ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd20b05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_469953.1| Oryza sativa (japonica cultivar-group), mRNA 458 e-125
2dbj|AK103751.1| Oryza sativa (japonica cultivar-group) cDNA clon... 458 e-125
3dbj|AK059559.1| Oryza sativa (japonica cultivar-group) cDNA clon... 458 e-125
4dbj|AB109201.1| Oryza sativa (japonica cultivar-group) OsRFC5 mR... 458 e-125
5gb|AY105201.1| Zea mays PCO093185 mRNA sequence 343 4e-91
6gb|BT017250.1| Zea mays clone EL01N0307D02.c mRNA sequence 333 4e-88
7gb|AC090871.11| Oryza sativa chromosome 3 BAC OSJNBb0060J21 geno... 103 6e-19
8gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 103 6e-19
9dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 103 6e-19
10gb|AC159612.1| Zea mays chromosome 5S clone ZMMBBb0511I12 map bi... 96 2e-16
11gb|AY559232.1| Zea mays isolate mon00212 Ac insertion site 90 1e-14
12ref|XM_796686.1| PREDICTED: Strongylocentrotus purpuratus simila... 64 6e-07
13ref|XM_774819.1| PREDICTED: Strongylocentrotus purpuratus simila... 64 6e-07
14gb|BT014244.1| Lycopersicon esculentum clone 133445R, mRNA sequence 54 5e-04
15ref|NM_122656.3| Arabidopsis thaliana DNA binding / nucleoside-t... 46 0.13
16gb|AY091236.1| Arabidopsis thaliana putative replication factor ... 46 0.13
17gb|AY074381.1| Arabidopsis thaliana putative replication factor ... 46 0.13
18emb|BX832152.1|CNS0A1N0 Arabidopsis thaliana Full-length cDNA Co... 46 0.13
19emb|BX831280.1|CNS09YRN Arabidopsis thaliana Full-length cDNA Co... 46 0.13
20gb|AC069556.4|AC069556 Genomic Sequence For Arabidopsis thaliana... 46 0.13
21ref|XM_778423.1| PREDICTED: Strongylocentrotus purpuratus hypoth... 44 0.51
22ref|XM_722985.1| Plasmodium yoelii yoelii str. 17XNL hypothetica... 42 2.0
23emb|AL365334.13| Mouse DNA sequence from clone RP23-392F1 on chr... 42 2.0
24gb|AC155164.5| Mus musculus BAC clone RP24-74L7 from chromosome ... 40 8.0
25ref|NG_005114.1| Homo sapiens coagulation factor VIII region (F8... 40 8.0
26emb|Z74029.1|CEC45B11 Caenorhabditis elegans Cosmid C45B11, comp... 40 8.0
27emb|AL731576.9| Human DNA sequence from clone RP11-178G16 on chr... 40 8.0
28emb|BX293995.4| Human DNA sequence from clone RP11-143H17 on chr... 40 8.0
29emb|CR859371.1| Pongo pygmaeus mRNA; cDNA DKFZp459H1729 (from cl... 40 8.0
30emb|CR615605.1| full-length cDNA clone CS0DK011YL11 of HeLa cell... 40 8.0
31dbj|AK055524.1| Homo sapiens cDNA FLJ30962 fis, clone HCASM2000560 40 8.0
32emb|CR593339.1| full-length cDNA clone CS0DK005YF08 of HeLa cell... 40 8.0
33emb|CR406153.1| Gallus gallus finished cDNA, clone ChEST851b23 40 8.0
34ref|NM_073410.2| Caenorhabditis elegans C45B11.2 (C45B11.2) mRNA... 40 8.0
35gb|AC139493.3| Homo sapiens chromosome 5 clone RP11-844P9, compl... 40 8.0
36gb|AC138956.3| Homo sapiens chromosome 5 clone RP11-843P14, comp... 40 8.0
37emb|BX950459.1| Gallus gallus finished cDNA, clone ChEST911a20 40 8.0
38gb|AC005036.1| Homo sapiens BAC clone RP11-364H22 from 2, comple... 40 8.0
39emb|AL953899.7| Zebrafish DNA sequence from clone CH211-233N24, ... 40 8.0
40emb|BX005484.7| Zebrafish DNA sequence from clone DKEY-25G12, co... 40 8.0
41emb|BX548157.5| Zebrafish DNA sequence from clone CH211-201B11 i... 40 8.0
42gb|AC159217.3| Pan troglodytes BAC clone CH251-347C9 from chromo... 40 8.0
43emb|CT573417.1| Pan troglodytes chromosome X clone PTB-001B13 ma... 40 8.0
44gb|BC002999.1| Homo sapiens BRCA1/BRCA2-containing complex, subu... 40 8.0
45gb|BC006540.2| Homo sapiens BRCA1/BRCA2-containing complex, subu... 40 8.0
46emb|AL928673.4| Mouse DNA sequence from clone RP23-139B13 on chr... 40 8.0
47emb|AL135745.5|CNS01DVD Human chromosome 14 DNA sequence BAC C-2... 40 8.0
48ref|NM_001018055.1| Homo sapiens chromosome X open reading frame... 40 8.0
49ref|NM_024332.2| Homo sapiens chromosome X open reading frame 53... 40 8.0 
>ref|XM_469953.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1326

 Score =  458 bits (231), Expect = e-125
 Identities = 359/402 (89%)
 Strand = Plus / Minus

                                                                        
Query: 188  tccttgtaaatgctcatgaacttggccacgaaagcttccagatgaaaaatggccttggac 247
            |||||||| ||||||||||||||||| ||||||||||| || ||||||||||||||||||
Sbjct: 1136 tccttgtagatgctcatgaacttggcgacgaaagcttctaggtgaaaaatggccttggac 1077

