>RFC3_HUMAN (P40938) Activator 1 38 kDa subunit (Replication factor C 38 kDa|
           subunit) (A1 38 kDa subunit) (RF-C 38 kDa subunit)
           (RFC38) (Replication factor C subunit 3)
          Length = 356

 Score =  154 bits (388), Expect = 2e-37
 Identities = 74/136 (54%), Positives = 97/136 (71%)
 Frame = -2

Query: 588 AARIAAQSXRNLRRAILFFETCKVQQYPFSANQVAPPLDWEQYVSEIATEILSEQSPKRL 409
           A R+A +S RNLR+A+L  E C+VQQYPF+A+Q  P  DWE Y+ E A  I+S+Q+P+RL
Sbjct: 212 AHRLAEKSCRNLRKALLMCEACRVQQYPFTADQEIPETDWEVYLRETANAIVSQQTPQRL 271

Query: 408 YSVRQKFYELLVNCIPPESIXXXXXXXXXXXLDSDLKHEVCHWAAHYEHKMRLGSKAIFH 229
             VR + YELL +CIPPE I            D  LK EV   AA+YEH+++LGSKAI+H
Sbjct: 272 LEVRGRLYELLTHCIPPEIIMKGLLSELLHNCDGQLKGEVAQMAAYYEHRLQLGSKAIYH 331

Query: 228 LEAFVAKFMSIYKEFL 181
           LEAFVAKFM++YK+F+
Sbjct: 332 LEAFVAKFMALYKKFM 347

>RFC3_MOUSE (Q8R323) Activator 1 38 kDa subunit (Replication factor C 38 kDa|
           subunit) (A1 38 kDa subunit) (RF-C 38 kDa subunit)
           (RFC38) (Replication factor C subunit 3)
          Length = 356

 Score =  152 bits (384), Expect = 7e-37
 Identities = 73/136 (53%), Positives = 96/136 (70%)
 Frame = -2

Query: 588 AARIAAQSXRNLRRAILFFETCKVQQYPFSANQVAPPLDWEQYVSEIATEILSEQSPKRL 409
           A R+A +S RNLR+A+L  E C+VQQYPF+ +Q  P  DWE Y+ E A  I+S+Q+P+RL
Sbjct: 212 ARRLAEKSCRNLRKALLMCEACRVQQYPFTEDQEIPETDWEVYLRETANAIVSQQTPQRL 271

Query: 408 YSVRQKFYELLVNCIPPESIXXXXXXXXXXXLDSDLKHEVCHWAAHYEHKMRLGSKAIFH 229
             VR + YELL +CIPPE I            D  LK EV   AA+YEH+++LGSKAI+H
Sbjct: 272 LEVRGRLYELLTHCIPPEIIMKGLLSELLHNCDGQLKGEVAQMAAYYEHRLQLGSKAIYH 331

Query: 228 LEAFVAKFMSIYKEFL 181
           LEAFVAKFM++YK+F+
Sbjct: 332 LEAFVAKFMALYKKFM 347

>RFC5_NEUCR (Q8X082) Probable activator 1 subunit 5 (Replication factor C|
           subunit 5) (Replication factor C5)
          Length = 352

 Score =  124 bits (311), Expect = 2e-28
 Identities = 61/134 (45%), Positives = 83/134 (61%)
 Frame = -2

Query: 582 RIAAQSXRNLRRAILFFETCKVQQYPFSANQVAPPLDWEQYVSEIATEILSEQSPKRLYS 403
           RIA +S RNLRRA+L +E    Q    + +   PP DWE  + +IA EI+ E +P R+  
Sbjct: 214 RIAEESGRNLRRALLMYEAVYAQNEKVTDSTPIPPPDWEALIGQIAKEIMEEHTPARILQ 273

Query: 402 VRQKFYELLVNCIPPESIXXXXXXXXXXXLDSDLKHEVCHWAAHYEHKMRLGSKAIFHLE 223
           VR K Y+LL +CIP   I           +D  LK +V +W+A YEH++R G+K IFHLE
Sbjct: 274 VRAKLYDLLTHCIPATIILKTLTFKLIPLIDDALKADVIYWSAFYEHRIRTGTKVIFHLE 333

