ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd20b02 |
|---|---|
| Clone Library Name | barley_pub |
>VL96_IRV1 (P22856) L96 protein| Length = 867 Score = 55.1 bits (131), Expect = 2e-07 Identities = 46/172 (26%), Positives = 79/172 (45%), Gaps = 17/172 (9%) Frame = -1 Query: 700 PHVPKINGEIPSLDEATMDHERLSDRLRLYELTENKVKGDGNCQFRALSDQLYQTPD--- 530 P +P+ G A D E L+ R R Y++ VKGDGNC FRA+ L + Sbjct: 583 PELPEYKG-----GNADRDLEILARR-RGYKVIP--VKGDGNCLFRAVGKSLRLNQNIKY 634 Query: 529 HHEFVREQIISQLKSNREAYDGYV----------PMAY----DEYLDKVSRNGEWGDHVT 392 HE +R Q+++ L S++E + Y+ P Y + Y+ +S+ G WGD + Sbjct: 635 SHEDLRAQVVTYLTSHKEFLEPYLEYVTESGDTTPQEYAKNVERYIKNISKPGTWGDFIC 694 Query: 391 LQAAADKYGVKIFVMTSFKDTCYIEIQPKVQKSNKVVLLSFWAEVHYNSIFP 236 L+ ++ VK ++ +T ++ ++ L F + HY ++ P Sbjct: 695 LRVLSEILKVKFNLL--ILNTRNFQVISNNDTFKPLIPLGFIDDYHYTALTP 744
>OTUD3_HUMAN (Q5T2D3) OTU domain-containing protein 3| Length = 398 Score = 43.5 bits (101), Expect = 6e-04 Identities = 30/137 (21%), Positives = 70/137 (51%), Gaps = 2/137 (1%) Frame = -1 Query: 631 SDRLRLYELTENKVKGDGNCQFRALSDQLYQTPDHHEFVREQIISQLKSNREAYDGYV-- 458 +++L+ L +V GDGNC FRAL DQL +H R++ + + RE ++ +V Sbjct: 57 ANQLQALGLKLREVPGDGNCLFRALGDQLEGHSRNHLKHRQETVDYMIKQREDFEPFVED 116 Query: 457 PMAYDEYLDKVSRNGEWGDHVTLQAAADKYGVKIFVMTSFKDTCYIEIQPKVQKSNKVVL 278 + +++++ +++ G + + + A A + + + + + +I+ + S + + Sbjct: 117 DIPFEKHVASLAKPGTFAGNDAIVAFARNHQLNVVIHQ--LNAPLWQIRGTEKSSVRELH 174 Query: 277 LSFWAEVHYNSIFPQND 227 +++ HY+S+ ND Sbjct: 175 IAYRYGEHYDSVRRIND 191
>OTU6B_CHICK (Q5ZIP6) OTU domain-containing protein 6B| Length = 302 Score = 43.1 bits (100), Expect = 8e-04 Identities = 41/172 (23%), Positives = 70/172 (40%), Gaps = 21/172 (12%) Frame = -1 Query: 676 EIPSLDEAT-MDHERLSDRLRLYELTENKVKGDGNCQFRALSDQLYQTPDHHE-----FV 515 EI +L A ++ ++L+ L L ++ DG+C +RA+ DQL DHH + Sbjct: 132 EIENLTGARHLESQKLASLLAARHLEIKQIPSDGHCMYRAIEDQL---KDHHNSWTVATL 188 Query: 514 REQIISQLKS----------NREAYDGYVPMAYDEYLDKVSRNGEWGDHVTLQAAADKYG 365 R Q + S N D Y +++Y D ++ WG + L+A + Sbjct: 189 RNQTAKYIHSHFDDFLPFLTNPNTGDMYSKEEFEKYCDDIANTAAWGGQLELRALSHILQ 248 Query: 364 VKIFVMTSFKDTCYIEIQPKVQKSNKVVLLSFWAEV-----HYNSIFPQNDA 224 I V+ + + + S K ++L + HYNS+ DA Sbjct: 249 TPIEVVQMDSPSIIV----GEEYSGKPIILVYMRHAYGLGEHYNSVKLLTDA 296