                                                                        
Query: 248  ccaagtcgcatcttgtgttcatagtgtgcagcccagtgacaaacttcatgcttcaaatca 307
            ||||| ||||||||||||||||||||||||||||||||||||| |||||| ||||| |||
Sbjct: 1076 ccaagacgcatcttgtgttcatagtgtgcagcccagtgacaaatttcatgtttcaagtca 1017

                                                                        
Query: 308  gagtctaacttcttcattaactcggttaacaacttcttcaagatgctttcaggtgggata 367
            |||||||| ||||||| |||||| |  ||||||||||| |||||||||||||||||||||
Sbjct: 1016 gagtctaatttcttcagtaactccgccaacaacttctttaagatgctttcaggtgggata 957

                                                                        
Query: 368  caattcacaagtaactcgtagaatttctggcgtacagaatatagccttttagggctttgt 427
            |||||||||||||| |||||||| |||||||| |||| | ||||||||||||||||||||
Sbjct: 956  caattcacaagtaattcgtagaacttctggcgcacagcaaatagccttttagggctttgt 897

                                                                        
Query: 428  tcactcaagatttcagttgctatttcagacacatactgctcccagtcaagaggaggcgcc 487
            ||  ||| ||| |||| ||||||||| |||||||| |||||||||||||||||||| || 
Sbjct: 896  tctttcatgatatcagctgctatttctgacacatattgctcccagtcaagaggaggtgct 837

                                                                        
Query: 488  acttgatttgctgaaaatggatattgctggactttgcatgtctcaaagaataatattgct 547
            |||||||||| || |||||| ||||||||||||||||| |||||||| || | ||| |||
Sbjct: 836  acttgatttgatgtaaatgggtattgctggactttgcaggtctcaaaaaacagtatcgct 777

                                                      
Query: 548  cgcctcaagttgcggnttgattgagctgctatccgagcagca 589
            || |||| ||| ||| | ||||| |||||||||| |||||||
Sbjct: 776  cgtctcaggttacggttcgattgtgctgctatcctagcagca 735
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>dbj|AK103751.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033142O15, full
            insert sequence
          Length = 1327

 Score =  458 bits (231), Expect = e-125
 Identities = 359/402 (89%)
 Strand = Plus / Minus

                                                                        
Query: 188  tccttgtaaatgctcatgaacttggccacgaaagcttccagatgaaaaatggccttggac 247
            |||||||| ||||||||||||||||| ||||||||||| || ||||||||||||||||||
Sbjct: 1137 tccttgtagatgctcatgaacttggcgacgaaagcttctaggtgaaaaatggccttggac 1078

                                                                        
Query: 248  ccaagtcgcatcttgtgttcatagtgtgcagcccagtgacaaacttcatgcttcaaatca 307
            ||||| ||||||||||||||||||||||||||||||||||||| |||||| ||||| |||
Sbjct: 1077 ccaagacgcatcttgtgttcatagtgtgcagcccagtgacaaatttcatgtttcaagtca 1018

                                                                        
Query: 308  gagtctaacttcttcattaactcggttaacaacttcttcaagatgctttcaggtgggata 367
            |||||||| ||||||| |||||| |  ||||||||||| |||||||||||||||||||||
Sbjct: 1017 gagtctaatttcttcagtaactccgccaacaacttctttaagatgctttcaggtgggata 958

                                                                        
Query: 368  caattcacaagtaactcgtagaatttctggcgtacagaatatagccttttagggctttgt 427
            |||||||||||||| |||||||| |||||||| |||| | ||||||||||||||||||||
Sbjct: 957  caattcacaagtaattcgtagaacttctggcgcacagcaaatagccttttagggctttgt 898

                                                                        
Query: 428  tcactcaagatttcagttgctatttcagacacatactgctcccagtcaagaggaggcgcc 487
            ||  ||| ||| |||| ||||||||| |||||||| |||||||||||||||||||| || 
Sbjct: 897  tctttcatgatatcagctgctatttctgacacatattgctcccagtcaagaggaggtgct 838

                                                                        
Query: 488  acttgatttgctgaaaatggatattgctggactttgcatgtctcaaagaataatattgct 547
            |||||||||| || |||||| ||||||||||||||||| |||||||| || | ||| |||
Sbjct: 837  acttgatttgatgtaaatgggtattgctggactttgcaggtctcaaaaaacagtatcgct 778

                                                      
Query: 548  cgcctcaagttgcggnttgattgagctgctatccgagcagca 589
            || |||| ||| ||| | ||||| |||||||||| |||||||
Sbjct: 777  cgtctcaggttacggttcgattgtgctgctatcctagcagca 736
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>dbj|AK059559.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-029-G11, full
            insert sequence
          Length = 1257

 Score =  458 bits (231), Expect = e-125
 Identities = 359/402 (89%)
 Strand = Plus / Minus

                                                                        
Query: 188  tccttgtaaatgctcatgaacttggccacgaaagcttccagatgaaaaatggccttggac 247
            |||||||| ||||||||||||||||| ||||||||||| || ||||||||||||||||||
Sbjct: 1070 tccttgtagatgctcatgaacttggcgacgaaagcttctaggtgaaaaatggccttggac 1011

                                                                        
Query: 248  ccaagtcgcatcttgtgttcatagtgtgcagcccagtgacaaacttcatgcttcaaatca 307
            ||||| ||||||||||||||||||||||||||||||||||||| |||||| ||||| |||
Sbjct: 1010 ccaagacgcatcttgtgttcatagtgtgcagcccagtgacaaatttcatgtttcaagtca 951

                                                                        
Query: 308  gagtctaacttcttcattaactcggttaacaacttcttcaagatgctttcaggtgggata 367
            |||||||| ||||||| |||||| |  ||||||||||| |||||||||||||||||||||
Sbjct: 950  gagtctaatttcttcagtaactccgccaacaacttctttaagatgctttcaggtgggata 891

