ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd20b16
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AL512430.14| Human DNA sequence from clone RP11-346C16 on ch... 44 0.50
2gb|AC124785.7| Rattus norvegicus 4 BAC CH230-141I8 (Children's H... 44 0.50
3gb|AC002464.1|AC002464 Human BAC clone CTA-331P3, complete sequence 44 0.50
4emb|AL683897.5| Mouse DNA sequence from clone RP23-208E23 on chr... 44 0.50
5gb|AC141898.3| Mus musculus BAC clone RP23-155I18 from chromosom... 42 2.0
6gb|AY596172.1| Pear black necrotic leaf spot virus, complete seq... 42 2.0
7gb|AF165424.6| Homo sapiens chromosome 8 clone CTB-402F2 map q21... 42 2.0
8emb|CR933366.1| NOWA1-related protein, Paramecium tetraurelia ma... 42 2.0
9gb|AC083845.15| Homo sapiens, clone RP11-459L5, complete sequence 42 2.0
10gb|AC103760.2| Homo sapiens chromosome 8, clone CTD-2284J15, com... 42 2.0
11gb|AC080078.7| Homo sapiens BAC clone RP11-461L13 from 4, comple... 42 2.0
12gb|AC023826.6| Homo sapiens chromosome 16 clone RP11-380E14, com... 42 2.0
13gb|AC007597.3|AC007597 Homo sapiens chromosome 16 clone RP11-137... 42 2.0
14gb|AY110511.1| Zea mays CL5312_1 mRNA sequence 42 2.0
15gb|AY106613.1| Zea mays PCO094715 mRNA sequence 42 2.0
16gb|AC122017.5| Mus musculus BAC clone RP24-361J4 from 7, complet... 42 2.0
17gb|AC122871.4| Mus musculus BAC clone RP23-107P12 from 5, comple... 42 2.0
18ref|NM_129037.3| Arabidopsis thaliana protein transporter AT2G34... 40 7.9
19ref|NM_190233.1| Oryza sativa (japonica cultivar-group), predic... 40 7.9
20gb|AC146094.2| Pan troglodytes BAC clone RP43-48M18 from 7, comp... 40 7.9
21gb|AC122502.5| Mus musculus BAC clone RP24-413E14 from chromosom... 40 7.9
22gb|AC121244.13| Medicago truncatula clone mth2-31b9, complete se... 40 7.9
23emb|AL935256.1| Lactobacillus plantarum strain WCFS1 complete ge... 40 7.9
24emb|BX284700.13| Zebrafish DNA sequence from clone CH211-269O12 ... 40 7.9
25emb|BX571978.13| Zebrafish DNA sequence from clone CH211-156B2 i... 40 7.9
26gb|AY142051.1| Arabidopsis thaliana At2g34840/F19I3.7 mRNA, comp... 40 7.9
27emb|CR788252.4| Zebrafish DNA sequence from clone DKEY-45J10 in ... 40 7.9
28gb|AC004238.3| Arabidopsis thaliana chromosome 2 clone F19I3 map... 40 7.9
29gb|AY075627.1| Arabidopsis thaliana At2g34840/F19I3.7 mRNA, comp... 40 7.9
30gb|AC102680.10| Mus musculus chromosome 8, clone RP24-88L18, com... 40 7.9
31dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.9
32dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.9
33emb|BX321919.10| Zebrafish DNA sequence from clone CH211-236B8, ... 40 7.9
34dbj|AP001732.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 40 7.9
35gb|AF541270.1|AF541269S2 Bos taurus ankyrin and SOCS box-contain... 40 7.9
36dbj|AP003407.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.9
37gb|AC104563.14| Homo sapiens chromosome 11, clone RP11-587D21, c... 40 7.9
38gb|AC173966.1| Mus musculus BAC clone RP23-159L16 from chromosom... 40 7.9
39dbj|AP004254.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.9
40dbj|AP000417.1| Arabidopsis thaliana genomic DNA, chromosome 3, ... 40 7.9
41emb|BX255939.3| Zebrafish DNA sequence from clone DKEY-5G7 in li... 40 7.9
42gb|AE000511.1| Helicobacter pylori 26695, complete genome 40 7.9
43dbj|AP006122.1| Lotus japonicus genomic DNA, chromosome 1, clone... 40 7.9
44gb|AC167013.4| Mus musculus BAC clone RP23-262F9 from chromosome... 40 7.9
45gb|AC156790.2| Mus musculus BAC clone RP24-359N3 from chromosome... 40 7.9
46dbj|AP001037.1| Homo sapiens genomic DNA, chromosome 21, clone:K... 40 7.9
47emb|AL627446.12| Mouse DNA sequence from clone RP23-211F22 on ch... 40 7.9 
>emb|AL512430.14| Human DNA sequence from clone RP11-346C16 on chromosome 6 Contains the
             3' part of gene KIAA1028, a pseudogene similar to
             ribosomal protein S19 (RPS19), a pseudogene similar to
             protein phosphatases, a ribosomal protein S20 (RPS20)
             pseudogene and a CpG island, complete sequence
          Length = 189098

