Clone Information

BLAST Search Result

Clone Name	rbasd20c03
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	dbj\|AP008216.1\| Oryza sativa (japonica cultivar-group) genomic D...	228	2e-56
2	gb\|AC026815.8\|AC026815 Oryza sativa chromosome 10 BAC OSJNBa0079...	228	2e-56
3	dbj\|AK120962.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	228	2e-56
4	gb\|AE016959.3\| Oryza sativa (japonica cultivar-group) chromosome...	228	2e-56
5	ref\|NM_196957.1\| Oryza sativa (japonica cultivar-group) putative...	226	7e-56
6	dbj\|AK059172.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	167	6e-38
7	gb\|AY105987.1\| Zea mays PCO101966 mRNA sequence	105	2e-19
8	gb\|BT018887.1\| Zea mays clone EL01T0205G05.d mRNA sequence	80	1e-11
9	gb\|AC131212.6\| Homo sapiens 12 BAC RP13-554M15 (Rowsell Park Can...	50	0.009
10	dbj\|AK062625.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	48	0.035
11	gb\|AC097832.7\| Rattus norvegicus 11 BAC CH230-68C19 (Children's ...	42	2.2
12	gb\|AE002128.1\| Ureaplasma parvum serovar 3 str. ATCC 700970 sect...	42	2.2
13	emb\|AL731600.3\|OSJN00243 Oryza sativa genomic DNA, chromosome 4,...	42	2.2
14	dbj\|AP008210.1\| Oryza sativa (japonica cultivar-group) genomic D...	42	2.2
15	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	42	2.2
16	dbj\|AP003369.2\| Oryza sativa (japonica cultivar-group) genomic D...	42	2.2
17	dbj\|AP002870.1\| Oryza sativa (japonica cultivar-group) genomic D...	42	2.2
18	emb\|AL935046.6\| Zebrafish DNA sequence from clone CH211-171K3, c...	42	2.2
19	emb\|AJ311784.1\|CNO311784 Cymodocea nodosa CCA4 gene for P-type A...	42	2.2
20	gb\|CP000148.1\| Geobacter metallireducens GS-15, complete genome	40	8.6
21	gb\|AE017141.1\| Yersinia pestis biovar Medievalis str. 91001 sect...	40	8.6
22	gb\|AE017355.1\| Bacillus thuringiensis serovar konkukian str. 97-...	40	8.6
23	gb\|AE009952.1\| Yersinia pestis KIM, complete genome	40	8.6
24	gb\|AC122822.3\| Mus musculus BAC clone RP23-202A13 from 9, comple...	40	8.6
25	gb\|AC144479.1\| Pan troglodytes BAC clone RP43-126P12 from 7, com...	40	8.6
26	emb\|BX936398.1\| Yersinia pseudotuberculosis IP32953 genome, comp...	40	8.6
27	gb\|AC154740.2\| Mus musculus BAC clone RP23-118I16 from chromosom...	40	8.6
28	emb\|AJ414142.1\| Yersinia pestis strain CO92 complete genome; seg...	40	8.6
29	emb\|CR384103.7\| Zebrafish DNA sequence from clone DKEY-215K6 in ...	40	8.6
30	gb\|AC092997.6\| Homo sapiens 3 BAC RP11-711L14 (Roswell Park Canc...	40	8.6
31	gb\|AF101309.2\| Caenorhabditis elegans fosmid H24G06, complete se...	40	8.6
32	gb\|AC100828.2\| Homo sapiens chromosome 15, clone RP11-184D12, co...	40	8.6
33	gb\|AC068867.9\| Homo sapiens chromosome 15, clone RP11-702M1, com...	40	8.6
34	gb\|AC090815.3\| Homo sapiens chromosome 15, clone RP11-1078O1, co...	40	8.6
35	gb\|AC016138.8\| Homo sapiens 3 BAC RP11-91B3 (Roswell Park Cancer...	40	8.6
36	emb\|AL590763.2\|HSXDPB Homo sapiens chromosome X sequence from 6...	40	8.6
37	dbj\|AP002035.1\| Arabidopsis thaliana genomic DNA, chromosome 3, ...	40	8.6
38	emb\|CR388140.8\| Zebrafish DNA sequence from clone CH211-190G11, ...	40	8.6
39	gb\|AC116406.13\| Mus musculus chromosome 3, clone RP23-427K12, co...	40	8.6
40	gb\|DQ163882.1\| Candidatus Hamiltonella defensa clone P210029 gen...	40	8.6
41	gb\|DQ163179.1\| Candidatus Hamiltonella defensa clone P030012 gen...	40	8.6
42	gb\|DQ163118.1\| Candidatus Hamiltonella defensa clone P010063 gen...	40	8.6
43	gb\|AC159813.2\| Mus musculus BAC clone RP23-386L9 from chromosome...	40	8.6
44	gb\|AC171176.1\| Mus musculus chromosome 3, clone wi1-2063J20, com...	40	8.6