                                                                        
Query: 368  caattcacaagtaactcgtagaatttctggcgtacagaatatagccttttagggctttgt 427
            |||||||||||||| |||||||| |||||||| |||| | ||||||||||||||||||||
Sbjct: 890  caattcacaagtaattcgtagaacttctggcgcacagcaaatagccttttagggctttgt 831

                                                                        
Query: 428  tcactcaagatttcagttgctatttcagacacatactgctcccagtcaagaggaggcgcc 487
            ||  ||| ||| |||| ||||||||| |||||||| |||||||||||||||||||| || 
Sbjct: 830  tctttcatgatatcagctgctatttctgacacatattgctcccagtcaagaggaggtgct 771

                                                                        
Query: 488  acttgatttgctgaaaatggatattgctggactttgcatgtctcaaagaataatattgct 547
            |||||||||| || |||||| ||||||||||||||||| |||||||| || | ||| |||
Sbjct: 770  acttgatttgatgtaaatgggtattgctggactttgcaggtctcaaaaaacagtatcgct 711

                                                      
Query: 548  cgcctcaagttgcggnttgattgagctgctatccgagcagca 589
            || |||| ||| ||| | ||||| |||||||||| |||||||
Sbjct: 710  cgtctcaggttacggttcgattgtgctgctatcctagcagca 669
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>dbj|AB109201.1| Oryza sativa (japonica cultivar-group) OsRFC5 mRNA for replication
            factor C 38 kDa subunit, complete cds
          Length = 1327

 Score =  458 bits (231), Expect = e-125
 Identities = 359/402 (89%)
 Strand = Plus / Minus

                                                                        
Query: 188  tccttgtaaatgctcatgaacttggccacgaaagcttccagatgaaaaatggccttggac 247
            |||||||| ||||||||||||||||| ||||||||||| || ||||||||||||||||||
Sbjct: 1137 tccttgtagatgctcatgaacttggcgacgaaagcttctaggtgaaaaatggccttggac 1078

                                                                        
Query: 248  ccaagtcgcatcttgtgttcatagtgtgcagcccagtgacaaacttcatgcttcaaatca 307
            ||||| ||||||||||||||||||||||||||||||||||||| |||||| ||||| |||
Sbjct: 1077 ccaagacgcatcttgtgttcatagtgtgcagcccagtgacaaatttcatgtttcaagtca 1018

                                                                        
Query: 308  gagtctaacttcttcattaactcggttaacaacttcttcaagatgctttcaggtgggata 367
            |||||||| ||||||| |||||| |  ||||||||||| |||||||||||||||||||||
Sbjct: 1017 gagtctaatttcttcagtaactccgccaacaacttctttaagatgctttcaggtgggata 958

                                                                        
Query: 368  caattcacaagtaactcgtagaatttctggcgtacagaatatagccttttagggctttgt 427
            |||||||||||||| |||||||| |||||||| |||| | ||||||||||||||||||||
Sbjct: 957  caattcacaagtaattcgtagaacttctggcgcacagcaaatagccttttagggctttgt 898

                                                                        
Query: 428  tcactcaagatttcagttgctatttcagacacatactgctcccagtcaagaggaggcgcc 487
            ||  ||| ||| |||| ||||||||| |||||||| |||||||||||||||||||| || 
Sbjct: 897  tctttcatgatatcagctgctatttctgacacatattgctcccagtcaagaggaggtgct 838

                                                                        
Query: 488  acttgatttgctgaaaatggatattgctggactttgcatgtctcaaagaataatattgct 547
            |||||||||| || |||||| ||||||||||||||||| |||||||| || | ||| |||
Sbjct: 837  acttgatttgatgtaaatgggtattgctggactttgcaggtctcaaaaaacagtatcgct 778

                                                      
Query: 548  cgcctcaagttgcggnttgattgagctgctatccgagcagca 589
            || |||| ||| ||| | ||||| |||||||||| |||||||
Sbjct: 777  cgtctcaggttacggttcgattgtgctgctatcctagcagca 736
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>gb|AY105201.1| Zea mays PCO093185 mRNA sequence
          Length = 1261

 Score =  343 bits (173), Expect = 4e-91
 Identities = 308/353 (87%)
 Strand = Plus / Minus

                                                                       
Query: 182 aggaactccttgtaaatgctcatgaacttggccacgaaagcttccagatgaaaaatggcc 241
           |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |||
Sbjct: 716 aggaactccttgtaaacgctcatgaacttggccacgaaagcttctagatgaaaaatagcc 657

                                                                       
Query: 242 ttggacccaagtcgcatcttgtgttcatagtgtgcagcccagtgacaaacttcatgcttc 301
           || || || || ||||||||||||||||| ||||| ||||||||||| |  ||||| |||
Sbjct: 656 tttgatccgaggcgcatcttgtgttcataatgtgcggcccagtgacagatctcatgtttc 597

                                                                       
Query: 302 aaatcagagtctaacttcttcattaactcggttaacaacttcttcaagatgctttcaggt 361
           | ||| |  ||||||||| ||| ||| || |  |||||||||||||| ||  |||| |||
Sbjct: 596 agatccgcatctaacttcctcagtaattctgccaacaacttcttcaaaatagtttcgggt 537

                                                                       
Query: 362 gggatacaattcacaagtaactcgtagaatttctggcgtacagaatatagccttttaggg 421
           ||||||||||| || ||||| || ||||||||||||||||||| | ||||||||||||||
Sbjct: 536 gggatacaattgacgagtaattcatagaatttctggcgtacagcaaatagccttttaggg 477

                                                                       
Query: 422 ctttgttcactcaagatttcagttgctatttcagacacatactgctcccagtcaagagga 481
           ||||||||  | |  || ||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 476 ctttgttctgtaagtatatcagttgctatttcagacacatattgctcccagtcaagagga 417