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 10    caaaactatctgaaacagggtc 31
             ||||||||||||||||||||||
Sbjct: 18929 caaaactatctgaaacagggtc 18908
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>gb|AC124785.7| Rattus norvegicus 4 BAC CH230-141I8 (Children's Hospital Oakland
            Research Institute) complete sequence
          Length = 61619

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 69   tttcatgcatgatgaatattattttc 94
            |||||||||||||||||||| |||||
Sbjct: 2945 tttcatgcatgatgaatattgttttc 2920
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>gb|AC002464.1|AC002464 Human BAC clone CTA-331P3, complete sequence
          Length = 123805

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 10    caaaactatctgaaacagggtc 31
             ||||||||||||||||||||||
Sbjct: 23565 caaaactatctgaaacagggtc 23586
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>emb|AL683897.5| Mouse DNA sequence from clone RP23-208E23 on chromosome 2, complete
             sequence
          Length = 187308

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 75    gcatgatgaatattattttcactttg 100
             ||||| ||||||||||||||||||||
Sbjct: 35195 gcatggtgaatattattttcactttg 35220
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>gb|AC141898.3| Mus musculus BAC clone RP23-155I18 from chromosome 5, complete sequence
          Length = 232201

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 268   gagtgccagtctccaacagct 288
             |||||||||||||||||||||
Sbjct: 29545 gagtgccagtctccaacagct 29565
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>gb|AY596172.1| Pear black necrotic leaf spot virus, complete sequence
          Length = 6497

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 64  attattttcatgcatgatgaa 84
           |||||||||||||||||||||
Sbjct: 538 attattttcatgcatgatgaa 558
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>gb|AF165424.6| Homo sapiens chromosome 8 clone CTB-402F2 map q21.3, complete sequence
          Length = 111736

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 82    gaatattattttcactttgat 102
             |||||||||||||||||||||
Sbjct: 97702 gaatattattttcactttgat 97722
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>emb|CR933366.1| NOWA1-related protein, Paramecium tetraurelia macronuclear gene
          Length = 1253

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 52  atcctgattattattattttc 72
           |||||||||||||||||||||
Sbjct: 619 atcctgattattattattttc 599
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>gb|AC083845.15| Homo sapiens, clone RP11-459L5, complete sequence
          Length = 132843

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 82     gaatattattttcactttgat 102
              |||||||||||||||||||||
Sbjct: 114987 gaatattattttcactttgat 114967
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>gb|AC103760.2| Homo sapiens chromosome 8, clone CTD-2284J15, complete sequence
          Length = 112655

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 82    gaatattattttcactttgat 102
             |||||||||||||||||||||
Sbjct: 25412 gaatattattttcactttgat 25392
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>gb|AC080078.7| Homo sapiens BAC clone RP11-461L13 from 4, complete sequence
          Length = 150567

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 76     catgatgaatattattttcactttg 100
              ||||||||||||| |||||||||||
Sbjct: 132377 catgatgaatattgttttcactttg 132353
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>gb|AC023826.6| Homo sapiens chromosome 16 clone RP11-380E14, complete sequence
          Length = 196755

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 51   gatcctgattattattatttt 71
            |||||||||||||||||||||
Sbjct: 7383 gatcctgattattattatttt 7363
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>gb|AC007597.3|AC007597 Homo sapiens chromosome 16 clone RP11-137H10, complete sequence
          Length = 192814

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 51    gatcctgattattattatttt 71
             |||||||||||||||||||||
Sbjct: 67797 gatcctgattattattatttt 67817
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>gb|AY110511.1| Zea mays CL5312_1 mRNA sequence
          Length = 1791

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 369 gcatgagtcgatgaacatgcc 389
           |||||||||||||||||||||
Sbjct: 544 gcatgagtcgatgaacatgcc 564
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>gb|AY106613.1| Zea mays PCO094715 mRNA sequence
          Length = 1106

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 369 gcatgagtcgatgaacatgcc 389
           |||||||||||||||||||||
Sbjct: 596 gcatgagtcgatgaacatgcc 576
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>gb|AC122017.5| Mus musculus BAC clone RP24-361J4 from 7, complete sequence
          Length = 158807