>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score =  228 bits (115), Expect = 2e-56
 Identities = 234/273 (85%), Gaps = 3/273 (1%)
 Strand = Plus / Minus

                                                                            
Query: 359      ggcctcttctactgagcaaccctaggctgcataccaccataaccgctgccataatttgat 418
                |||||| | ||||||||||||||||| |||| |||||||||||| |||||||||||||||
Sbjct: 16917908 ggcctcatttactgagcaaccctaggttgcacaccaccataaccactgccataatttgat 16917849

                                                                            
Query: 419      tggccctcagaagctccattgactgaaccaccaaatcctccgccttgtgaaggatcagcc 478
                ||||| |||||  |||||||||||||| | ||||| ||||| ||||||||||||||||||
Sbjct: 16917848 tggccttcagacactccattgactgaagccccaaaccctccaccttgtgaaggatcagcc 16917789

                                                                            
Query: 479      cacgcatttggatatccagagtttccattcccacttccatatccagcagcaccataccca 538
                || ||||||||||| |||||    |||||||| |||||||| |   ||||||||||||||
Sbjct: 16917788 caagcatttggataaccagaaccgccattcccgcttccatagc---cagcaccataccca 16917732

                                                                            
Query: 539      gaggctgccccagtagcaggatttccagcaccatctccccggcccccataagccccatac 598
                ||  |  | |||| ||| ||||| ||||||||||||||||  || |||||| ||||||| 
Sbjct: 16917731 gatccaccgccagcagctggattgccagcaccatctccccttcctccataacccccatat 16917672

                                                 
Query: 599      cctccatgattgccatatgatgcatctcctcca 631
                || |||||||| ||||| |||||||||||||||
Sbjct: 16917671 ccaccatgattaccatacgatgcatctcctcca 16917639



 Score =  147 bits (74), Expect = 5e-32
 Identities = 151/169 (89%), Gaps = 7/169 (4%)
 Strand = Plus / Minus

                                                                            
Query: 8        atatgattctgtagaatga-gatacaactagataatttg--gtcc-taggcagtgaagct 63
                ||||||||||||||||| | | |||||||||||| ||||  |||| || | |||||||||
Sbjct: 16918275 atatgattctgtagaataaaggtacaactagatagtttgttgtccataagtagtgaagct 16918216

                                                                            
Query: 64       actctagctttaaactagagaagaagcaacctgaaactccactcatgacaaagcacaccg 123
                ||||||||||||||||||||| ||||||| |||||| |||||||||||||||||||||||
Sbjct: 16918215 actctagctttaaactagagacgaagcaa-ctgaaattccactcatgacaaagcacaccg 16918157

                                                                 
Query: 124      aaggataa-gctaaacataaataaagcattatg-aagatacagctactc 170
                |  ||||| ||||||| |||||||||||||| | |||||||||||||||
Sbjct: 16918156 acagataaggctaaacttaaataaagcattacgcaagatacagctactc 16918108



 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 47/51 (92%)
 Strand = Plus / Minus

                                                                   
Query: 205      taagccacgaaaggatcaagcattccaaccaggagaaatactgatttaacc 255
                |||||| | ||||| ||||||||||||||| ||||||||||||||||||||
Sbjct: 16918065 taagccgcaaaaggttcaagcattccaacccggagaaatactgatttaacc 16918015

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>gb|AC026815.8|AC026815 Oryza sativa chromosome 10 BAC OSJNBa0079L16 genomic sequence, complete
              sequence
          Length = 147452

 Score =  228 bits (115), Expect = 2e-56
 Identities = 234/273 (85%), Gaps = 3/273 (1%)
 Strand = Plus / Minus

                                                                          
Query: 359    ggcctcttctactgagcaaccctaggctgcataccaccataaccgctgccataatttgat 418
              |||||| | ||||||||||||||||| |||| |||||||||||| |||||||||||||||
Sbjct: 102360 ggcctcatttactgagcaaccctaggttgcacaccaccataaccactgccataatttgat 102301

