ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd20b09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY377991.1| Triticum aestivum chloroplast-localized Ptr ToxA-... 462 e-127
2gb|AY736122.1| Triticum aestivum chloroplast inositol phosphatas... 200 2e-48
3ref|XM_478693.1| Oryza sativa (japonica cultivar-group), mRNA 64 3e-07
4gb|AY224446.1| Oryza sativa (japonica cultivar-group) isolate 23... 64 3e-07
5dbj|AK064914.1| Oryza sativa (japonica cultivar-group) cDNA clon... 64 3e-07
6dbj|AK059695.1| Oryza sativa (japonica cultivar-group) cDNA clon... 64 3e-07
7gb|AC121803.3| Mus musculus BAC clone RP23-441A23 from chromosom... 44 0.29
8dbj|AP004491.1| Lotus japonicus genomic DNA, chromosome 1, clone... 44 0.29
9ref|NM_127659.1| Arabidopsis thaliana THF1 AT2G20890 (THF1) mRNA... 42 1.1
10gb|AC105487.6| Rattus norvegicus 1 BAC CH230-229J7 (Children's H... 42 1.1
11gb|AY081596.1| Arabidopsis thaliana unknown protein (At2g20890) ... 42 1.1
12gb|AY062799.1| Arabidopsis thaliana Unknown protein (At2g20890; ... 42 1.1
13dbj|AK078026.1| Mus musculus 11 days embryo head cDNA, RIKEN ful... 42 1.1
14gb|AC113955.20| Mus musculus chromosome 7, clone RP23-402K24, co... 42 1.1
15emb|BX818803.1|CNS0A8TL Arabidopsis thaliana Full-length cDNA Co... 42 1.1
16emb|BX820185.1|CNS0A8J4 Arabidopsis thaliana Full-length cDNA Co... 42 1.1
17emb|BX820020.1|CNS0A8FF Arabidopsis thaliana Full-length cDNA Co... 42 1.1
18gb|AY087394.1| Arabidopsis thaliana clone 34875 mRNA, complete s... 42 1.1
19emb|AL683856.10| Mouse DNA sequence from clone RP23-46J2 on chro... 42 1.1
20gb|AY899908.1| Arabidopsis thaliana chloroplast thylakoid format... 42 1.1
21gb|AC117787.8| Mus musculus chromosome 1, clone RP24-546N2, comp... 40 4.5
22gb|AC113968.12| Mus musculus chromosome 8, clone RP23-120M17, co... 40 4.5
23gb|AC116812.10| Mus musculus chromosome 15, clone RP24-357G13, c... 40 4.5
24gb|AC099572.12| Mus musculus chromosome 15, clone RP23-16A17, co... 40 4.5
25gb|AC116871.6| Mus musculus chromosome 19, clone RP24-417P12, co... 40 4.5
26ref|NG_000008.6| Homo sapiens cytochrome P450, family 2, subfami... 40 4.5
27gb|AC089992.2| Bos taurus clone RP42-210F11, complete sequence 40 4.5
28gb|AC164532.4| Mus musculus chromosome 7, clone RP24-64B10, comp... 40 4.5
29gb|DP000008.1| Bos taurus target 1 genomic scaffold 40 4.5
30ref|XM_947168.1| Theileria annulata strain Ankara exonuclease (T... 40 4.5
31emb|CR854896.11| Zebrafish DNA sequence from clone DKEY-239B8 in... 40 4.5
32emb|AL772182.3| Human DNA sequence from clone RP11-36K22 on chro... 40 4.5
33gb|AC128353.6| Rattus norvegicus 13 BAC CH230-148A5 (Children's ... 40 4.5
34emb|AL161624.7| Human DNA sequence from clone RP11-487I9 on chro... 40 4.5
35emb|BX842632.1| Neurospora crassa DNA linkage group I BAC contig... 40 4.5
36emb|BX901922.9| Zebrafish DNA sequence from clone DKEY-33C12 in ... 40 4.5
37emb|BX000359.7| Mouse DNA sequence from clone RP23-343C18 on chr... 40 4.5
38gb|AC073531.22| Homo sapiens 12 BAC RP11-802J22 (Roswell Park Ca... 40 4.5
39emb|AL845307.29| Zebrafish DNA sequence from clone DKEY-56N17 in... 40 4.5
40emb|CR848040.6| Zebrafish DNA sequence from clone DKEY-19P15 in ... 40 4.5
41gb|AF479287.1| Mus musculus PHF5B (Phf5b) pseudogene, complete s... 40 4.5
42gb|AC074312.64| Mus musculus strain C57BL/6J clone rp23-311c19 m... 40 4.5
43gb|AC099538.2| Homo sapiens chromosome 3 clone RP11-90I9, comple... 40 4.5
44dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.5
45gb|AC008537.5|AC008537 Homo sapiens chromosome 19 clone CTC-490E... 40 4.5
46gb|AC099053.2| Homo sapiens chromosome 3 clone RP11-464H2, compl... 40 4.5
47gb|AC023795.18| Homo sapiens 12 BAC RP11-242B24 (Roswell Park Ca... 40 4.5
48dbj|AK173094.1| Mus musculus premature mRNA for mKIAA1067 protein 40 4.5
49gb|AC153611.12| Mus musculus 6 BAC RP23-110P14 (Roswell Park Can... 40 4.5
50emb|AL929156.10| Mouse DNA sequence from clone RP23-475H18 on ch... 40 4.5
51gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 4.5
52emb|AL732639.5|CNS08C9E Oryza sativa chromosome 12, . BAC OSJNBa... 40 4.5
53gb|L47539.1|HEACRP Haemophilus somnus cyclic AMP receptor protei... 40 4.5
54emb|AL645861.12| Mouse DNA sequence from clone RP23-184G6 on chr... 40 4.5
55dbj|AP001091.5| Homo sapiens genomic DNA, chromosome 18p clone:R... 40 4.5 
>gb|AY377991.1| Triticum aestivum chloroplast-localized Ptr ToxA-binding protein1
            (TaThf1) mRNA, complete cds; nuclear gene for chloroplast
            product
          Length = 1130