                                                                
Query: 482 ggcgccacttgatttgctgaaaatggatattgctggactttgcatgtctcaaa 534
           |||||||||||||||| || |||||||||||| || |||||||| ||||||||
Sbjct: 416 ggcgccacttgatttgatgtaaatggatattgttgcactttgcaagtctcaaa 364
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>gb|BT017250.1| Zea mays clone EL01N0307D02.c mRNA sequence
          Length = 1558

 Score =  333 bits (168), Expect = 4e-88
 Identities = 291/332 (87%)
 Strand = Plus / Minus

                                                                        
Query: 182  aggaactccttgtaaatgctcatgaacttggccacgaaagcttccagatgaaaaatggcc 241
            |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |||
Sbjct: 1226 aggaactccttgtaaacgctcatgaacttggccacgaaagcttctagatgaaaaatagcc 1167

                                                                        
Query: 242  ttggacccaagtcgcatcttgtgttcatagtgtgcagcccagtgacaaacttcatgcttc 301
            || || || || ||||||||||||||||| ||||| ||||||||||| |  ||||| |||
Sbjct: 1166 tttgatccgaggcgcatcttgtgttcataatgtgcggcccagtgacagatctcatgtttc 1107

                                                                        
Query: 302  aaatcagagtctaacttcttcattaactcggttaacaacttcttcaagatgctttcaggt 361
            | ||| |  ||||||||| ||| ||| || |  |||||||||||||| || ||||| |||
Sbjct: 1106 agatccgcatctaacttcctcagtaattctgccaacaacttcttcaaaatactttcgggt 1047

                                                                        
Query: 362  gggatacaattcacaagtaactcgtagaatttctggcgtacagaatatagccttttaggg 421
            ||||||||||| || ||||| || ||||||||||||||||||| | ||||||||||||||
Sbjct: 1046 gggatacaattgacgagtaattcatagaatttctggcgtacagcaaatagccttttaggg 987

                                                                        
Query: 422  ctttgttcactcaagatttcagttgctatttcagacacatactgctcccagtcaagagga 481
            ||||||||  | |  || ||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 986  ctttgttctgtaagtatatcagttgctatttcagacacatattgctcccagtcaagagga 927

                                            
Query: 482  ggcgccacttgatttgctgaaaatggatattg 513
            |||||||||||||||| || ||||||||||||
Sbjct: 926  ggcgccacttgatttgatgtaaatggatattg 895
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>gb|AC090871.11| Oryza sativa chromosome 3 BAC OSJNBb0060J21 genomic sequence, complete
             sequence
          Length = 162497

 Score =  103 bits (52), Expect = 6e-19
 Identities = 85/96 (88%)
 Strand = Plus / Minus

                                                                         
Query: 412   ccttttagggctttgttcactcaagatttcagttgctatttcagacacatactgctccca 471
             ||||||||||||||||||  ||| ||| |||| ||||||||| |||||||| ||||||||
Sbjct: 82130 ccttttagggctttgttctttcatgatatcagctgctatttctgacacatattgctccca 82071

                                                 
Query: 472   gtcaagaggaggcgccacttgatttgctgaaaatgg 507
             |||||||||||| || |||||||||| || ||||||
Sbjct: 82070 gtcaagaggaggtgctacttgatttgatgtaaatgg 82035



 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 63/68 (92%)
 Strand = Plus / Minus

                                                                         
Query: 347   aagatgctttcaggtgggatacaattcacaagtaactcgtagaatttctggcgtacagaa 406
             ||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||| |
Sbjct: 82368 aagatgctttcaggtgggatacaattcacaagtaattcgtagaacttctggcgcacagca 82309

                     
Query: 407   tatagcct 414
              |||||||
Sbjct: 82308 aatagcct 82301



 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 70/78 (89%)
 Strand = Plus / Minus

                                                                         
Query: 267   catagtgtgcagcccagtgacaaacttcatgcttcaaatcagagtctaacttcttcatta 326
             |||||||||||||||||||||||| |||||| ||||| ||||||||||| ||||||| ||
Sbjct: 82532 catagtgtgcagcccagtgacaaatttcatgtttcaagtcagagtctaatttcttcagta 82473

                               
Query: 327   actcggttaacaacttct 344
             |||| |  ||||||||||
Sbjct: 82472 actccgccaacaacttct 82455



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 37/38 (97%)
 Strand = Plus / Minus

                                                   
Query: 230   tgaaaaatggccttggacccaagtcgcatcttgtgttc 267
             ||||||||||||||||||||||| ||||||||||||||
Sbjct: 82809 tgaaaaatggccttggacccaagacgcatcttgtgttc 82772



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 66/78 (84%)
 Strand = Plus / Minus

                                                                         
Query: 512   tgctggactttgcatgtctcaaagaataatattgctcgcctcaagttgcggnttgattga 571
             |||||||||||||| |||||||| || | ||| ||||| |||| ||| ||| | ||||| 
Sbjct: 81912 tgctggactttgcaggtctcaaaaaacagtatcgctcgtctcaggttacggttcgattgt 81853

                               
Query: 572   gctgctatccgagcagca 589
             |||||||||| |||||||
Sbjct: 81852 gctgctatcctagcagca 81835



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                                 
Query: 188   tccttgtaaatgctcatgaacttggccacgaaagct 223
             |||||||| ||||||||||||||||| |||||||||
Sbjct: 82961 tccttgtagatgctcatgaacttggcgacgaaagct 82926
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  103 bits (52), Expect = 6e-19
 Identities = 85/96 (88%)
 Strand = Plus / Plus

                                                                            
Query: 412      ccttttagggctttgttcactcaagatttcagttgctatttcagacacatactgctccca 471
                ||||||||||||||||||  ||| ||| |||| ||||||||| |||||||| ||||||||
Sbjct: 32661777 ccttttagggctttgttctttcatgatatcagctgctatttctgacacatattgctccca 32661836