                                                                          
Query: 419    tggccctcagaagctccattgactgaaccaccaaatcctccgccttgtgaaggatcagcc 478
              ||||| |||||  |||||||||||||| | ||||| ||||| ||||||||||||||||||
Sbjct: 102300 tggccttcagacactccattgactgaagccccaaaccctccaccttgtgaaggatcagcc 102241

                                                                          
Query: 479    cacgcatttggatatccagagtttccattcccacttccatatccagcagcaccataccca 538
              || ||||||||||| |||||    |||||||| |||||||| |   ||||||||||||||
Sbjct: 102240 caagcatttggataaccagaaccgccattcccgcttccatagc---cagcaccataccca 102184

                                                                          
Query: 539    gaggctgccccagtagcaggatttccagcaccatctccccggcccccataagccccatac 598
              ||  |  | |||| ||| ||||| ||||||||||||||||  || |||||| ||||||| 
Sbjct: 102183 gatccaccgccagcagctggattgccagcaccatctccccttcctccataacccccatat 102124

                                               
Query: 599    cctccatgattgccatatgatgcatctcctcca 631
              || |||||||| ||||| |||||||||||||||
Sbjct: 102123 ccaccatgattaccatacgatgcatctcctcca 102091



 Score =  147 bits (74), Expect = 5e-32
 Identities = 151/169 (89%), Gaps = 7/169 (4%)
 Strand = Plus / Minus

                                                                          
Query: 8      atatgattctgtagaatga-gatacaactagataatttg--gtcc-taggcagtgaagct 63
              ||||||||||||||||| | | |||||||||||| ||||  |||| || | |||||||||
Sbjct: 102727 atatgattctgtagaataaaggtacaactagatagtttgttgtccataagtagtgaagct 102668

                                                                          
Query: 64     actctagctttaaactagagaagaagcaacctgaaactccactcatgacaaagcacaccg 123
              ||||||||||||||||||||| ||||||| |||||| |||||||||||||||||||||||
Sbjct: 102667 actctagctttaaactagagacgaagcaa-ctgaaattccactcatgacaaagcacaccg 102609

                                                               
Query: 124    aaggataa-gctaaacataaataaagcattatg-aagatacagctactc 170
              |  ||||| ||||||| |||||||||||||| | |||||||||||||||
Sbjct: 102608 acagataaggctaaacttaaataaagcattacgcaagatacagctactc 102560



 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 47/51 (92%)
 Strand = Plus / Minus

                                                                 
Query: 205    taagccacgaaaggatcaagcattccaaccaggagaaatactgatttaacc 255
              |||||| | ||||| ||||||||||||||| ||||||||||||||||||||
Sbjct: 102517 taagccgcaaaaggttcaagcattccaacccggagaaatactgatttaacc 102467

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>dbj|AK120962.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023039O15, full
            insert sequence
          Length = 5254

 Score =  228 bits (115), Expect = 2e-56
 Identities = 234/273 (85%), Gaps = 3/273 (1%)
 Strand = Plus / Minus

                                                                        
Query: 359  ggcctcttctactgagcaaccctaggctgcataccaccataaccgctgccataatttgat 418
            |||||| | ||||||||||||||||| |||| |||||||||||| |||||||||||||||
Sbjct: 1533 ggcctcatttactgagcaaccctaggttgcacaccaccataaccactgccataatttgat 1474

                                                                        
Query: 419  tggccctcagaagctccattgactgaaccaccaaatcctccgccttgtgaaggatcagcc 478
            ||||| |||||  |||||||||||||| | ||||| ||||| ||||||||||||||||||
Sbjct: 1473 tggccttcagacactccattgactgaagccccaaaccctccaccttgtgaaggatcagcc 1414

                                                                        
Query: 479  cacgcatttggatatccagagtttccattcccacttccatatccagcagcaccataccca 538
            || ||||||||||| |||||    |||||||| |||||||| |   ||||||||||||||
Sbjct: 1413 caagcatttggataaccagaaccgccattcccgcttccatagc---cagcaccataccca 1357

                                                                        
Query: 539  gaggctgccccagtagcaggatttccagcaccatctccccggcccccataagccccatac 598
            ||  |  | |||| ||| ||||| ||||||||||||||||  || |||||| ||||||| 
Sbjct: 1356 gatccaccgccagcagctggattgccagcaccatctccccttcctccataacccccatat 1297

                                             
Query: 599  cctccatgattgccatatgatgcatctcctcca 631
            || |||||||| ||||| |||||||||||||||
Sbjct: 1296 ccaccatgattaccatacgatgcatctcctcca 1264