Query: 222 AFVAKFMSIYKEFL 181
           AFVAKFM I++ +L
Sbjct: 334 AFVAKFMRIFEMYL 347

>RFC5_SCHPO (O94697) Probable activator 1 subunit 5 (Replication factor C|
           subunit 5) (Replication factor C5)
          Length = 358

 Score = 99.8 bits (247), Expect = 5e-21
 Identities = 52/133 (39%), Positives = 75/133 (56%), Gaps = 4/133 (3%)
 Frame = -2

Query: 579 IAAQSXRNLRRAILFFETCKVQ----QYPFSANQVAPPLDWEQYVSEIATEILSEQSPKR 412
           IA    RNLR+AIL  ET   +    +         P  DW+ ++ ++   +L EQSP R
Sbjct: 214 IANNCDRNLRKAILLLETVHAKSPGNKQLIDTGAQLPLPDWQTFIQQVGDSMLQEQSPAR 273

Query: 411 LYSVRQKFYELLVNCIPPESIXXXXXXXXXXXLDSDLKHEVCHWAAHYEHKMRLGSKAIF 232
           + +VR   Y+LL +CIPP +I           +D+ L   +   AA+YEH+ R+G+K+IF
Sbjct: 274 ILAVRSMLYDLLSHCIPPTTILKELLSFFLSKVDTKLHPYLIQAAANYEHRTRMGNKSIF 333

Query: 231 HLEAFVAKFMSIY 193
           HLEAFVA FM +Y
Sbjct: 334 HLEAFVAYFMKVY 346

>RFC5_YEAST (P38251) Activator 1 40 kDa subunit (Replication factor C subunit|
           5) (Replication factor C5)
          Length = 354

 Score = 61.2 bits (147), Expect = 2e-09
 Identities = 40/131 (30%), Positives = 67/131 (51%), Gaps = 4/131 (3%)
 Frame = -2

Query: 582 RIAAQSXRNLRRAILFFETCKVQQYPF--SANQVAPPLDWEQYVSEIATEILSEQSPKRL 409
           RIA  S  NLR ++L  E+  +       S++ +  P DW   + ++  +I+ E+S   L
Sbjct: 221 RIAQASNGNLRVSLLMLESMALNNELALKSSSPIIKP-DWIIVIHKLTRKIVKERSVNSL 279

Query: 408 YSVRQKFYELLVNCIPPESIXXXXXXXXXX--XLDSDLKHEVCHWAAHYEHKMRLGSKAI 235
              R   Y+LL +CIP   I             L++  K  +  +++ ++ ++ LG+KAI
Sbjct: 280 IECRAVLYDLLAHCIPANIILKELTFSLLDVETLNTTNKSSIIEYSSVFDERLSLGNKAI 339

Query: 234 FHLEAFVAKFM 202
           FHLE F+AK M
Sbjct: 340 FHLEGFIAKVM 350

>ATPG_PROMA (Q7VA64) ATP synthase gamma chain (EC 3.6.3.14) (ATP synthase F1|
           sector gamma subunit)
          Length = 316

 Score = 30.0 bits (66), Expect = 5.2
 Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
 Frame = -2

Query: 552 RRAILFFETCKVQQYPFSAN-----QVAPPLDWEQYVSEIATEILSEQSPKRLYSVRQKF 388
           R+AI +F+  +  QY   A+     QV    D E+  SE+ +E LSE S  R+  +  KF
Sbjct: 122 RKAITYFQN-RSSQYKIRASFQDLEQVPTSKDAEEATSEVLSEFLSE-STDRVEIIYTKF 179

Query: 387 YELLVNCIP 361
              LV+C P
Sbjct: 180 IS-LVSCDP 187

>PHR_CARAU (P34205) Deoxyribodipyrimidine photo-lyase (EC 4.1.99.3) (DNA|
           photolyase) (Photoreactivating enzyme)
          Length = 556

 Score = 30.0 bits (66), Expect = 5.2
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -2

Query: 519 VQQYPFSANQVAPPLDWEQYVSEIATE 439
           V  +P SA++ A P+DWE+ +S +  E
Sbjct: 272 VDTHPHSASRAAEPVDWEEVLSSLEVE 298


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,579,305
Number of Sequences: 219361
Number of extensions: 1403158
Number of successful extensions: 3289
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3286
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 5101629520
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)