>OTU6B_MOUSE (Q8K2H2) OTU domain-containing protein 6B| Length = 294 Score = 42.0 bits (97), Expect = 0.002 Identities = 40/164 (24%), Positives = 71/164 (43%), Gaps = 19/164 (11%) Frame = -1 Query: 676 EIPSLDEAT-MDHERLSDRLRLYELTENKVKGDGNCQFRALSDQL-------------YQ 539 EI +L A ++ E+L+ L EL ++ DG+C + AL DQL Q Sbjct: 124 EIENLSGARHLESEKLAQILAARELEIKQIPSDGHCMYGALEDQLREQDCALTVASLRRQ 183 Query: 538 TPDHHEFVREQIISQLKSNREAYDGYVPMAYDEYLDKVSRNGEWGDHVTLQAAADKYGVK 359 T ++ + + + L +N D Y P + +Y D + WG + L+A + Sbjct: 184 TAEYMQTHSDDFLPFL-TNPSTGDMYTPEEFGKYCDDIVNTAAWGGQLELRALSHILQTP 242 Query: 358 IFVMTSFKDTCYI-EIQPKVQKSNKVVLL----SFWAEVHYNSI 242 I ++ + + E P+ N +VL+ ++ HYNS+ Sbjct: 243 IEILQADAPPIIVGEEYPR----NPLVLVYMRHAYGLGEHYNSV 282
>OTU6B_HUMAN (Q8N6M0) OTU domain-containing protein 6B| Length = 293 Score = 42.0 bits (97), Expect = 0.002 Identities = 37/162 (22%), Positives = 72/162 (44%), Gaps = 17/162 (10%) Frame = -1 Query: 676 EIPSLDEAT-MDHERLSDRLRLYELTENKVKGDGNCQFRALSDQL-------------YQ 539 EI +L A M+ E+L+ L +L ++ DG+C ++A+ DQL Q Sbjct: 123 EIENLTGARHMESEKLAQILAARQLEIKQIPSDGHCMYKAIEDQLKEKDCALTVVALRSQ 182 Query: 538 TPDHHEFVREQIISQLKSNREAYDGYVPMAYDEYLDKVSRNGEWGDHVTLQAAADKYGVK 359 T ++ + E + L +N D Y P + +Y + + WG + L+A + Sbjct: 183 TAEYMQSHVEDFLPFL-TNPNTGDMYTPEEFQKYCEDIVNTAAWGGQLELRALSHILQTP 241 Query: 358 IFVMTSFKDTCYIEIQPKVQKSNKVVLL---SFWAEVHYNSI 242 I ++ + D+ I + + K +++ ++ HYNS+ Sbjct: 242 IEIIQA--DSPPIIVGEEYSKKPLILVYMRHAYGLGEHYNSV 281
>YHB3_YEAST (P38747) Hypothetical 36.1 kDa protein in YLF2-PRPS4 intergenic| region Length = 307 Score = 42.0 bits (97), Expect = 0.002 Identities = 33/159 (20%), Positives = 71/159 (44%), Gaps = 19/159 (11%) Frame = -1 Query: 661 DEATMDHERLSDRLRLYELTENKVKGDGNCQFRALSDQLYQTPDHHEFVREQIISQLK-- 488 D M+ E + L +L + ++ DG+C F ++ DQL D + ++ + +L+ Sbjct: 149 DLKKMEQESIDQLCELKKLKQFDIQPDGHCLFASILDQLKLRHDPKKLDQDMDVMKLRWL 208 Query: 487 ---SNREAYDGYVPMAY----------DEYLDKVSRNGEWGDHVTLQAAADKYGVKIFVM 347 +E D ++P + DEY ++ +WG + + A + + I ++ Sbjct: 209 SCNYVQEHRDDFIPYLFDEETMKMKDIDEYTKEMEHTAQWGGEIEILALSHVFDCPISIL 268 Query: 346 TSFKDTCYIEIQPKVQKSNKVVLL----SFWAEVHYNSI 242 S + I++ + K+ ++ L+ S+ HYNS+ Sbjct: 269 MSGRP---IQVYNECGKNPELKLVYYKHSYALGEHYNSL 304
>OTU6A_HUMAN (Q7L8S5) OTU domain-containing protein 6A| Length = 288 Score = 42.0 bits (97), Expect = 0.002 Identities = 42/152 (27%), Positives = 67/152 (44%), Gaps = 15/152 (9%) Frame = -1 Query: 646 DHERLSDRLRLYELTENKVKGDGNCQFRALSDQLYQTPDHHEFVREQIISQLK------- 488 + E+L+ L L + DG+C +RA+ DQL + E +R + S +K Sbjct: 128 EEEKLAAILGARGLEMKAIPADGHCMYRAIQDQLVFSVS-VEMLRCRTASYMKKHVDEFL 186 Query: 487 ---SNREAYDGYVPMAYDE---YLDKVSRNGEWGDHVTLQAAADKYGVKIFVMTSFKDTC 326 SN E D + YD+ Y D + R WG + L+A + I V+ + T Sbjct: 187 PFFSNPETSDSF---GYDDFMIYCDNIVRTTAWGGQLELRALSHVLKTPIEVIQADSPTL 243 Query: 325 YIEIQPKVQKSNKVVLLSFWAEV--HYNSIFP 236 I + V+K +V L + + HYNS+ P Sbjct: 244 IIG-EEYVKKPIILVYLRYAYSLGEHYNSVTP 274