 Score =  462 bits (233), Expect = e-127
 Identities = 312/336 (92%), Gaps = 8/336 (2%)
 Strand = Plus / Minus

                                                                        
Query: 14   aagtgaagaaaacggtacattcgaacacagagaaggagaaattacaaaataccaac---- 69
            |||||||||||||| | |||||||||||||| |||||||||||||||||||||||     
Sbjct: 1082 aagtgaagaaaacgatccattcgaacacagacaaggagaaattacaaaataccaaactca 1023

                                                                        
Query: 70   -tactgcgaataatctggatctttttgtaccgccgagtactacac-cacgctaagagcag 127
             |||| |||||||||||||||||||||||| || ||||||||||| | ||| ||||||||
Sbjct: 1022 atactacgaataatctggatctttttgtacggcggagtactacactcgcgcgaagagcag 963

                                                                        
Query: 128  ccaaagatgcccccgatagttctcaacgctatccagatgt--ataactgttaatatctgt 185
            ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||
Sbjct: 962  ccaaagatgcccccgatagttctcaacgctatccagatgtgtataactgttaatatctgt 903

                                                                        
Query: 186  tatccggacaagctctcctctggggaaaggttgagttaatgcttcaagggataagtgctt 245
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 902  tatccggacaagctgtcctctggggaaaggttgagttaatgcttcaagggataagcgctt 843

                                                                        
Query: 246  ccatcgaattttgcaacagcctcgttcggcttgggcgtctccaatctctctgctctcttc 305
            ||||||||||||||||||||||| ||||||||||||||||||||||||||  ||||||||
Sbjct: 842  ccatcgaattttgcaacagcctcattcggcttgggcgtctccaatctctcctctctcttc 783

                                                
Query: 306  ttcttttccctctcgacgtattccttaagaagttcc 341
            |||||||||||||||| ||||||||| |||||||||
Sbjct: 782  ttcttttccctctcgatgtattccttgagaagttcc 747
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>gb|AY736122.1| Triticum aestivum chloroplast inositol phosphatase-like protein
           mRNA, complete cds; nuclear gene for chloroplast product
          Length = 909

 Score =  200 bits (101), Expect = 2e-48
 Identities = 122/129 (94%)
 Strand = Plus / Minus

                                                                       
Query: 213 aggttgagttaatgcttcaagggataagtgcttccatcgaattttgcaacagcctcgttc 272
           |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct: 909 aggttgagttaatgcttcaagggataagcgcttccatcgaattttgcaacagcctcattc 850

