>FBX41_MOUSE (Q6NS60) F-box only protein 41|
          Length = 872

 Score = 32.0 bits (71), Expect = 1.3
 Identities = 18/47 (38%), Positives = 24/47 (51%)
 Frame = -2

Query: 391 GACSSTHASRTANPSPASLGIRQPPRGLKIRPLQKLLETGTLEGAKE 251
           G CS   ++  A+PSPA +   +    LKIR L+KL     LE   E
Sbjct: 175 GPCSGPSSASPASPSPADVAYEEGLARLKIRALEKLEVDRRLERLSE 221

>ARHG1_RAT (Q9Z1I6) Rho guanine nucleotide exchange factor 1 (Lbc's second|
           cousin)
          Length = 919

 Score = 31.6 bits (70), Expect = 1.7
 Identities = 20/69 (28%), Positives = 30/69 (43%)
 Frame = -2

Query: 400 RRTGACSSTHASRTANPSPASLGIRQPPRGLKIRPLQKLLETGTLEGAKERKRLTASISA 221
           R+   C S+H SRT  P+P    +        +RP+ +L    T E A + K      + 
Sbjct: 678 RQDEGCCSSHTSRTLTPTPDGKTM--------LRPVLRLTSAMTREVATDHKAFYVIFTW 729

Query: 220 TQHAIVYRL 194
            Q A +Y L
Sbjct: 730 DQEAQIYEL 738

>MEF2C_MOUSE (Q8CFN5) Myocyte-specific enhancer factor 2C|
          Length = 474

 Score = 31.6 bits (70), Expect = 1.7
 Identities = 25/88 (28%), Positives = 38/88 (43%), Gaps = 7/88 (7%)
 Frame = -2

Query: 409 SKIRRTGACSSTHASRTAN---PSPASLGIR----QPPRGLKIRPLQKLLETGTLEGAKE 251
           S + + GAC+STH S+++N   PS  SL I+     PPR     P +    T   E  + 
Sbjct: 361 SALSQLGACTSTHLSQSSNLSLPSTQSLSIKSEPVSPPRDRTTTPSRYPQHTTRHEAGRS 420

Query: 250 RKRLTASISATQHAIVYRLHEMLLHSTV 167
                +S S++        H    HS +
Sbjct: 421 PVDSLSSCSSSYDGSDREDHRNEFHSPI 448

>NXF2_HUMAN (Q9GZY0) Nuclear RNA export factor 2 (TAP-like protein 2) (TAPL-2)|
          Length = 626

 Score = 31.2 bits (69), Expect = 2.2
 Identities = 18/88 (20%), Positives = 42/88 (47%), Gaps = 2/88 (2%)
 Frame = -1

Query: 461 VEVLNGLRNKMVNDLKVVEDKEDWGMFIDSCFTHCQSLSGISWHSPTSPRLENKTIA--E 288
           ++++   RN M   LK++E      + ++ C      L G+S  +  +P+++   ++  +
Sbjct: 248 IDIILNRRNCMAATLKIIERNFPELLSLNLCNNKLYQLDGLSDITEKAPKVKTLNLSKNK 307

Query: 287 AVGDWHSGRSQGAKEIDCKYQCNPTCNS 204
               W  G+ +G K  +   + NP C++
Sbjct: 308 LESAWELGKVKGLKLEELWLEGNPLCST 335

>MEF2C_HUMAN (Q06413) Myocyte-specific enhancer factor 2C|
          Length = 473

 Score = 30.8 bits (68), Expect = 2.9
 Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 3/34 (8%)
 Frame = -2

Query: 409 SKIRRTGACSSTHASRTAN---PSPASLGIRQPP 317
           S + + GAC+STH S+++N   PS  SL I+  P
Sbjct: 361 SALSQLGACTSTHLSQSSNLSLPSTQSLNIKSEP 394

>NFKB1_DROME (Q94527) Nuclear factor NF-kappa-B p110 subunit (Relish protein)|
           (Rel-p110) [Contains: Nuclear factor NF-kappa-B p68
           subunit (Rel-p68); Nuclear factor NF-kappa-B p49 subunit
           (Rel-p49)]
          Length = 971

 Score = 30.4 bits (67), Expect = 3.8
 Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 5/40 (12%)
 Frame = -2

Query: 412 SSKIRRTGACSSTHASRTANPS-----PASLGIRQPPRGL 308
           S K RRTG+ +++ +S T + +     P +LG+ QPP GL
Sbjct: 452 SRKRRRTGSSANSSSSGTESSNNSLDLPKTLGLAQPPNGL 491

>NXF5_HUMAN (Q9H1B4) Nuclear RNA export factor 5 (TAP-like protein 1) (TAPL-1)|
          Length = 397

 Score = 30.0 bits (66), Expect = 5.0
 Identities = 18/88 (20%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
 Frame = -1

Query: 461 VEVLNGLRNKMVNDLKVVEDKEDWGMFIDSCFTHCQSLSGISWHSPTSPRLENKTIA--E 288
           ++++   RN M   LK+ E      + ++ C      L G+S  +  +P+++   ++  +
Sbjct: 137 IDIILNRRNCMAATLKITERNFPELLSLNLCNNKLYQLDGLSDITEKAPKVKTLNLSKNK 196

Query: 287 AVGDWHSGRSQGAKEIDCKYQCNPTCNS 204
               W  G+ +G K  +   + NP C++
Sbjct: 197 LESAWELGKVKGLKLEELWLEGNPLCST 224

>FBX41_HUMAN (Q8TF61) F-box only protein 41|
          Length = 874

 Score = 29.6 bits (65), Expect = 6.5
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = -2

Query: 391 GACSSTHASRTANPSPASLGIRQPPRGLKIRPLQKLLETGTLEGAKE 251
           G C    ++  A+PSPA +   +    LKIR L+KL     LE   E
Sbjct: 177 GPCPGPASASPASPSPADVAYEEGLARLKIRALEKLEVDRRLERLSE 223

>NUPL2_XENTR (Q5FVW4) Nucleoporin-like 2|
          Length = 449

 Score = 29.3 bits (64), Expect = 8.5
 Identities = 16/66 (24%), Positives = 33/66 (50%)
 Frame = -1

Query: 503 LSCKENIRNCNSTQVEVLNGLRNKMVNDLKVVEDKEDWGMFIDSCFTHCQSLSGISWHSP 324
           LS ++N R+  + +  +++ +     ND+++ E    W   + S     +++SG +  SP
Sbjct: 105 LSSQDNSRDAQTDKGNIIDDI----TNDMEIWESSGQWMFSVYSMLREKKNISGFADFSP 160

Query: 323 TSPRLE 306
              RLE
Sbjct: 161 EELRLE 166

>SRP72_SCHPO (O59787) Signal recognition particle 72 kDa protein homolog (SRP72)|
          Length = 561

 Score = 29.3 bits (64), Expect = 8.5
 Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 6/72 (8%)
 Frame = +3

Query: 279 SNSFCNGLIFKPRGGWRMPRDAGEGLAVRE----A*VDEHAPVLLIFDDLQVIDHLIPQS 446
           S  F + L+ +    WR  +     L +      A +DE APV  I DD+ VID L+   
Sbjct: 384 STGFKSQLLHEAANYWRKQQSCEAKLLLCTRSLLAHLDERAPVSTIQDDMSVIDDLLQWK 443

Query: 447 --IEDFNLCRVA 476
             I +   C+VA
Sbjct: 444 GPISELVSCKVA 455


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,560,676
Number of Sequences: 219361
Number of extensions: 1494070
Number of successful extensions: 4048
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3936
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4046
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4929664480
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)