                                                    
Query: 472      gtcaagaggaggcgccacttgatttgctgaaaatgg 507
                |||||||||||| || |||||||||| || ||||||
Sbjct: 32661837 gtcaagaggaggtgctacttgatttgatgtaaatgg 32661872



 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 63/68 (92%)
 Strand = Plus / Plus

                                                                            
Query: 347      aagatgctttcaggtgggatacaattcacaagtaactcgtagaatttctggcgtacagaa 406
                ||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||| |
Sbjct: 32661539 aagatgctttcaggtgggatacaattcacaagtaattcgtagaacttctggcgcacagca 32661598

                        
Query: 407      tatagcct 414
                 |||||||
Sbjct: 32661599 aatagcct 32661606



 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 70/78 (89%)
 Strand = Plus / Plus

                                                                            
Query: 267      catagtgtgcagcccagtgacaaacttcatgcttcaaatcagagtctaacttcttcatta 326
                |||||||||||||||||||||||| |||||| ||||| ||||||||||| ||||||| ||
Sbjct: 32661375 catagtgtgcagcccagtgacaaatttcatgtttcaagtcagagtctaatttcttcagta 32661434

                                  
Query: 327      actcggttaacaacttct 344
                |||| |  ||||||||||
Sbjct: 32661435 actccgccaacaacttct 32661452



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 37/38 (97%)
 Strand = Plus / Plus

                                                      
Query: 230      tgaaaaatggccttggacccaagtcgcatcttgtgttc 267
                ||||||||||||||||||||||| ||||||||||||||
Sbjct: 32661098 tgaaaaatggccttggacccaagacgcatcttgtgttc 32661135



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 66/78 (84%)
 Strand = Plus / Plus

                                                                            
Query: 512      tgctggactttgcatgtctcaaagaataatattgctcgcctcaagttgcggnttgattga 571
                |||||||||||||| |||||||| || | ||| ||||| |||| ||| ||| | ||||| 
Sbjct: 32661995 tgctggactttgcaggtctcaaaaaacagtatcgctcgtctcaggttacggttcgattgt 32662054

                                  
Query: 572      gctgctatccgagcagca 589
                |||||||||| |||||||
Sbjct: 32662055 gctgctatcctagcagca 32662072



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                                    
Query: 188      tccttgtaaatgctcatgaacttggccacgaaagct 223
                |||||||| ||||||||||||||||| |||||||||
Sbjct: 32660946 tccttgtagatgctcatgaacttggcgacgaaagct 32660981
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  103 bits (52), Expect = 6e-19
 Identities = 85/96 (88%)
 Strand = Plus / Plus

                                                                            
Query: 412      ccttttagggctttgttcactcaagatttcagttgctatttcagacacatactgctccca 471
                ||||||||||||||||||  ||| ||| |||| ||||||||| |||||||| ||||||||
Sbjct: 32752287 ccttttagggctttgttctttcatgatatcagctgctatttctgacacatattgctccca 32752346

                                                    
Query: 472      gtcaagaggaggcgccacttgatttgctgaaaatgg 507
                |||||||||||| || |||||||||| || ||||||
Sbjct: 32752347 gtcaagaggaggtgctacttgatttgatgtaaatgg 32752382



 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 63/68 (92%)
 Strand = Plus / Plus

                                                                            
Query: 347      aagatgctttcaggtgggatacaattcacaagtaactcgtagaatttctggcgtacagaa 406
                ||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||| |
Sbjct: 32752049 aagatgctttcaggtgggatacaattcacaagtaattcgtagaacttctggcgcacagca 32752108

                        
Query: 407      tatagcct 414
                 |||||||
Sbjct: 32752109 aatagcct 32752116



 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 70/78 (89%)
 Strand = Plus / Plus

                                                                            
Query: 267      catagtgtgcagcccagtgacaaacttcatgcttcaaatcagagtctaacttcttcatta 326
                |||||||||||||||||||||||| |||||| ||||| ||||||||||| ||||||| ||
Sbjct: 32751885 catagtgtgcagcccagtgacaaatttcatgtttcaagtcagagtctaatttcttcagta 32751944

                                  
Query: 327      actcggttaacaacttct 344
                |||| |  ||||||||||
Sbjct: 32751945 actccgccaacaacttct 32751962



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 37/38 (97%)
 Strand = Plus / Plus

                                                      
Query: 230      tgaaaaatggccttggacccaagtcgcatcttgtgttc 267
                ||||||||||||||||||||||| ||||||||||||||
Sbjct: 32751608 tgaaaaatggccttggacccaagacgcatcttgtgttc 32751645



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 66/78 (84%)
 Strand = Plus / Plus

                                                                            
Query: 512      tgctggactttgcatgtctcaaagaataatattgctcgcctcaagttgcggnttgattga 571
                |||||||||||||| |||||||| || | ||| ||||| |||| ||| ||| | ||||| 
Sbjct: 32752505 tgctggactttgcaggtctcaaaaaacagtatcgctcgtctcaggttacggttcgattgt 32752564

                                  
Query: 572      gctgctatccgagcagca 589
                |||||||||| |||||||
Sbjct: 32752565 gctgctatcctagcagca 32752582



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                                    
Query: 188      tccttgtaaatgctcatgaacttggccacgaaagct 223
                |||||||| ||||||||||||||||| |||||||||
Sbjct: 32751456 tccttgtagatgctcatgaacttggcgacgaaagct 32751491
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>gb|AC159612.1| Zea mays chromosome 5S clone ZMMBBb0511I12 map bin: 5.00, complete
             sequence
          Length = 50000

 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 84/96 (87%)
 Strand = Plus / Minus