                                                                       
Query: 273 ggcttgggcgtctccaatctctctgctctcttcttcttttccctctcgacgtattcctta 332
           |||||||||||||||||||||||  ||||||||||||||||||||| || ||||||||| 
Sbjct: 849 ggcttgggcgtctccaatctctcctctctcttcttcttttccctcttgatgtattccttg 790

                    
Query: 333 agaagttcc 341
           |||||||||
Sbjct: 789 agaagttcc 781
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>ref|XM_478693.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1153

 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 41/44 (93%)
 Strand = Plus / Minus

                                                       
Query: 298 ctctcttcttcttttccctctcgacgtattccttaagaagttcc 341
           ||||||||||||||||||| || ||||||||||| |||||||||
Sbjct: 886 ctctcttcttcttttccctttccacgtattccttgagaagttcc 843
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>gb|AY224446.1| Oryza sativa (japonica cultivar-group) isolate 23045 inositol
           phosphatase-like protein mRNA, complete cds
          Length = 864

 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 41/44 (93%)
 Strand = Plus / Minus

                                                       
Query: 298 ctctcttcttcttttccctctcgacgtattccttaagaagttcc 341
           ||||||||||||||||||| || ||||||||||| |||||||||
Sbjct: 787 ctctcttcttcttttccctttccacgtattccttgagaagttcc 744
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>dbj|AK064914.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000M13, full
           insert sequence
          Length = 1152

 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 41/44 (93%)
 Strand = Plus / Minus

                                                       
Query: 298 ctctcttcttcttttccctctcgacgtattccttaagaagttcc 341
           ||||||||||||||||||| || ||||||||||| |||||||||
Sbjct: 885 ctctcttcttcttttccctttccacgtattccttgagaagttcc 842
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>dbj|AK059695.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-B12, full
            insert sequence
          Length = 1512

 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 41/44 (93%)
 Strand = Plus / Minus

                                                        
Query: 298  ctctcttcttcttttccctctcgacgtattccttaagaagttcc 341
            ||||||||||||||||||| || ||||||||||| |||||||||
Sbjct: 1121 ctctcttcttcttttccctttccacgtattccttgagaagttcc 1078
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>gb|AC121803.3| Mus musculus BAC clone RP23-441A23 from chromosome 6, complete sequence
          Length = 211809

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 298   ctctcttcttcttttccctctc 319
             ||||||||||||||||||||||
Sbjct: 68122 ctctcttcttcttttccctctc 68143
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>dbj|AP004491.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT17G08, TM0023,
             complete sequence
          Length = 91039

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 291   ctctctgctctcttcttctttt 312
             ||||||||||||||||||||||
Sbjct: 32616 ctctctgctctcttcttctttt 32595
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>ref|NM_127659.1| Arabidopsis thaliana THF1 AT2G20890 (THF1) mRNA, complete cds
          Length = 1246

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                            
Query: 302 cttcttcttttccctctcgacgtattccttaag 334
           ||||||||| ||||||||||| || ||||||||
Sbjct: 916 cttcttcttctccctctcgacatactccttaag 884
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>gb|AC105487.6| Rattus norvegicus 1 BAC CH230-229J7 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 221396

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 299   tctcttcttcttttccctctc 319
             |||||||||||||||||||||
Sbjct: 88719 tctcttcttcttttccctctc 88699
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>gb|AY081596.1| Arabidopsis thaliana unknown protein (At2g20890) mRNA, complete cds
          Length = 953

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                            
Query: 302 cttcttcttttccctctcgacgtattccttaag 334
           ||||||||| ||||||||||| || ||||||||
Sbjct: 801 cttcttcttctccctctcgacatactccttaag 769
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>gb|AY062799.1| Arabidopsis thaliana Unknown protein (At2g20890; F5H14.14) mRNA,
           complete cds
          Length = 1143

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                            
Query: 302 cttcttcttttccctctcgacgtattccttaag 334
           ||||||||| ||||||||||| || ||||||||
Sbjct: 911 cttcttcttctccctctcgacatactccttaag 879
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>dbj|AK078026.1| Mus musculus 11 days embryo head cDNA, RIKEN full-length enriched
            library, clone:6230415J03 product:unclassifiable, full
            insert sequence
          Length = 1787

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 299  tctcttcttcttttccctctc 319
            |||||||||||||||||||||
Sbjct: 1109 tctcttcttcttttccctctc 1089
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>gb|AC113955.20| Mus musculus chromosome 7, clone RP23-402K24, complete sequence
          Length = 196206