 Score =  147 bits (74), Expect = 5e-32
 Identities = 151/169 (89%), Gaps = 7/169 (4%)
 Strand = Plus / Minus

                                                                        
Query: 8    atatgattctgtagaatga-gatacaactagataatttg--gtcc-taggcagtgaagct 63
            ||||||||||||||||| | | |||||||||||| ||||  |||| || | |||||||||
Sbjct: 1900 atatgattctgtagaataaaggtacaactagatagtttgttgtccataagtagtgaagct 1841

                                                                        
Query: 64   actctagctttaaactagagaagaagcaacctgaaactccactcatgacaaagcacaccg 123
            ||||||||||||||||||||| ||||||| |||||| |||||||||||||||||||||||
Sbjct: 1840 actctagctttaaactagagacgaagcaa-ctgaaattccactcatgacaaagcacaccg 1782

                                                             
Query: 124  aaggataa-gctaaacataaataaagcattatg-aagatacagctactc 170
            |  ||||| ||||||| |||||||||||||| | |||||||||||||||
Sbjct: 1781 acagataaggctaaacttaaataaagcattacgcaagatacagctactc 1733



 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 47/51 (92%)
 Strand = Plus / Minus

                                                               
Query: 205  taagccacgaaaggatcaagcattccaaccaggagaaatactgatttaacc 255
            |||||| | ||||| ||||||||||||||| ||||||||||||||||||||
Sbjct: 1690 taagccgcaaaaggttcaagcattccaacccggagaaatactgatttaacc 1640

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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score =  228 bits (115), Expect = 2e-56
 Identities = 234/273 (85%), Gaps = 3/273 (1%)
 Strand = Plus / Minus

                                                                            
Query: 359      ggcctcttctactgagcaaccctaggctgcataccaccataaccgctgccataatttgat 418
                |||||| | ||||||||||||||||| |||| |||||||||||| |||||||||||||||
Sbjct: 16926948 ggcctcatttactgagcaaccctaggttgcacaccaccataaccactgccataatttgat 16926889

                                                                            
Query: 419      tggccctcagaagctccattgactgaaccaccaaatcctccgccttgtgaaggatcagcc 478
                ||||| |||||  |||||||||||||| | ||||| ||||| ||||||||||||||||||
Sbjct: 16926888 tggccttcagacactccattgactgaagccccaaaccctccaccttgtgaaggatcagcc 16926829

                                                                            
Query: 479      cacgcatttggatatccagagtttccattcccacttccatatccagcagcaccataccca 538
                || ||||||||||| |||||    |||||||| |||||||| |   ||||||||||||||
Sbjct: 16926828 caagcatttggataaccagaaccgccattcccgcttccatagc---cagcaccataccca 16926772

                                                                            
Query: 539      gaggctgccccagtagcaggatttccagcaccatctccccggcccccataagccccatac 598
                ||  |  | |||| ||| ||||| ||||||||||||||||  || |||||| ||||||| 
Sbjct: 16926771 gatccaccgccagcagctggattgccagcaccatctccccttcctccataacccccatat 16926712

                                                 
Query: 599      cctccatgattgccatatgatgcatctcctcca 631
                || |||||||| ||||| |||||||||||||||
Sbjct: 16926711 ccaccatgattaccatacgatgcatctcctcca 16926679



 Score =  147 bits (74), Expect = 5e-32
 Identities = 151/169 (89%), Gaps = 7/169 (4%)
 Strand = Plus / Minus

                                                                            
Query: 8        atatgattctgtagaatga-gatacaactagataatttg--gtcc-taggcagtgaagct 63
                ||||||||||||||||| | | |||||||||||| ||||  |||| || | |||||||||
Sbjct: 16927315 atatgattctgtagaataaaggtacaactagatagtttgttgtccataagtagtgaagct 16927256

                                                                            
Query: 64       actctagctttaaactagagaagaagcaacctgaaactccactcatgacaaagcacaccg 123
                ||||||||||||||||||||| ||||||| |||||| |||||||||||||||||||||||
Sbjct: 16927255 actctagctttaaactagagacgaagcaa-ctgaaattccactcatgacaaagcacaccg 16927197

                                                                 
Query: 124      aaggataa-gctaaacataaataaagcattatg-aagatacagctactc 170
                |  ||||| ||||||| |||||||||||||| | |||||||||||||||
Sbjct: 16927196 acagataaggctaaacttaaataaagcattacgcaagatacagctactc 16927148



 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 47/51 (92%)
 Strand = Plus / Minus

