>THF1_ORYSA (Q84PB7) Protein THYLAKOID FORMATION1, chloroplast precursor|
          Length = 287

 Score = 31.6 bits (70), Expect = 0.51
 Identities = 13/20 (65%), Positives = 15/20 (75%)
 Frame = -3

Query: 283 TPKPNEAVAKFDGSTYPLKH 224
           TPK NEAV KFDGS   ++H
Sbjct: 268 TPKSNEAVTKFDGSLNSMRH 287

>COPB_RAT (P23514) Coatomer subunit beta (Beta-coat protein) (Beta-COP)|
          Length = 953

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 14/29 (48%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
 Frame = -3

Query: 184 QILTVIH-LDSVENYRGHLWLLLAWCSTR 101
           ++L V H + SV+ YRG LW+L  +CST+
Sbjct: 441 KMLEVFHAIKSVKIYRGALWILGEYCSTK 469

>COPB_MOUSE (Q9JIF7) Coatomer subunit beta (Beta-coat protein) (Beta-COP)|
          Length = 953

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 14/29 (48%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
 Frame = -3

Query: 184 QILTVIH-LDSVENYRGHLWLLLAWCSTR 101
           ++L V H + SV+ YRG LW+L  +CST+
Sbjct: 441 KMLEVFHAIKSVKIYRGALWILGEYCSTK 469

>COPB_HUMAN (P53618) Coatomer subunit beta (Beta-coat protein) (Beta-COP)|
          Length = 953

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 14/29 (48%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
 Frame = -3

Query: 184 QILTVIH-LDSVENYRGHLWLLLAWCSTR 101
           ++L V H + SV+ YRG LW+L  +CST+
Sbjct: 441 KMLEVFHAIKSVKIYRGALWILGEYCSTK 469

>VNUC_MABVM (P27588) Nucleoprotein (Nucleocapsid protein)|
          Length = 692

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = -3

Query: 220 LNLSPEESLSG*QILTVIHLDSVENYRGHLWLLLAWCS 107
           L++SP E      IL +  L+S E+ RG + L L++CS
Sbjct: 100 LDVSPNEPHYSPLILALKTLESTESQRGRIGLFLSFCS 137

>ATM_SCHPO (O74630) Serine/threonine-protein kinase tel1 (EC 2.7.11.1)|
            (DNA-damage checkpoint kinase tel1) (Telomere length
            regulation protein 1) (ATM homolog)
          Length = 2812

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
 Frame = -2

Query: 320  REGKEEESREIGDAQAERGCCKIRWK---HLSLEALTQPFPRGELVRITDINSY 168
            R+ K + +   G+++AER   K+R K    LS+EA       GEL+RI    SY
Sbjct: 2752 RDPKIQRNNVSGESEAERAILKVRQKLSSTLSVEASV-----GELIRIAQDPSY 2800

>SRE37_CAEEL (O17818) Serpentine receptor class epsilon-37 (Protein sre-37)|
          Length = 362

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +3

Query: 54  ITKYQLLRIIWIFLYRRVLHHAKSSQRC 137
           +T Y L+RI WIFL  +V H   +   C
Sbjct: 43  LTGYILVRICWIFLTIKVFHDNMNIMMC 70


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,030,173
Number of Sequences: 219361
Number of extensions: 792444
Number of successful extensions: 2039
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2019
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2039
length of database: 80,573,946
effective HSP length: 89
effective length of database: 61,050,817
effective search space used: 1465219608
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)