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 299    tctcttcttcttttccctctc 319
              |||||||||||||||||||||
Sbjct: 118373 tctcttcttcttttccctctc 118353
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>emb|BX818803.1|CNS0A8TL Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB15ZB02 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 324

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                            
Query: 302 cttcttcttttccctctcgacgtattccttaag 334
           ||||||||| ||||||||||| || ||||||||
Sbjct: 88  cttcttcttctccctctcgacatactccttaag 56
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>emb|BX820185.1|CNS0A8J4 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS88ZH01 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1158

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                            
Query: 302 cttcttcttttccctctcgacgtattccttaag 334
           ||||||||| ||||||||||| || ||||||||
Sbjct: 905 cttcttcttctccctctcgacatactccttaag 873
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>emb|BX820020.1|CNS0A8FF Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS62ZD04 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1131

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                            
Query: 302 cttcttcttttccctctcgacgtattccttaag 334
           ||||||||| ||||||||||| || ||||||||
Sbjct: 877 cttcttcttctccctctcgacatactccttaag 845
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>gb|AY087394.1| Arabidopsis thaliana clone 34875 mRNA, complete sequence
          Length = 1246

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                            
Query: 302 cttcttcttttccctctcgacgtattccttaag 334
           ||||||||| ||||||||||| || ||||||||
Sbjct: 916 cttcttcttctccctctcgacatactccttaag 884
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>emb|AL683856.10| Mouse DNA sequence from clone RP23-46J2 on chromosome X, complete
              sequence
          Length = 224461

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 299    tctcttcttcttttccctctc 319
              |||||||||||||||||||||
Sbjct: 158791 tctcttcttcttttccctctc 158771
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>gb|AY899908.1| Arabidopsis thaliana chloroplast thylakoid formation 1 (THF1) mRNA,
           complete cds; nuclear gene for chloroplast product
          Length = 1245

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                            
Query: 302 cttcttcttttccctctcgacgtattccttaag 334
           ||||||||| ||||||||||| || ||||||||
Sbjct: 915 cttcttcttctccctctcgacatactccttaag 883
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>gb|AC117787.8| Mus musculus chromosome 1, clone RP24-546N2, complete sequence
          Length = 203962

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 292    tctctgctctcttcttcttttccc 315
              ||||||||||||||| ||||||||
Sbjct: 129668 tctctgctctcttctccttttccc 129691
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>gb|AC113968.12| Mus musculus chromosome 8, clone RP23-120M17, complete sequence
          Length = 220191

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 299   tctcttcttcttttccctct 318
             ||||||||||||||||||||
Sbjct: 16214 tctcttcttcttttccctct 16195
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>gb|AC116812.10| Mus musculus chromosome 15, clone RP24-357G13, complete sequence
          Length = 183993

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 290   tctctctgctctcttcttct 309
             ||||||||||||||||||||
Sbjct: 22366 tctctctgctctcttcttct 22385
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>gb|AC099572.12| Mus musculus chromosome 15, clone RP23-16A17, complete sequence
          Length = 200229

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 290  tctctctgctctcttcttct 309
            ||||||||||||||||||||
Sbjct: 5312 tctctctgctctcttcttct 5293
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>gb|AC116871.6| Mus musculus chromosome 19, clone RP24-417P12, complete sequence
          Length = 161959

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 290   tctctctgctctcttcttct 309
             ||||||||||||||||||||
Sbjct: 49162 tctctctgctctcttcttct 49181
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>ref|NG_000008.6| Homo sapiens cytochrome P450, family 2, subfamily A (CYP2A) on
             chromosome 19
          Length = 413528

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 289   atctctctgctctcttcttctttt 312
             ||||||||||| ||||||||||||
Sbjct: 20020 atctctctgctgtcttcttctttt 20043
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>gb|AC089992.2| Bos taurus clone RP42-210F11, complete sequence
          Length = 147922

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 290   tctctctgctctcttcttct 309
             ||||||||||||||||||||
Sbjct: 69562 tctctctgctctcttcttct 69581
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>gb|AC164532.4| Mus musculus chromosome 7, clone RP24-64B10, complete sequence
          Length = 206573

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 290   tctctctgctctcttcttct 309
             ||||||||||||||||||||
Sbjct: 75337 tctctctgctctcttcttct 75356
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>gb|DP000008.1| Bos taurus target 1 genomic scaffold
          Length = 2072671