                                                                   
Query: 205      taagccacgaaaggatcaagcattccaaccaggagaaatactgatttaacc 255
                |||||| | ||||| ||||||||||||||| ||||||||||||||||||||
Sbjct: 16927105 taagccgcaaaaggttcaagcattccaacccggagaaatactgatttaacc 16927055

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>ref|NM_196957.1| Oryza sativa (japonica cultivar-group) putative RNA-binding protein
            (OSJNBa0079L16.15), mRNA
          Length = 1395

 Score =  226 bits (114), Expect = 7e-56
 Identities = 227/264 (85%), Gaps = 3/264 (1%)
 Strand = Plus / Minus

                                                                        
Query: 368  tactgagcaaccctaggctgcataccaccataaccgctgccataatttgattggccctca 427
            ||||||||||||||||| |||| |||||||||||| |||||||||||||||||||| |||
Sbjct: 1394 tactgagcaaccctaggttgcacaccaccataaccactgccataatttgattggccttca 1335

                                                                        
Query: 428  gaagctccattgactgaaccaccaaatcctccgccttgtgaaggatcagcccacgcattt 487
            ||  |||||||||||||| | ||||| ||||| |||||||||||||||||||| ||||||
Sbjct: 1334 gacactccattgactgaagccccaaaccctccaccttgtgaaggatcagcccaagcattt 1275

                                                                        
Query: 488  ggatatccagagtttccattcccacttccatatccagcagcaccatacccagaggctgcc 547
            ||||| |||||    |||||||| |||||||| |   ||||||||||||||||  |  | 
Sbjct: 1274 ggataaccagaaccgccattcccgcttccatagc---cagcaccatacccagatccaccg 1218

                                                                        
Query: 548  ccagtagcaggatttccagcaccatctccccggcccccataagccccataccctccatga 607
            |||| ||| ||||| ||||||||||||||||  || |||||| ||||||| || ||||||
Sbjct: 1217 ccagcagctggattgccagcaccatctccccttcctccataacccccatatccaccatga 1158

                                    
Query: 608  ttgccatatgatgcatctcctcca 631
            || ||||| |||||||||||||||
Sbjct: 1157 ttaccatacgatgcatctcctcca 1134

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>dbj|AK059172.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-023-F02, full
           insert sequence
          Length = 446

 Score =  167 bits (84), Expect = 6e-38
 Identities = 126/140 (90%)
 Strand = Plus / Minus

                                                                       
Query: 359 ggcctcttctactgagcaaccctaggctgcataccaccataaccgctgccataatttgat 418
           |||||| | ||||||||||||||||| |||| |||||||||||| |||||||||||||||
Sbjct: 155 ggcctcatttactgagcaaccctaggttgcacaccaccataaccactgccataatttgat 96

                                                                       
Query: 419 tggccctcagaagctccattgactgaaccaccaaatcctccgccttgtgaaggatcagcc 478
           ||||| |||||  |||||||||||||| | ||||| ||||| ||||||||||||||||||
Sbjct: 95  tggccttcagacactccattgactgaagccccaaaccctccaccttgtgaaggatcagcc 36

                               
Query: 479 cacgcatttggatatccaga 498
           || ||||||||||| |||||
Sbjct: 35  caagcatttggataaccaga 16



 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 84/93 (90%), Gaps = 3/93 (3%)
 Strand = Plus / Minus

                                                                       
Query: 80  agagaagaagcaacctgaaactccactcatgacaaagcacaccgaaggataa-gctaaac 138
           ||||| |||||||| ||||| ||||||||||||||||||||||||  ||||| |||||||
Sbjct: 446 agagacgaagcaac-tgaaattccactcatgacaaagcacaccgacagataaggctaaac 388

                                            
Query: 139 ataaataaagcattatg-aagatacagctactc 170
            |||||||||||||| | |||||||||||||||
Sbjct: 387 ttaaataaagcattacgcaagatacagctactc 355



 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 47/51 (92%)
 Strand = Plus / Minus

                                                              
Query: 205 taagccacgaaaggatcaagcattccaaccaggagaaatactgatttaacc 255
           |||||| | ||||| ||||||||||||||| ||||||||||||||||||||
Sbjct: 312 taagccgcaaaaggttcaagcattccaacccggagaaatactgatttaacc 262

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>gb|AY105987.1| Zea mays PCO101966 mRNA sequence
          Length = 1005

 Score =  105 bits (53), Expect = 2e-19
 Identities = 113/129 (87%), Gaps = 3/129 (2%)
 Strand = Plus / Minus