>OTU6A_MOUSE (Q6IE21) OTU domain-containing protein 6A (Hin-6 protease)| Length = 290 Score = 40.0 bits (92), Expect = 0.007 Identities = 38/151 (25%), Positives = 65/151 (43%), Gaps = 14/151 (9%) Frame = -1 Query: 646 DHERLSDRLRLYELTENKVKGDGNCQFRALSDQL----------YQTPDHHEFVREQIIS 497 + E+++ L L + DG+C +RA+ DQL Y+T ++R+ I Sbjct: 129 EEEKVAAILGAKNLEMKTIPADGHCMYRAIQDQLVFSVTIESLRYRTA---YYMRKHIDD 185 Query: 496 QLK--SNREAYDGYVPMAYDEYLDKVSRNGEWGDHVTLQAAADKYGVKIFVMTSFKDTCY 323 L + EA + Y + Y D + N WG + L+A + I V+ + T Sbjct: 186 FLPFFTEPEAGNFYTREDFLRYCDDIVHNASWGGQLELRALSHVLQTPIEVVQANSPTIV 245 Query: 322 IEIQPKVQKSNKVVLLSFWAEV--HYNSIFP 236 I + +K +V L + + HYNS+ P Sbjct: 246 IG-EEYTRKPVTLVYLHYACDFGEHYNSVKP 275
>OTU6B_BRARE (Q7ZV00) OTU domain-containing protein 6B| Length = 293 Score = 38.5 bits (88), Expect = 0.020 Identities = 35/153 (22%), Positives = 69/153 (45%), Gaps = 16/153 (10%) Frame = -1 Query: 637 RLSDRLRLYELTENKVKGDGNCQFRALSDQLYQ--TPDHHEFVREQIISQLKSNREAY-- 470 +L ++L L ++ DG+C +RA+ QL + + +R+Q ++S+ + + Sbjct: 137 KLREKLVERHLQIKEISSDGHCMYRAVEHQLTERGLALGLKELRDQTAQYMRSHADDFMP 196 Query: 469 --------DGYVPMAYDEYLDKVSRNGEWGDHVTLQAAADKYGVKIFVMTSFKDTCYIEI 314 D Y +++Y V+ WG + L+A + + I V+ + D+ I I Sbjct: 197 FLTNPNTGDMYTAEEFEKYCSDVADTAAWGGQLELKALSQVLQLPIEVIQA--DSPCITI 254 Query: 313 QPKVQKSNKVVLL----SFWAEVHYNSIFPQND 227 + K K+ L+ ++ HYNS+ P D Sbjct: 255 GEEYDKP-KITLIYMRHAYGLGEHYNSVEPLKD 286
>OTU_DROME (P10383) Protein ovarian tumor locus| Length = 853 Score = 38.1 bits (87), Expect = 0.026 Identities = 22/115 (19%), Positives = 53/115 (46%) Frame = -1 Query: 583 DGNCQFRALSDQLYQTPDHHEFVREQIISQLKSNREAYDGYVPMAYDEYLDKVSRNGEWG 404 D + FR +++Q+Y T H +R + + + R ++ +P +D Y+ +S+ +G Sbjct: 37 DASSLFRVIAEQMYDTQMLHYEIRLECVRFMTLKRRIFEKEIPGDFDSYMQDMSKPKTYG 96 Query: 403 DHVTLQAAADKYGVKIFVMTSFKDTCYIEIQPKVQKSNKVVLLSFWAEVHYNSIF 239 L+A + Y + + + + + ++ +V F E H++S++ Sbjct: 97 TMTELRAMSCLYRRNVILYEPYNMGTSVVFNRRYAENFRVF---FNNENHFDSVY 148
>OTU6B_XENLA (Q6GM06) OTU domain-containing protein 6B| Length = 294 Score = 37.7 bits (86), Expect = 0.034 Identities = 39/164 (23%), Positives = 67/164 (40%), Gaps = 19/164 (11%) Frame = -1 Query: 676 EIPSLDEAT-MDHERLSDRLRLYELTENKVKGDGNCQFRALSDQL-------------YQ 539 EI +L A ++ ++L+ L EL ++ DG+C +RA+ QL Q Sbjct: 126 EIANLSGARHLESQKLAQILAERELQIRQIPSDGHCMYRAIEHQLNEQGNSLTVANLRSQ 185 Query: 538 TPDHHEFVREQIISQLKSNREAYDGYVPMAYDEYLDKVSRNGEWGDHVTLQAAADKYGVK 359 T D+ + E + L +N D Y + +Y + WG + L+A + Sbjct: 186 TADYMQKRAEDFLPFL-TNSSTGDMYTQEEFQKYCTDIVNTPAWGGQLELRALSHILKTP 244 Query: 358 IFVMTSFKDTCYIEIQPKVQKSNKVVLLSFWAEV-----HYNSI 242 I V+ + + I + SNK + L + HYNS+ Sbjct: 245 IEVIQAES----LPIVIGEEYSNKPITLVYMRHAYGLGEHYNSV 284
