotein 1 [Contains: Protein P3; 6 kDa protein|
           1 (6K1); Cytoplasmic inclusion protein (CI); 6 kDa
           protein 2 (6K2); Viral genome-linked protein (VPg);
           Nuclear inclusion protein A (EC 3.4.22.44) (NI-a) (NIa)
           (NIa-pro); Nuclea
          Length = 2258

 Score = 30.0 bits (66), Expect = 5.9
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -1

Query: 631 WRRCIIWQSWRVWGLWGPGRWCWKS 557
           W  CI    W +  LW P RWC+ S
Sbjct: 214 WCNCI----WLLCSLWSPARWCFNS 234

>PO4F1_HUMAN (Q01851) POU domain, class 4, transcription factor 1|
           (Brain-specific homeobox/POU domain protein 3A) (Brn-3A)
           (Oct-T1) (Homeobox/POU domain protein RDC-1)
          Length = 423

 Score = 29.6 bits (65), Expect = 7.7
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 324 PNALVHTMNIITASSTEQP*AAYHHNRCHN 413
           P+A  HTMN +  +ST     A+HH+  H+
Sbjct: 78  PDATYHTMNSVPCTSTSTVPLAHHHHHHHH 107

>PO4F1_MOUSE (P17208) POU domain, class 4, transcription factor 1|
           (Brain-specific homeobox/POU domain protein 3A) (Brn-3A)
           (Brn-3.0)
          Length = 421

 Score = 29.6 bits (65), Expect = 7.7
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 324 PNALVHTMNIITASSTEQP*AAYHHNRCHN 413
           P+A  HTMN +  +ST     A+HH+  H+
Sbjct: 78  PDATYHTMNSVPCTSTSTVPLAHHHHHHHH 107


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,440,671
Number of Sequences: 219361
Number of extensions: 1319299
Number of successful extensions: 2651
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2584
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2643
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5824436538
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)