                                                                       
Query: 5   aatatatgattctgtagaat-gagatacaactagataatttggtcc-taggcagtgaagc 62
           |||||||||| ||||||||| ||| |||||||||||||||| | || || | ||| ||||
Sbjct: 880 aatatatgat-ctgtagaatagaggtacaactagataattttgcccataagtagtcaagc 822

                                                                       
Query: 63  tactctagctttaaactagagaagaagcaacctgaaactccactcatgacaaagcacacc 122
           |||||||||||  ||||||||| ||||||||||||||||||||||||| |||| ||||| 
Sbjct: 821 tactctagcttataactagagatgaagcaacctgaaactccactcatggcaaaccacaca 762

                    
Query: 123 gaaggataa 131
           || ||||||
Sbjct: 761 gatggataa 753



 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 87/101 (86%), Gaps = 3/101 (2%)
 Strand = Plus / Minus

                                                                       
Query: 156 aagatacagctactcgacaaaatagctacttattgacttaa-gttctagt--taagccac 212
           ||||||| ||||||| |||   ||||||||||||||||  | ||||||||  |||||| |
Sbjct: 719 aagatactgctactccacattttagctacttattgactagacgttctagtagtaagccgc 660

                                                    
Query: 213 gaaaggatcaagcattccaaccaggagaaatactgatttaa 253
            ||||||||||||||||||||| ||| ||||||||||||||
Sbjct: 659 taaaggatcaagcattccaacccggataaatactgatttaa 619



 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 110/134 (82%)
 Strand = Plus / Minus

                                                                       
Query: 368 tactgagcaaccctaggctgcataccaccataaccgctgccataatttgattggccctca 427
           |||||||||||||| ||||||| ||  ||||| ||  |||||||| |||| || || |||
Sbjct: 501 tactgagcaaccctgggctgcacactgccatagccagtgccataagttgactgtccttca 442

                                                                       
Query: 428 gaagctccattgactgaaccaccaaatcctccgccttgtgaaggatcagcccacgcattt 487
           | | |||||||||| ||||| |||||||| || ||||| |||||||||  ||| ||| ||
Sbjct: 441 gcacctccattgaccgaaccgccaaatccaccaccttgcgaaggatcactccaagcactt 382

                         
Query: 488 ggatatccagagtt 501
           | ||| ||||||||
Sbjct: 381 gaatagccagagtt 368

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>gb|BT018887.1| Zea mays clone EL01T0205G05.d mRNA sequence
          Length = 1828

 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 49/52 (94%)
 Strand = Plus / Plus

                                                               
Query: 59  aagctactctagctttaaactagagaagaagcaacctgaaactccactcatg 110
           |||||||||||||||  ||||||||| |||||||||||||||||||||||||
Sbjct: 121 aagctactctagcttataactagagatgaagcaacctgaaactccactcatg 172



 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 87/101 (86%), Gaps = 3/101 (2%)
 Strand = Plus / Plus

                                                                       
Query: 156 aagatacagctactcgacaaaatagctacttattgacttaa-gttctagt--taagccac 212
           ||||||| ||||||| |||   ||||||||||||||||  | |||||||   ||||||||
Sbjct: 227 aagatactgctactccacattttagctacttattgactagacgttctagcagtaagccac 286

                                                    
Query: 213 gaaaggatcaagcattccaaccaggagaaatactgatttaa 253
            ||||||||||||||||||||| ||| ||||||||||||||
Sbjct: 287 taaaggatcaagcattccaacccggataaatactgatttaa 327

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>gb|AC131212.6| Homo sapiens 12 BAC RP13-554M15 (Rowsell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 160039

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                      
Query: 563   ccagcaccatctccccggcccccat 587
             |||||||||||||||||||||||||
Sbjct: 12960 ccagcaccatctccccggcccccat 12984

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>dbj|AK062625.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-105-C02, full
           insert sequence
          Length = 595

 Score = 48.1 bits (24), Expect = 0.035
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                       
Query: 228 tccaaccaggagaaatactgatttaacc 255
           ||||||| ||||||||||||||||||||
Sbjct: 102 tccaacccggagaaatactgatttaacc 75

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>gb|AC097832.7| Rattus norvegicus 11 BAC CH230-68C19 (Children's Hospital Oakland
              Research Institute) complete sequence
          Length = 262323

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 566    gcaccatctccccggcccccataag 590
              |||||||||||| ||||||||||||
Sbjct: 112848 gcaccatctccctggcccccataag 112872

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>gb|AE002128.1| Ureaplasma parvum serovar 3 str. ATCC 700970 section 29 of 59 of the
             complete genome
          Length = 10628

