Clone Name	rbasd20c01
Clone Library Name	barley_pub

---

No.	Definition	Score (bits)	E Value
1	ref|XM_467831.1| Oryza sativa (japonica cultivar-group), mRNA	42	2.2
2	emb|AL389887.7| Human DNA sequence from clone RP11-54F22 on chro...	42	2.2
3	gb|AC096677.2| Homo sapiens chromosome 1 clone RP11-134G8, compl...	42	2.2
4	gb|AC090999.1| Caenorhabditis elegans cosmid Y82E9BR, complete s...	42	2.2
5	dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D...	42	2.2
6	gb|AC021101.8| Homo sapiens BAC clone RP11-114P18 from 4, comple...	42	2.2
7	gb|AC119427.3| Homo sapiens chromosome 1 clone RP11-27G14, compl...	42	2.2
8	dbj|AP004774.3| Oryza sativa (japonica cultivar-group) genomic D...	42	2.2
9	dbj|AP004119.3| Oryza sativa (japonica cultivar-group) genomic D...	42	2.2
10	dbj|AK066184.1| Oryza sativa (japonica cultivar-group) cDNA clon...	42	2.2
11	dbj|AK062267.1| Oryza sativa (japonica cultivar-group) cDNA clon...	42	2.2
12	gb|AY104474.1| Zea mays PCO112790 mRNA sequence	42	2.2
13	gb|L21906.1|HUMTROPI02 Human troponin I, slow-twitch isoform (TN...	42	2.2
14	gb|BT018691.1| Zea mays clone EL01N0512C10.d mRNA sequence	40	8.7
15	gb|CP000099.1| Methanosarcina barkeri str. fusaro chromosome 1, ...	40	8.7
16	gb|AY724782.1| Rattus norvegicus GON4L isoform B (Gon4l) mRNA, c...	40	8.7
17	gb|AY724781.1| Rattus norvegicus GON4L isoform A (Gon4l) mRNA, c...	40	8.7
18	gb|AY152836.1| Felis catus clone BAC 160a17 major histocompatibl...	40	8.7
19	ref|NM_001024804.1| Rattus norvegicus Dingo protein (LOC499653),...	40	8.7
20	ref|NM_001024797.1| Rattus norvegicus Dingo protein (LOC499653),...	40	8.7
21	emb|X99517.1|ZMEIF5 Z.mays mRNA for eukaryotic initiation factor-5	40	8.7
22	emb|Y00221.1|DMDGHTRL Drosophila mRNA for the sex determining ge...	40	8.7
23	dbj|AP007155.1| Aspergillus oryzae RIB40 genomic DNA, SC003	40	8.7
24	ref|NM_057841.3| Drosophila melanogaster daughterless CG5102-RA ...	40	8.7
25	gb|AC097526.3| Homo sapiens BAC clone RP11-627H22 from 4, comple...	40	8.7
26	emb|CR386725.1| Gallus gallus finished cDNA, clone ChEST225o3	40	8.7
27	gb|AC092237.1|AC092237 Drosophila melanogaster, chromosome 2L, r...	40	8.7
28	gb|M93661.1|RATNOTCHX Rattus norvegicus NOTCH2 mRNA, complete cds	40	8.7
29	gb|AC107208.6| Homo sapiens BAC clone RP13-487K5 from 4, complet...	40	8.7
30	gb|BT003251.1| Drosophila melanogaster LD29371 full insert cDNA	40	8.7
31	gb|AC151826.8| Monodelphis domestica, clone XX-25F7, complete se...	40	8.7
32	emb|AJ132240.1|ZMA132240 Zea mays eIF-5 gene, exons 1-2	40	8.7
33	gb|AC007451.1|AC007451 Drosophila melanogaster, chromosome 2L, r...	40	8.7
34	gb|AE003628.2| Drosophila melanogaster chromosome 2L, section 37...	40	8.7
35	emb|AL049778.3|CNS00004 Human chromosome 14 DNA sequence BAC R-6...	40	8.7
36	gb|AC149051.4| Mus musculus BAC clone RP24-325F10 from 8, comple...	40	8.7
37	ref|NM_024358.1| Rattus norvegicus notch gene homolog 2 (Drosoph...	40	8.7
38	emb|AL356802.5|CNS05TDK Human chromosome 14 DNA sequence BAC C-2...	40	8.7
39	gb|AC171070.2| Rhesus Macaque CHR5 BAC CH250-450H6 (Children's H...	40	8.7
40	gb|J03148.1|DRODANS D.melanogaster daughterless protein (da) mRN...	40	8.7