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 34    agaatttatagcttgaagatc 54
             |||||||||||||||||||||
Sbjct: 92031 agaatttatagcttgaagatc 92011
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>gb|AC122871.4| Mus musculus BAC clone RP23-107P12 from 5, complete sequence
          Length = 213939

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 268   gagtgccagtctccaacagct 288
             |||||||||||||||||||||
Sbjct: 22683 gagtgccagtctccaacagct 22663
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>ref|NM_129037.3| Arabidopsis thaliana protein transporter AT2G34840 mRNA, complete
           cds
          Length = 1161

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 63  tattattttcatgcatgatgaatattat 90
           |||||||||||||||||| ||| |||||
Sbjct: 436 tattattttcatgcatgaagaagattat 463
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>ref|NM_190233.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1221

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                    
Query: 358  cagtgcgtgaagcatgagtcgatgaacatgccccagtcct 397
            ||||| ||||||||||| || |||||||  ||||||||||
Sbjct: 1052 cagtgggtgaagcatgaatcaatgaacagtccccagtcct 1013
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>gb|AC146094.2| Pan troglodytes BAC clone RP43-48M18 from 7, complete sequence
          Length = 192766

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 48    gaagatcctgattattattatttt 71
             ||||||||| ||||||||||||||
Sbjct: 37290 gaagatccttattattattatttt 37267
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>gb|AC122502.5| Mus musculus BAC clone RP24-413E14 from chromosome 17, complete
             sequence
          Length = 187423

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 52    atcctgattattattatttt 71
             ||||||||||||||||||||
Sbjct: 96237 atcctgattattattatttt 96218
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>gb|AC121244.13| Medicago truncatula clone mth2-31b9, complete sequence
          Length = 146189

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 68    ttttcatgcatgatgaatat 87
             ||||||||||||||||||||
Sbjct: 49271 ttttcatgcatgatgaatat 49290
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>emb|AL935256.1| Lactobacillus plantarum strain WCFS1 complete genome; segment 5/11
          Length = 302050

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 76     catgatgaatattattttca 95
              ||||||||||||||||||||
Sbjct: 209580 catgatgaatattattttca 209561
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>emb|BX284700.13| Zebrafish DNA sequence from clone CH211-269O12 in linkage group 13,
              complete sequence
          Length = 183756

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 82     gaatattattttcactttga 101
              ||||||||||||||||||||
Sbjct: 122548 gaatattattttcactttga 122567
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>emb|BX571978.13| Zebrafish DNA sequence from clone CH211-156B2 in linkage group 6,
             complete sequence
          Length = 100510

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 52    atcctgattattattatttt 71
             ||||||||||||||||||||
Sbjct: 24255 atcctgattattattatttt 24274
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>gb|AY142051.1| Arabidopsis thaliana At2g34840/F19I3.7 mRNA, complete cds
          Length = 882

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 63  tattattttcatgcatgatgaatattat 90
           |||||||||||||||||| ||| |||||
Sbjct: 345 tattattttcatgcatgaagaagattat 372
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>emb|CR788252.4| Zebrafish DNA sequence from clone DKEY-45J10 in linkage group 13,
             complete sequence
          Length = 73390

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 82    gaatattattttcactttga 101
             ||||||||||||||||||||
Sbjct: 10821 gaatattattttcactttga 10840
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>gb|AC004238.3| Arabidopsis thaliana chromosome 2 clone F19I3 map ve016, complete
             sequence
          Length = 108484

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 63    tattattttcatgcatgatgaatattat 90
             |||||||||||||||||| ||| |||||
Sbjct: 31799 tattattttcatgcatgaagaagattat 31826
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>gb|AY075627.1| Arabidopsis thaliana At2g34840/F19I3.7 mRNA, complete cds
          Length = 1129

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 63  tattattttcatgcatgatgaatattat 90
           |||||||||||||||||| ||| |||||
Sbjct: 404 tattattttcatgcatgaagaagattat 431
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>gb|AC102680.10| Mus musculus chromosome 8, clone RP24-88L18, complete sequence
          Length = 201260

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 62    ttattattttcatgcatgatgaat 85
             ||||||||||||||||| ||||||
Sbjct: 95167 ttattattttcatgcattatgaat 95144
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 58      attattattattttcatgca 77
               ||||||||||||||||||||
Sbjct: 1368011 attattattattttcatgca 1368030
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                        
Query: 358      cagtgcgtgaagcatgagtcgatgaacatgccccagtcct 397
                ||||| ||||||||||| || |||||||  ||||||||||
Sbjct: 38794492 cagtgggtgaagcatgaatcaatgaacagtccccagtcct 38794531
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>emb|BX321919.10| Zebrafish DNA sequence from clone CH211-236B8, complete sequence
          Length = 163495