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 218   gatcaagcattccaaccagga 238
             |||||||||||||||||||||
Sbjct: 10330 gatcaagcattccaaccagga 10310

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>emb|AL731600.3|OSJN00243 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0055C08,
             complete sequence
          Length = 145670

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 259   agaatggatggtctcttcagg 279
             |||||||||||||||||||||
Sbjct: 68788 agaatggatggtctcttcagg 68768

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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 259      agaatggatggtctcttcagg 279
                |||||||||||||||||||||
Sbjct: 19286956 agaatggatggtctcttcagg 19286936

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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 259      agaatggatggtctcttcagg 279
                |||||||||||||||||||||
Sbjct: 14205742 agaatggatggtctcttcagg 14205762

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>dbj|AP003369.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1102E12
          Length = 155692

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 259    agaatggatggtctcttcagg 279
              |||||||||||||||||||||
Sbjct: 145456 agaatggatggtctcttcagg 145476

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>dbj|AP002870.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
            clone:P0458A05
          Length = 120593

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 259  agaatggatggtctcttcagg 279
            |||||||||||||||||||||
Sbjct: 1432 agaatggatggtctcttcagg 1452

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>emb|AL935046.6| Zebrafish DNA sequence from clone CH211-171K3, complete sequence
          Length = 162239

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 140   taaataaagcattatgaagat 160
             |||||||||||||||||||||
Sbjct: 96918 taaataaagcattatgaagat 96938

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>emb|AJ311784.1|CNO311784 Cymodocea nodosa CCA4 gene for P-type ATPase
          Length = 1129

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 217 ggatcaagcattccaaccagg 237
           |||||||||||||||||||||
Sbjct: 725 ggatcaagcattccaaccagg 705

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>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome
          Length = 3997420

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 551     gtagcaggatttccagcaccatct 574
               |||||||||||||||| |||||||
Sbjct: 2286716 gtagcaggatttccagtaccatct 2286739

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>gb|AE017141.1| Yersinia pestis biovar Medievalis str. 91001 section 15 of 16 of the
              complete genome
          Length = 293371

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 552    tagcaggatttccagcacca 571
              ||||||||||||||||||||
Sbjct: 224184 tagcaggatttccagcacca 224165

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>gb|AE017355.1| Bacillus thuringiensis serovar konkukian str. 97-27, complete genome
          Length = 5237682

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 548     ccagtagcaggatttccagc 567
               ||||||||||||||||||||
Sbjct: 3493899 ccagtagcaggatttccagc 3493880

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>gb|AE009952.1| Yersinia pestis KIM, complete genome
          Length = 4600755

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 552     tagcaggatttccagcacca 571
               ||||||||||||||||||||
Sbjct: 4192117 tagcaggatttccagcacca 4192098

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>gb|AC122822.3| Mus musculus BAC clone RP23-202A13 from 9, complete sequence
          Length = 191414

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 319   gctgcccaaatgcactggttcaca 342
             |||||||| |||||||||||||||
Sbjct: 40168 gctgcccatatgcactggttcaca 40191

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>gb|AC144479.1| Pan troglodytes BAC clone RP43-126P12 from 7, complete sequence
          Length = 211515

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 522    cagcagcaccatacccagaggctg 545
              |||||||||| |||||||||||||
Sbjct: 210717 cagcagcaccttacccagaggctg 210740

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>emb|BX936398.1| Yersinia pseudotuberculosis IP32953 genome, complete sequence
          Length = 4744671

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 552    tagcaggatttccagcacca 571
              ||||||||||||||||||||
Sbjct: 649697 tagcaggatttccagcacca 649716

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>gb|AC154740.2| Mus musculus BAC clone RP23-118I16 from chromosome 9, complete sequence
          Length = 222313

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 319   gctgcccaaatgcactggttcaca 342
             |||||||| |||||||||||||||
Sbjct: 15461 gctgcccatatgcactggttcaca 15438

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>emb|AJ414142.1| Yersinia pestis strain CO92 complete genome; segment 2/20
          Length = 214050

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 552    tagcaggatttccagcacca 571
              ||||||||||||||||||||
Sbjct: 140473 tagcaggatttccagcacca 140492

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>emb|CR384103.7| Zebrafish DNA sequence from clone DKEY-215K6 in linkage group 5,
             complete sequence
          Length = 142808

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 140   taaataaagcattatgaaga 159
             ||||||||||||||||||||
Sbjct: 94038 taaataaagcattatgaaga 94019