---

>ref|XM_467831.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1548

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                             
Query: 564  cagtgtctgtttctccactcttttcagatgcag 596
            |||| ||||||||| | ||||||||||||||||
Sbjct: 1071 cagtatctgtttcttccctcttttcagatgcag 1039

---

>emb|AL389887.7| Human DNA sequence from clone RP11-54F22 on chromosome Xq21.1-21.31
             Contains the 5' end of the RPS6KA6 gene for ribosomal
             protein S6 kinase (90kD) polypeptide 6 and a CpG island,
             complete sequence
          Length = 143220

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 444   aacagtatcagtttcttccttcttt 468
             ||||||||||| |||||||||||||
Sbjct: 94159 aacagtatcagattcttccttcttt 94183

---

>gb|AC096677.2| Homo sapiens chromosome 1 clone RP11-134G8, complete sequence
          Length = 223735

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 516   ctcttccctctcctcagatgc 536
             |||||||||||||||||||||
Sbjct: 15023 ctcttccctctcctcagatgc 15043

---

>gb|AC090999.1| Caenorhabditis elegans cosmid Y82E9BR, complete sequence
          Length = 139291

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 201   ttaaaagggttgttatcactt 221
             |||||||||||||||||||||
Sbjct: 36919 ttaaaagggttgttatcactt 36899

---

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                                 
Query: 564      cagtgtctgtttctccactcttttcagatgcag 596
                |||| ||||||||| | ||||||||||||||||
Sbjct: 31623627 cagtatctgtttcttccctcttttcagatgcag 31623659

---

>gb|AC021101.8| Homo sapiens BAC clone RP11-114P18 from 4, complete sequence
          Length = 47069

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 227   gttcatctgttggtgggaatt 247
             |||||||||||||||||||||
Sbjct: 19057 gttcatctgttggtgggaatt 19077

---

>gb|AC119427.3| Homo sapiens chromosome 1 clone RP11-27G14, complete sequence
          Length = 181148

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 516    ctcttccctctcctcagatgc 536
              |||||||||||||||||||||
Sbjct: 170032 ctcttccctctcctcagatgc 170052

---

>dbj|AP004774.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0431B06
          Length = 154796

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                               
Query: 564    cagtgtctgtttctccactcttttcagatgcag 596
              |||| ||||||||| | ||||||||||||||||
Sbjct: 114187 cagtatctgtttcttccctcttttcagatgcag 114219

---

>dbj|AP004119.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
            clone:OJ1288_G09
          Length = 109672

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                             
Query: 564  cagtgtctgtttctccactcttttcagatgcag 596
            |||| ||||||||| | ||||||||||||||||
Sbjct: 3414 cagtatctgtttcttccctcttttcagatgcag 3446

---

>dbj|AK066184.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013056M21, full
            insert sequence
          Length = 1548

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                             
Query: 564  cagtgtctgtttctccactcttttcagatgcag 596
            |||| ||||||||| | ||||||||||||||||
Sbjct: 1071 cagtatctgtttcttccctcttttcagatgcag 1039

---

>dbj|AK062267.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-100-A02, full
            insert sequence
          Length = 1165

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                             
Query: 564  cagtgtctgtttctccactcttttcagatgcag 596
            |||| ||||||||| | ||||||||||||||||
Sbjct: 1067 cagtatctgtttcttccctcttttcagatgcag 1035

---

>gb|AY104474.1| Zea mays PCO112790 mRNA sequence
          Length = 2008

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 262 ctcatatcaacatctgagacg 282
           |||||||||||||||||||||
Sbjct: 801 ctcatatcaacatctgagacg 781

---

>gb|L21906.1|HUMTROPI02 Human troponin I, slow-twitch isoform (TNNI1) gene, exons 2-4
          Length = 2607

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 516 ctcttccctctcctcagatgc 536
           |||||||||||||||||||||
Sbjct: 788 ctcttccctctcctcagatgc 768

---

>gb|BT018691.1| Zea mays clone EL01N0512C10.d mRNA sequence
          Length = 1992