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 290     tctctctgctctcttcttct 309
               ||||||||||||||||||||
Sbjct: 1297735 tctctctgctctcttcttct 1297754
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>ref|XM_947168.1| Theileria annulata strain Ankara exonuclease (TA13280) partial mRNA
          Length = 3363

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 309 ttttccctctcgacgtattcctta 332
           |||||||||||||| |||||||||
Sbjct: 956 ttttccctctcgacatattcctta 933
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>emb|CR854896.11| Zebrafish DNA sequence from clone DKEY-239B8 in linkage group 13,
              complete sequence
          Length = 165556

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 290    tctctctgctctcttcttct 309
              ||||||||||||||||||||
Sbjct: 100624 tctctctgctctcttcttct 100605



 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 290   tctctctgctctcttcttct 309
             ||||||||||||||||||||
Sbjct: 71564 tctctctgctctcttcttct 71545
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>emb|AL772182.3| Human DNA sequence from clone RP11-36K22 on chromosome X, complete
             sequence
          Length = 161047

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 284   ctccaatctctctgctctct 303
             ||||||||||||||||||||
Sbjct: 36550 ctccaatctctctgctctct 36531
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>gb|AC128353.6| Rattus norvegicus 13 BAC CH230-148A5 (Children's Hospital Oakland
              Research Institute) complete sequence
          Length = 207556

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 296    tgctctcttcttcttttccctctc 319
              |||||||||||||| |||||||||
Sbjct: 122070 tgctctcttcttctcttccctctc 122047
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>emb|AL161624.7| Human DNA sequence from clone RP11-487I9 on chromosome X Contains part
             of the DIAPH2 gene for Drosophila diaphanous homolog 2 and
             the 3' end of a novel gene (EPAG), complete sequence
          Length = 133021

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 164   atgtataactgttaatatct 183
             ||||||||||||||||||||
Sbjct: 49628 atgtataactgttaatatct 49609
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>emb|BX842632.1| Neurospora crassa DNA linkage group I BAC contig B5K2
          Length = 86737

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 110   acaccacgctaagagcagcc 129
             ||||||||||||||||||||
Sbjct: 41587 acaccacgctaagagcagcc 41568
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>emb|BX901922.9| Zebrafish DNA sequence from clone DKEY-33C12 in linkage group 13,
              complete sequence
          Length = 242350

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 290    tctctctgctctcttcttct 309
              ||||||||||||||||||||
Sbjct: 187137 tctctctgctctcttcttct 187156



 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 290    tctctctgctctcttcttct 309
              ||||||||||||||||||||
Sbjct: 157745 tctctctgctctcttcttct 157764
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>emb|BX000359.7| Mouse DNA sequence from clone RP23-343C18 on chromosome 11 Contains the
             gene for a novel helix-loop-helix DNA-binding domain
             containing protein, a novel gene, the Gosr1 gene for golgi
             SNAP receptor complex member 1 and a CpG island, complete
             sequence
          Length = 118586

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 298   ctctcttcttcttttccctc 317
             ||||||||||||||||||||
Sbjct: 34246 ctctcttcttcttttccctc 34265
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>gb|AC073531.22| Homo sapiens 12 BAC RP11-802J22 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 212172

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 36    gaacacagagaaggagaaat 55
             ||||||||||||||||||||
Sbjct: 65255 gaacacagagaaggagaaat 65236
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>emb|AL845307.29| Zebrafish DNA sequence from clone DKEY-56N17 in linkage group 13,
              complete sequence
          Length = 135795

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 290    tctctctgctctcttcttct 309
              ||||||||||||||||||||
Sbjct: 120423 tctctctgctctcttcttct 120442
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>emb|CR848040.6| Zebrafish DNA sequence from clone DKEY-19P15 in linkage group 13,
             complete sequence
          Length = 146215

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 290   tctctctgctctcttcttct 309
             ||||||||||||||||||||
Sbjct: 40145 tctctctgctctcttcttct 40164
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>gb|AF479287.1| Mus musculus PHF5B (Phf5b) pseudogene, complete sequence
          Length = 5285

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 290  tctctctgctctcttcttct 309
            ||||||||||||||||||||
Sbjct: 3719 tctctctgctctcttcttct 3738
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>gb|AC074312.64| Mus musculus strain C57BL/6J clone rp23-311c19 map 7, complete sequence
          Length = 220077