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>gb|AC092997.6| Homo sapiens 3 BAC RP11-711L14 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 151059

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 503   ccattcccacttccatatccagca 526
             ||||||||||||||| ||||||||
Sbjct: 94002 ccattcccacttccaaatccagca 94025

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>gb|AF101309.2| Caenorhabditis elegans fosmid H24G06, complete sequence
          Length = 19788

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 57    tgaagctactctagctttaa 76
             ||||||||||||||||||||
Sbjct: 11107 tgaagctactctagctttaa 11088

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>gb|AC100828.2| Homo sapiens chromosome 15, clone RP11-184D12, complete sequence
          Length = 175123

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 546   ccccagtagcaggatttcca 565
             ||||||||||||||||||||
Sbjct: 66668 ccccagtagcaggatttcca 66687

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>gb|AC068867.9| Homo sapiens chromosome 15, clone RP11-702M1, complete sequence
          Length = 179455

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 546    ccccagtagcaggatttcca 565
              ||||||||||||||||||||
Sbjct: 129874 ccccagtagcaggatttcca 129893

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>gb|AC090815.3| Homo sapiens chromosome 15, clone RP11-1078O1, complete sequence
          Length = 180352

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 546   ccccagtagcaggatttcca 565
             ||||||||||||||||||||
Sbjct: 35788 ccccagtagcaggatttcca 35769

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>gb|AC016138.8| Homo sapiens 3 BAC RP11-91B3 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 179680

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 233    ccaggagaaatactgattta 252
              ||||||||||||||||||||
Sbjct: 138246 ccaggagaaatactgattta 138227

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>emb|AL590763.2|HSXDPB Homo sapiens chromosome X  sequence from 6 PACs 1 BAC and 1 cosmid,
              region GJB1-DXS559 map Xq13.1, complete sequence
          Length = 248968

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 304    tgcaataatacatatgctgcccaa 327
              |||||||||| |||||||||||||
Sbjct: 191493 tgcaataataaatatgctgcccaa 191516

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>dbj|AP002035.1| Arabidopsis thaliana genomic DNA, chromosome 3, BAC clone: F6H5
          Length = 95681

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 340   acaccatgaacattataacg 359
             ||||||||||||||||||||
Sbjct: 58239 acaccatgaacattataacg 58220

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>emb|CR388140.8| Zebrafish DNA sequence from clone CH211-190G11, complete sequence
          Length = 160541

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 137    acataaataaagcattatga 156
              ||||||||||||||||||||
Sbjct: 125714 acataaataaagcattatga 125695

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>gb|AC116406.13| Mus musculus chromosome 3, clone RP23-427K12, complete sequence
          Length = 175075

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 188  ttgacttaagttctagttaagcca 211
            ||||||||||||||||| ||||||
Sbjct: 8841 ttgacttaagttctagtaaagcca 8864

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>gb|DQ163882.1| Candidatus Hamiltonella defensa clone P210029 genomic sequence
          Length = 1245

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 330 gcactggttcacaccatgaa 349
           ||||||||||||||||||||
Sbjct: 383 gcactggttcacaccatgaa 402

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>gb|DQ163179.1| Candidatus Hamiltonella defensa clone P030012 genomic sequence
          Length = 681

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 330 gcactggttcacaccatgaa 349
           ||||||||||||||||||||
Sbjct: 332 gcactggttcacaccatgaa 313

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>gb|DQ163118.1| Candidatus Hamiltonella defensa clone P010063 genomic sequence
          Length = 364

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 330 gcactggttcacaccatgaa 349
           ||||||||||||||||||||
Sbjct: 322 gcactggttcacaccatgaa 341

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>gb|AC159813.2| Mus musculus BAC clone RP23-386L9 from chromosome 12, complete sequence
          Length = 213561

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 92     acctgaaactccactcatga 111
              ||||||||||||||||||||
Sbjct: 179030 acctgaaactccactcatga 179011

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>gb|AC171176.1| Mus musculus chromosome 3, clone wi1-2063J20, complete sequence
          Length = 40189

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 188  ttgacttaagttctagttaagcca 211
            ||||||||||||||||| ||||||
Sbjct: 3226 ttgacttaagttctagtaaagcca 3203


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,607,119
Number of Sequences: 3902068
Number of extensions: 5607119
Number of successful extensions: 110171
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 109859
Number of HSP's gapped (non-prelim): 282
length of query: 631
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 608
effective length of database: 17,143,297,704
effective search space: 10423125004032
effective search space used: 10423125004032
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result