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 262 ctcatatcaacatctgagac 281
           ||||||||||||||||||||
Sbjct: 794 ctcatatcaacatctgagac 775

---

>gb|CP000099.1| Methanosarcina barkeri str. fusaro chromosome 1, complete sequence
          Length = 4837408

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 2       atttactaaaaagggcaggc 21
               ||||||||||||||||||||
Sbjct: 1590287 atttactaaaaagggcaggc 1590268

---

>gb|AY724782.1| Rattus norvegicus GON4L isoform B (Gon4l) mRNA, complete cds,
            alternatively spliced
          Length = 7820

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 551  tccttctccgatccagtgtctgtt 574
            |||||||||| |||||||||||||
Sbjct: 4686 tccttctccgctccagtgtctgtt 4663

---

>gb|AY724781.1| Rattus norvegicus GON4L isoform A (Gon4l) mRNA, complete cds,
            alternatively spliced
          Length = 7740

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 551  tccttctccgatccagtgtctgtt 574
            |||||||||| |||||||||||||
Sbjct: 4686 tccttctccgctccagtgtctgtt 4663

---

>gb|AY152836.1| Felis catus clone BAC 160a17 major histocompatiblity complex classical
              class II region, partial sequence
          Length = 130898

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 228    ttcatctgttggtgggaatt 247
              ||||||||||||||||||||
Sbjct: 104484 ttcatctgttggtgggaatt 104465

---

>ref|NM_001024804.1| Rattus norvegicus Dingo protein (LOC499653), transcript variant 2,
            mRNA
          Length = 7820

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 551  tccttctccgatccagtgtctgtt 574
            |||||||||| |||||||||||||
Sbjct: 4686 tccttctccgctccagtgtctgtt 4663

---

>ref|NM_001024797.1| Rattus norvegicus Dingo protein (LOC499653), transcript variant 1,
            mRNA
          Length = 7740

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 551  tccttctccgatccagtgtctgtt 574
            |||||||||| |||||||||||||
Sbjct: 4686 tccttctccgctccagtgtctgtt 4663

---

>emb|X99517.1|ZMEIF5 Z.mays mRNA for eukaryotic initiation factor-5
          Length = 1975

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 262 ctcatatcaacatctgagac 281
           ||||||||||||||||||||
Sbjct: 749 ctcatatcaacatctgagac 730

---

>emb|Y00221.1|DMDGHTRL Drosophila mRNA for the sex determining gene daughterless
          Length = 2954

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 190  tttgttgtgtgttaaaagggttgt 213
            |||||||||||||||||| |||||
Sbjct: 2565 tttgttgtgtgttaaaagtgttgt 2542

---

>dbj|AP007155.1| Aspergillus oryzae RIB40 genomic DNA, SC003
          Length = 4170692

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 303     tcacgggtcagatgaactgc 322
               ||||||||||||||||||||
Sbjct: 2021017 tcacgggtcagatgaactgc 2021036

---

>ref|NM_057841.3| Drosophila melanogaster daughterless CG5102-RA (da), mRNA
          Length = 3188

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 190  tttgttgtgtgttaaaagggttgt 213
            |||||||||||||||||| |||||
Sbjct: 2802 tttgttgtgtgttaaaagtgttgt 2779

---

>gb|AC097526.3| Homo sapiens BAC clone RP11-627H22 from 4, complete sequence
          Length = 144324

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 302    ttcacgggtcagatgaactg 321
              ||||||||||||||||||||
Sbjct: 133393 ttcacgggtcagatgaactg 133412

---

>emb|CR386725.1| Gallus gallus finished cDNA, clone ChEST225o3
          Length = 717

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 515 tctcttccctctcctcagat 534
           ||||||||||||||||||||
Sbjct: 249 tctcttccctctcctcagat 268

---

>gb|AC092237.1|AC092237 Drosophila melanogaster, chromosome 2L, region 31C-31D, BAC clone
            BACR30M19, complete sequence
          Length = 154779

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 190  tttgttgtgtgttaaaagggttgt 213
            |||||||||||||||||| |||||
Sbjct: 8884 tttgttgtgtgttaaaagtgttgt 8907

---

>gb|M93661.1|RATNOTCHX Rattus norvegicus NOTCH2 mRNA, complete cds
          Length = 8287