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 290   tctctctgctctcttcttct 309
             ||||||||||||||||||||
Sbjct: 37435 tctctctgctctcttcttct 37416
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>gb|AC099538.2| Homo sapiens chromosome 3 clone RP11-90I9, complete sequence
          Length = 170033

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 215  gttgagttaatgcttcaagg 234
            ||||||||||||||||||||
Sbjct: 6476 gttgagttaatgcttcaagg 6495
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 290      tctctctgctctcttcttcttttc 313
                ||||||| ||||||||||||||||
Sbjct: 16997189 tctctctcctctcttcttcttttc 16997166



 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 290      tctctctgctctcttcttcttttc 313
                ||||||| ||||||||||||||||
Sbjct: 16976888 tctctctcctctcttcttcttttc 16976865
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>gb|AC008537.5|AC008537 Homo sapiens chromosome 19 clone CTC-490E21, complete sequence
          Length = 169089

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 289   atctctctgctctcttcttctttt 312
             ||||||||||| ||||||||||||
Sbjct: 41020 atctctctgctgtcttcttctttt 41043
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>gb|AC099053.2| Homo sapiens chromosome 3 clone RP11-464H2, complete sequence
          Length = 200069

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 215    gttgagttaatgcttcaagg 234
              ||||||||||||||||||||
Sbjct: 172320 gttgagttaatgcttcaagg 172339
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>gb|AC023795.18| Homo sapiens 12 BAC RP11-242B24 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 161838

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 293    ctctgctctcttcttctttt 312
              ||||||||||||||||||||
Sbjct: 101981 ctctgctctcttcttctttt 102000
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>dbj|AK173094.1| Mus musculus premature mRNA for mKIAA1067 protein
          Length = 6719

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 291  ctctctgctctcttcttctt 310
            ||||||||||||||||||||
Sbjct: 1932 ctctctgctctcttcttctt 1951
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>gb|AC153611.12| Mus musculus 6 BAC RP23-110P14 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 174538

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 290   tctctctgctctcttcttct 309
             ||||||||||||||||||||
Sbjct: 67099 tctctctgctctcttcttct 67118
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>emb|AL929156.10| Mouse DNA sequence from clone RP23-475H18 on chromosome 2, complete
              sequence
          Length = 206918

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 300    ctcttcttcttttccctctc 319
              ||||||||||||||||||||
Sbjct: 117334 ctcttcttcttttccctctc 117353
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 290      tctctctgctctcttcttcttttc 313
                ||||||| ||||||||||||||||
Sbjct: 16950422 tctctctcctctcttcttcttttc 16950399



 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 290      tctctctgctctcttcttcttttc 313
                ||||||| ||||||||||||||||
Sbjct: 16930121 tctctctcctctcttcttcttttc 16930098
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>emb|AL732639.5|CNS08C9E Oryza sativa chromosome 12, . BAC OSJNBa0038H18 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 150238

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 290    tctctctgctctcttcttcttttc 313
              ||||||| ||||||||||||||||
Sbjct: 119232 tctctctcctctcttcttcttttc 119209



 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 290   tctctctgctctcttcttcttttc 313
             ||||||| ||||||||||||||||
Sbjct: 98931 tctctctcctctcttcttcttttc 98908
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>gb|L47539.1|HEACRP Haemophilus somnus cyclic AMP receptor protein (crp) gene, complete
           cds
          Length = 752

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 261 acagcctcgttcggcttggg 280
           ||||||||||||||||||||
Sbjct: 359 acagcctcgttcggcttggg 378
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>emb|AL645861.12| Mouse DNA sequence from clone RP23-184G6 on chromosome 11, complete
             sequence
          Length = 212385

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 291   ctctctgctctcttcttctt 310
             ||||||||||||||||||||
Sbjct: 47200 ctctctgctctcttcttctt 47181
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>dbj|AP001091.5| Homo sapiens genomic DNA, chromosome 18p clone:RP11-713N19, complete
             sequences
          Length = 207785

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 300   ctcttcttcttttccctctc 319
             ||||||||||||||||||||
Sbjct: 13020 ctcttcttcttttccctctc 13039


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,394,092
Number of Sequences: 3902068
Number of extensions: 3394092
Number of successful extensions: 77891
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 77735
Number of HSP's gapped (non-prelim): 154
length of query: 342
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 320
effective length of database: 17,147,199,772
effective search space: 5487103927040
effective search space used: 5487103927040
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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