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 56    tgattattattattttcatg 75
             ||||||||||||||||||||
Sbjct: 50438 tgattattattattttcatg 50419
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>dbj|AP001732.1| Homo sapiens genomic DNA, chromosome 21q, section 76/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 484   atattttccttgcaactcaa 503
             ||||||||||||||||||||
Sbjct: 55658 atattttccttgcaactcaa 55639
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>gb|AF541270.1|AF541269S2 Bos taurus ankyrin and SOCS box-containing protein 15 (Asb-15)
           gene, exon 2
          Length = 766

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 45  cttgaagatcctgattatta 64
           ||||||||||||||||||||
Sbjct: 540 cttgaagatcctgattatta 559
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>dbj|AP003407.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1078G07
          Length = 199457

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                     
Query: 358   cagtgcgtgaagcatgagtcgatgaacatgccccagtcct 397
             ||||| ||||||||||| || |||||||  ||||||||||
Sbjct: 67374 cagtgggtgaagcatgaatcaatgaacagtccccagtcct 67413
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>gb|AC104563.14| Homo sapiens chromosome 11, clone RP11-587D21, complete sequence
          Length = 141200

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 56    tgattattattattttcatg 75
             ||||||||||||||||||||
Sbjct: 49686 tgattattattattttcatg 49705
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>gb|AC173966.1| Mus musculus BAC clone RP23-159L16 from chromosome 14, complete sequence
          Length = 188342

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 382    aacatgccccagtcctcctt 401
              ||||||||||||||||||||
Sbjct: 135154 aacatgccccagtcctcctt 135173
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>dbj|AP004254.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1126_D10
          Length = 90631

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 58    attattattattttcatgca 77
             ||||||||||||||||||||
Sbjct: 60368 attattattattttcatgca 60387
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>dbj|AP000417.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MMB12
          Length = 73977

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 72    catgcatgatgaatattatt 91
             ||||||||||||||||||||
Sbjct: 54327 catgcatgatgaatattatt 54346
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>emb|BX255939.3| Zebrafish DNA sequence from clone DKEY-5G7 in linkage group 20,
             complete sequence
          Length = 168897

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 58    attattattattttcatgca 77
             ||||||||||||||||||||
Sbjct: 13155 attattattattttcatgca 13136
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>gb|AE000511.1| Helicobacter pylori 26695, complete genome
          Length = 1667867

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 65      ttattttcatgcatgatgaa 84
               ||||||||||||||||||||
Sbjct: 1513877 ttattttcatgcatgatgaa 1513858
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>dbj|AP006122.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT16D13, TM0206b,
             complete sequence
          Length = 73101

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 64    attattttcatgcatgatga 83
             ||||||||||||||||||||
Sbjct: 35323 attattttcatgcatgatga 35304
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>gb|AC167013.4| Mus musculus BAC clone RP23-262F9 from chromosome 14, complete sequence
          Length = 236791

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 382    aacatgccccagtcctcctt 401
              ||||||||||||||||||||
Sbjct: 170979 aacatgccccagtcctcctt 170960



 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 382   aacatgccccagtcctcctt 401
             ||||||||||||||||||||
Sbjct: 11879 aacatgccccagtcctcctt 11898
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>gb|AC156790.2| Mus musculus BAC clone RP24-359N3 from chromosome 14, complete sequence
          Length = 233946

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 382   aacatgccccagtcctcctt 401
             ||||||||||||||||||||
Sbjct: 28118 aacatgccccagtcctcctt 28099
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>dbj|AP001037.1| Homo sapiens genomic DNA, chromosome 21, clone:KB2042G5, ERG-ETS2
             region, complete sequence
          Length = 165644

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 484   atattttccttgcaactcaa 503
             ||||||||||||||||||||
Sbjct: 42539 atattttccttgcaactcaa 42520
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>emb|AL627446.12| Mouse DNA sequence from clone RP23-211F22 on chromosome 4, complete
             sequence
          Length = 103091

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 58    attattattattttcatgca 77
             ||||||||||||||||||||
Sbjct: 35371 attattattattttcatgca 35390


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,507,499
Number of Sequences: 3902068
Number of extensions: 6507499
Number of successful extensions: 183573
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 183349
Number of HSP's gapped (non-prelim): 224
length of query: 578
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 555
effective length of database: 17,143,297,704
effective search space: 9514530225720
effective search space used: 9514530225720
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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