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 551 tccttctccgatccagtgtctgtt 574
           |||||||||| |||||||||||||
Sbjct: 142 tccttctccgctccagtgtctgtt 165

---

>gb|AC107208.6| Homo sapiens BAC clone RP13-487K5 from 4, complete sequence
          Length = 81763

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 302   ttcacgggtcagatgaactg 321
             ||||||||||||||||||||
Sbjct: 67332 ttcacgggtcagatgaactg 67351

---

>gb|BT003251.1| Drosophila melanogaster LD29371 full insert cDNA
          Length = 3156

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 190  tttgttgtgtgttaaaagggttgt 213
            |||||||||||||||||| |||||
Sbjct: 2778 tttgttgtgtgttaaaagtgttgt 2755

---

>gb|AC151826.8| Monodelphis domestica, clone XX-25F7, complete sequence
          Length = 152619

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 236    ttggtgggaattcactgtgg 255
              ||||||||||||||||||||
Sbjct: 104490 ttggtgggaattcactgtgg 104471

---

>emb|AJ132240.1|ZMA132240 Zea mays eIF-5 gene, exons 1-2
          Length = 6831

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 262  ctcatatcaacatctgagac 281
            ||||||||||||||||||||
Sbjct: 3948 ctcatatcaacatctgagac 3929

---

>gb|AC007451.1|AC007451 Drosophila melanogaster, chromosome 2L, region 31D1-31F4, BAC clones
             DS00953 and BACR48K04, complete sequence
          Length = 161754

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 190   tttgttgtgtgttaaaagggttgt 213
             |||||||||||||||||| |||||
Sbjct: 52247 tttgttgtgtgttaaaagtgttgt 52224

---

>gb|AE003628.2| Drosophila melanogaster chromosome 2L, section 37 of 83 of the complete
              sequence
          Length = 269102

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 190    tttgttgtgtgttaaaagggttgt 213
              |||||||||||||||||| |||||
Sbjct: 154515 tttgttgtgtgttaaaagtgttgt 154492

---

>emb|AL049778.3|CNS00004 Human chromosome 14 DNA sequence BAC R-643C12 of library RPCI-11 from
            chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 205581

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 275  ctgagacgtacttttcatcc 294
            ||||||||||||||||||||
Sbjct: 6663 ctgagacgtacttttcatcc 6682

---

>gb|AC149051.4| Mus musculus BAC clone RP24-325F10 from 8, complete sequence
          Length = 184939

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 220    ttttaatgttcatctgttgg 239
              ||||||||||||||||||||
Sbjct: 132310 ttttaatgttcatctgttgg 132291

---

>ref|NM_024358.1| Rattus norvegicus notch gene homolog 2 (Drosophila) (Notch2), mRNA
          Length = 8287

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 551 tccttctccgatccagtgtctgtt 574
           |||||||||| |||||||||||||
Sbjct: 142 tccttctccgctccagtgtctgtt 165

---

>emb|AL356802.5|CNS05TDK Human chromosome 14 DNA sequence BAC C-2137E9 of library CalTech-D from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 137883

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 275    ctgagacgtacttttcatcc 294
              ||||||||||||||||||||
Sbjct: 118786 ctgagacgtacttttcatcc 118805

---

>gb|AC171070.2| Rhesus Macaque CHR5 BAC CH250-450H6 (Children's Hospital Oakland
             Research Institute Rhesus macaque Adult Male BAC Library)
             complete sequence
          Length = 171429

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 165   acaaaataagtcaggcagcttccc 188
             ||||||||||||| ||||||||||
Sbjct: 13686 acaaaataagtcaagcagcttccc 13663

---

>gb|J03148.1|DRODANS D.melanogaster daughterless protein (da) mRNA, complete cds
          Length = 2813

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 190  tttgttgtgtgttaaaagggttgt 213
            |||||||||||||||||| |||||
Sbjct: 2488 tttgttgtgtgttaaaagtgttgt 2465


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,492,977
Number of Sequences: 3902068
Number of extensions: 5492977
Number of successful extensions: 117755
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 117571
Number of HSP's gapped (non-prelim): 184
length of query: 640
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 617
effective length of database: 17,143,297,704
effective search space: 10577414683368
effective search space used: 10577414683368
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

---