                                                                         
Query: 412   ccttttagggctttgttcactcaagatttcagttgctatttcagacacatactgctccca 471
             ||||||||||||||||||  |||  || || || |||||||||||||| || ||||||||
Sbjct: 40057 ccttttagggctttgttctgtcagtatatccgtggctatttcagacacgtattgctccca 39998

                                                 
Query: 472   gtcaagaggaggcgccacttgatttgctgaaaatgg 507
              ||||||||||||||||||||||||| || ||||||
Sbjct: 39997 atcaagaggaggcgccacttgatttgatgtaaatgg 39962



 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 63/69 (91%)
 Strand = Plus / Minus

                                                                         
Query: 155   ggttttcctcaaccaaatgcagcacaaaggaactccttgtaaatgctcatgaacttggcc 214
             |||||| |||||||||||| |||    |||||||||||||||||||||||||||||||||
Sbjct: 41551 ggttttgctcaaccaaatgtagccaccaggaactccttgtaaatgctcatgaacttggcc 41492

                      
Query: 215   acgaaagct 223
             |||||||||
Sbjct: 41491 acgaaagct 41483



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 54/61 (88%)
 Strand = Plus / Minus

                                                                         
Query: 343   cttcaagatgctttcaggtgggatacaattcacaagtaactcgtagaatttctggcgtac 402
             |||||| || ||||| |||||||||||||| || ||||| || |||||||||||||||||
Sbjct: 40909 cttcaaaatactttcgggtgggatacaattgacgagtaattcatagaatttctggcgtac 40850

              
Query: 403   a 403
             |
Sbjct: 40849 a 40849



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                        
Query: 222   cttccagatgaaaaatggccttggacccaagtcgcatcttgtg 264
             |||||||||||||||| ||||| || ||||| |||||||||||
Sbjct: 41288 cttccagatgaaaaatagcctttgatccaaggcgcatcttgtg 41246
to top
>gb|AY559232.1| Zea mays isolate mon00212 Ac insertion site
          Length = 661

 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 63/69 (91%)
 Strand = Plus / Plus

                                                                       
Query: 155 ggttttcctcaaccaaatgcagcacaaaggaactccttgtaaatgctcatgaacttggcc 214
           |||||| |||||||||||| |||    |||||||||||||||||||||||||||||||||
Sbjct: 166 ggttttgctcaaccaaatgtagccaccaggaactccttgtaaatgctcatgaacttggcc 225

                    
Query: 215 acgaaagct 223
           |||||||||
Sbjct: 226 acgaaagct 234



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 39/43 (90%)
 Strand = Plus / Plus

                                                      
Query: 222 cttccagatgaaaaatggccttggacccaagtcgcatcttgtg 264
           |||||||||||||||| ||||| || ||||| |||||||||||
Sbjct: 429 cttccagatgaaaaatagcctttgatccaaggcgcatcttgtg 471
to top
>ref|XM_796686.1| PREDICTED: Strongylocentrotus purpuratus similar to Activator 1 38
            kDa subunit (Replication factor C 38 kDa subunit) (A1 38
            kDa subunit) (RF-C 38 kDa subunit) (RFC38) (Replication
            factor C subunit 3), transcript variant 2 (LOC576419),
            mRNA
          Length = 1378

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 56/64 (87%)
 Strand = Plus / Minus

                                                                        
Query: 181  aaggaactccttgtaaatgctcatgaacttggccacgaaagcttccagatgaaaaatggc 240
            |||||||  |||||| |||||||| |||||||| ||||| |||||||||||| | |||||
Sbjct: 1083 aaggaacctcttgtagatgctcataaacttggcaacgaatgcttccagatgatagatggc 1024

                
Query: 241  cttg 244
            ||||
Sbjct: 1023 cttg 1020
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>ref|XM_774819.1| PREDICTED: Strongylocentrotus purpuratus similar to Activator 1 38
            kDa subunit (Replication factor C 38 kDa subunit) (A1 38
            kDa subunit) (RF-C 38 kDa subunit) (RFC38) (Replication
            factor C subunit 3), transcript variant 1 (LOC576419),
            mRNA
          Length = 1394

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 56/64 (87%)
 Strand = Plus / Minus

                                                                        
Query: 181  aaggaactccttgtaaatgctcatgaacttggccacgaaagcttccagatgaaaaatggc 240
            |||||||  |||||| |||||||| |||||||| ||||| |||||||||||| | |||||
Sbjct: 1099 aaggaacctcttgtagatgctcataaacttggcaacgaatgcttccagatgatagatggc 1040

                
Query: 241  cttg 244
            ||||
Sbjct: 1039 cttg 1036
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>gb|BT014244.1| Lycopersicon esculentum clone 133445R, mRNA sequence
          Length = 1328

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 78/95 (82%)
 Strand = Plus / Minus

                                                                        
Query: 190  cttgtaaatgctcatgaacttggccacgaaagcttccagatgaaaaatggccttggaccc 249
            |||||| ||||||||||| |||||||| || ||||| |||||||| || |||||    ||
Sbjct: 1119 cttgtagatgctcatgaatttggccacaaatgcttcgagatgaaatatagccttctgtcc 1060

                                               
Query: 250  aagtcgcatcttgtgttcatagtgtgcagcccagt 284
            ||| |||||| | || ||||| || ||||||||||
Sbjct: 1059 aagacgcatcctatgctcataatgagcagcccagt 1025
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>ref|NM_122656.3| Arabidopsis thaliana DNA binding / nucleoside-triphosphatase/
           nucleotide binding AT5G27740 mRNA, complete cds
          Length = 1351

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 44/51 (86%)
 Strand = Plus / Minus

                                                              
Query: 414 ttttagggctttgttcactcaagatttcagttgctatttcagacacatact 464
           ||||||||||||||||  |||  || ||||||||||||||||  |||||||
Sbjct: 905 ttttagggctttgttctttcatcatgtcagttgctatttcagcaacatact 855
to top
>gb|AY091236.1| Arabidopsis thaliana putative replication factor C (At5g27740)
           mRNA, complete cds
          Length = 1096

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 44/51 (86%)
 Strand = Plus / Minus

                                                              
Query: 414 ttttagggctttgttcactcaagatttcagttgctatttcagacacatact 464
           ||||||||||||||||  |||  || ||||||||||||||||  |||||||
Sbjct: 814 ttttagggctttgttctttcatcatgtcagttgctatttcagcaacatact 764
to top
>gb|AY074381.1| Arabidopsis thaliana putative replication factor C (At5g27740)
           mRNA, complete cds
          Length = 1356

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 44/51 (86%)
 Strand = Plus / Minus

                                                              
Query: 414 ttttagggctttgttcactcaagatttcagttgctatttcagacacatact 464
           ||||||||||||||||  |||  || ||||||||||||||||  |||||||
Sbjct: 905 ttttagggctttgttctttcatcatgtcagttgctatttcagcaacatact 855
to top
>emb|BX832152.1|CNS0A1N0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTPGH55ZC02 of Hormone Treated Callus of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1328

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 191  ttgtaaatgctcatgaacttggccacgaaagcttc 225
            ||||| |||||||||||||||||||| || |||||
Sbjct: 1114 ttgtatatgctcatgaacttggccacaaatgcttc 1080
to top
>emb|BX831280.1|CNS09YRN Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS74ZF05 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1338

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 44/51 (86%)
 Strand = Plus / Minus

                                                              
Query: 414 ttttagggctttgttcactcaagatttcagttgctatttcagacacatact 464
           ||||||||||||||||  |||  || ||||||||||||||||  |||||||
Sbjct: 901 ttttagggctttgttctttcatcatgtcagttgctatttcagcaacatact 851
to top
>gb|AC069556.4|AC069556 Genomic Sequence For Arabidopsis thaliana Clone T1G16 From Chromosome
             V, complete sequence
          Length = 93672

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 44/51 (86%)
 Strand = Plus / Minus

                                                                
Query: 414   ttttagggctttgttcactcaagatttcagttgctatttcagacacatact 464
             ||||||||||||||||  |||  || ||||||||||||||||  |||||||
Sbjct: 46457 ttttagggctttgttctttcatcatgtcagttgctatttcagcaacatact 46407
to top
>ref|XM_778423.1| PREDICTED: Strongylocentrotus purpuratus hypothetical protein
            LOC578239 (LOC578239), mRNA
          Length = 2328

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 285  gacaaacttcatgcttcaaatc 306
            ||||||||||||||||||||||
Sbjct: 2218 gacaaacttcatgcttcaaatc 2197
to top
>ref|XM_722985.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY07252)
           partial mRNA
          Length = 963

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 424 ttgttcactcaagatttcagttgct 448
           |||||||||||| ||||||||||||
Sbjct: 765 ttgttcactcaatatttcagttgct 741
to top
>emb|AL365334.13| Mouse DNA sequence from clone RP23-392F1 on chromosome 1, complete
             sequence
          Length = 173053

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 249   caagtcgcatcttgtgttcat 269
             |||||||||||||||||||||
Sbjct: 45291 caagtcgcatcttgtgttcat 45311
to top
>gb|AC155164.5| Mus musculus BAC clone RP24-74L7 from chromosome 8, complete sequence
          Length = 193057

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 495    ttgctgaaaatggatattgctggacttt 522
              ||||||||||||||||||| || |||||
Sbjct: 123865 ttgctgaaaatggatattggtgtacttt 123838
to top
>ref|NG_005114.1| Homo sapiens coagulation factor VIII region (F8@) on chromosome X
          Length = 652898

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 174    cagcacaaaggaactccttg 193
              ||||||||||||||||||||
Sbjct: 287608 cagcacaaaggaactccttg 287589
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>emb|Z74029.1|CEC45B11 Caenorhabditis elegans Cosmid C45B11, complete sequence
          Length = 15489

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 435  agatttcagttgctatttca 454
            ||||||||||||||||||||
Sbjct: 8705 agatttcagttgctatttca 8686
to top
>emb|AL731576.9| Human DNA sequence from clone RP11-178G16 on chromosome 10 Contains the
             3' end of the VCL gene for vinculin, a novel gene, the
             AP3M1 gene for adaptor-related protein complex 3 mu 1
             subunit, the 5' end of the ADK gene for adenosine kinase
             and two CpG islands, complete sequence
          Length = 104656

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 66    aacacccacacatcagacca 85
             ||||||||||||||||||||
Sbjct: 33987 aacacccacacatcagacca 33968
to top
>emb|BX293995.4| Human DNA sequence from clone RP11-143H17 on chromosome X Contains the
             3' end of a novel gene (C6.1A) and a phosphatidylinositol
             binding clathrin assembly protein (PICALM) pseudogene,
             complete sequence
          Length = 74649

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 174   cagcacaaaggaactccttg 193
             ||||||||||||||||||||
Sbjct: 66917 cagcacaaaggaactccttg 66936
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>emb|CR859371.1| Pongo pygmaeus mRNA; cDNA DKFZp459H1729 (from clone DKFZp459H1729)
          Length = 2652

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 174  cagcacaaaggaactccttg 193
            ||||||||||||||||||||
Sbjct: 2461 cagcacaaaggaactccttg 2442
to top
>emb|CR615605.1| full-length cDNA clone CS0DK011YL11 of HeLa cells Cot 25-normalized
            of Homo sapiens (human)
          Length = 2694

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 174  cagcacaaaggaactccttg 193
            ||||||||||||||||||||
Sbjct: 2559 cagcacaaaggaactccttg 2540
to top
>dbj|AK055524.1| Homo sapiens cDNA FLJ30962 fis, clone HCASM2000560
          Length = 2643

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 66   aacacccacacatcagacca 85
            ||||||||||||||||||||
Sbjct: 1163 aacacccacacatcagacca 1182
to top
>emb|CR593339.1| full-length cDNA clone CS0DK005YF08 of HeLa cells Cot 25-normalized
            of Homo sapiens (human)
          Length = 1894

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 174  cagcacaaaggaactccttg 193
            ||||||||||||||||||||
Sbjct: 1477 cagcacaaaggaactccttg 1458
to top
>emb|CR406153.1| Gallus gallus finished cDNA, clone ChEST851b23
          Length = 983

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 126 tcttgcagcagcaaacatcc 145
           ||||||||||||||||||||
Sbjct: 662 tcttgcagcagcaaacatcc 643
to top
>ref|NM_073410.2| Caenorhabditis elegans C45B11.2 (C45B11.2) mRNA, complete cds
          Length = 2073

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 435  agatttcagttgctatttca 454
            ||||||||||||||||||||
Sbjct: 1768 agatttcagttgctatttca 1749
to top
>gb|AC139493.3| Homo sapiens chromosome 5 clone RP11-844P9, complete sequence
          Length = 173607

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 174    cagcacaaaggaactccttg 193
              ||||||||||||||||||||
Sbjct: 158388 cagcacaaaggaactccttg 158369
to top
>gb|AC138956.3| Homo sapiens chromosome 5 clone RP11-843P14, complete sequence
          Length = 175357

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 174    cagcacaaaggaactccttg 193
              ||||||||||||||||||||
Sbjct: 114527 cagcacaaaggaactccttg 114546
to top
>emb|BX950459.1| Gallus gallus finished cDNA, clone ChEST911a20
          Length = 1851

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 126  tcttgcagcagcaaacatcc 145
            ||||||||||||||||||||
Sbjct: 1531 tcttgcagcagcaaacatcc 1512
to top
>gb|AC005036.1| Homo sapiens BAC clone RP11-364H22 from 2, complete sequence
          Length = 199684

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 54    atacagaatgtaaacacccacaca 77
             ||||||||||||||||| ||||||
Sbjct: 77860 atacagaatgtaaacacacacaca 77883
to top
>emb|AL953899.7| Zebrafish DNA sequence from clone CH211-233N24, complete sequence
          Length = 169796

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 143   tccgtatgctctggttttcc 162
             ||||||||||||||||||||
Sbjct: 78779 tccgtatgctctggttttcc 78798
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>emb|BX005484.7| Zebrafish DNA sequence from clone DKEY-25G12, complete sequence
          Length = 212049

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 143    tccgtatgctctggttttcc 162
              ||||||||||||||||||||
Sbjct: 112912 tccgtatgctctggttttcc 112931
to top
>emb|BX548157.5| Zebrafish DNA sequence from clone CH211-201B11 in linkage group 18,
             complete sequence
          Length = 195621

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 436   gatttcagttgctatttcag 455
             ||||||||||||||||||||
Sbjct: 10813 gatttcagttgctatttcag 10794
to top
>gb|AC159217.3| Pan troglodytes BAC clone CH251-347C9 from chromosome unknown, complete
              sequence
          Length = 173847

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 174    cagcacaaaggaactccttg 193
              ||||||||||||||||||||
Sbjct: 105696 cagcacaaaggaactccttg 105677
to top
>emb|CT573417.1| Pan troglodytes chromosome X clone PTB-001B13 map Xq28, complete
             sequence
          Length = 117521

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 174   cagcacaaaggaactccttg 193
             ||||||||||||||||||||
Sbjct: 24076 cagcacaaaggaactccttg 24057
to top
>gb|BC002999.1| Homo sapiens BRCA1/BRCA2-containing complex, subunit 3, transcript
            variant 1, mRNA (cDNA clone MGC:3961 IMAGE:2821917),
            complete cds
          Length = 2846

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 174  cagcacaaaggaactccttg 193
            ||||||||||||||||||||
Sbjct: 2650 cagcacaaaggaactccttg 2631
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>gb|BC006540.2| Homo sapiens BRCA1/BRCA2-containing complex, subunit 3, transcript
            variant 1, mRNA (cDNA clone MGC:2329 IMAGE:2821917),
            complete cds
          Length = 2846

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 174  cagcacaaaggaactccttg 193
            ||||||||||||||||||||
Sbjct: 2650 cagcacaaaggaactccttg 2631
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>emb|AL928673.4| Mouse DNA sequence from clone RP23-139B13 on chromosome 4, complete
             sequence
          Length = 71090

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 339   acttcttcaagatgctttca 358
             ||||||||||||||||||||
Sbjct: 65763 acttcttcaagatgctttca 65744
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>emb|AL135745.5|CNS01DVD Human chromosome 14 DNA sequence BAC C-2300N4 of library CalTech-D from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 118332

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 55    tacagaatgtaaacacccac 74
             ||||||||||||||||||||
Sbjct: 52560 tacagaatgtaaacacccac 52541
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>ref|NM_001018055.1| Homo sapiens chromosome X open reading frame 53 (CXorf53), transcript
            variant 2, mRNA
          Length = 2839

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 174  cagcacaaaggaactccttg 193
            ||||||||||||||||||||
Sbjct: 2666 cagcacaaaggaactccttg 2647
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>ref|NM_024332.2| Homo sapiens chromosome X open reading frame 53 (CXorf53), transcript
            variant 1, mRNA
          Length = 2937

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 174  cagcacaaaggaactccttg 193
            ||||||||||||||||||||
Sbjct: 2741 cagcacaaaggaactccttg 2722


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,329,856
Number of Sequences: 3902068
Number of extensions: 5329856
Number of successful extensions: 107743
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 107575
Number of HSP's gapped (non-prelim): 163
length of query: 589
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 566
effective length of database: 17,143,297,704
effective search space: 9703106500464
effective search space used: 9703106500464
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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