>OTUD4_HUMAN (Q01804) OTU domain-containing protein 4 (HIV-1-induced protein| HIN-1) Length = 145 Score = 37.0 bits (84), Expect = 0.058 Identities = 23/89 (25%), Positives = 44/89 (49%) Frame = -1 Query: 502 ISQLKSNREAYDGYVPMAYDEYLDKVSRNGEWGDHVTLQAAADKYGVKIFVMTSFKDTCY 323 I L+ NRE ++ ++ +++EYL ++ EW V + A + Y K F++ +++ Sbjct: 4 IHYLRENREKFEAFIEGSFEEYLKRLENPQEWVGQVEISALSLMYR-KDFII--YREPNV 60 Query: 322 IEIQPKVQKSNKVVLLSFWAEVHYNSIFP 236 Q + VLL F HY+ ++P Sbjct: 61 SPSQVTENNFPEKVLLCFSNGNHYDIVYP 89
>OTU6B_XENTR (Q5M8L0) OTU domain-containing protein 6B| Length = 294 Score = 34.7 bits (78), Expect = 0.29 Identities = 38/164 (23%), Positives = 66/164 (40%), Gaps = 19/164 (11%) Frame = -1 Query: 676 EIPSLDEAT-MDHERLSDRLRLYELTENKVKGDGNCQFRALSDQL-------------YQ 539 EI +L A ++ ++L+ L EL ++ DG+C +RA+ QL Q Sbjct: 126 EIANLSGARHLESQKLARILAERELQIRQIPSDGHCMYRAIEHQLRERGNDLTVANLRSQ 185 Query: 538 TPDHHEFVREQIISQLKSNREAYDGYVPMAYDEYLDKVSRNGEWGDHVTLQAAADKYGVK 359 T D+ + E + L +N D Y + +Y + WG + L+A + Sbjct: 186 TADYMQNHAEDFLPFL-TNSSTGDMYTQEEFLKYCTDIVNTPAWGGQLELRALSHILKTA 244 Query: 358 IFVMTSFKDTCYIEIQPKVQKSNKVVLLSFWAEV-----HYNSI 242 I V+ + I + S+K + L + HYNS+ Sbjct: 245 IEVIQAESSPIVI----GEEYSSKAITLVYMRHAYGLGEHYNSV 284
>RRPL_DUGBV (Q66431) RNA-directed RNA polymerase (EC 2.7.7.48) (L protein)| Length = 4036 Score = 32.3 bits (72), Expect = 1.4 Identities = 17/65 (26%), Positives = 35/65 (53%), Gaps = 4/65 (6%) Frame = -1 Query: 586 GDGNCQFRALSDQLY--QTPDHHEFVRE--QIISQLKSNREAYDGYVPMAYDEYLDKVSR 419 GDGNC + ++++ + +TP V+E Q+ +++ + E ++ DEY+ + Sbjct: 36 GDGNCFYHSIAELFFDVKTPSSFRKVKEHLQLAAEVYYDTEPEAVGTGISKDEYIKVAMK 95 Query: 418 NGEWG 404 + EWG Sbjct: 96 DNEWG 100
>PTHR1_DIDMA (P25107) Parathyroid hormone/parathyroid hormone-related peptide| receptor precursor (PTH/PTHr receptor) (PTH/PTHrP type I receptor) Length = 585 Score = 31.2 bits (69), Expect = 3.2 Identities = 15/29 (51%), Positives = 17/29 (58%) Frame = +1 Query: 466 HHRLPGYF*AG*LSAPSQTHGGPEFGTAD 552 HH+LPGY G +S S GPE GT D Sbjct: 527 HHQLPGYVKHGSISENSLPSSGPEPGTKD 555
>TP53B_MOUSE (P70399) Tumor suppressor p53-binding protein 1 (p53-binding protein| 1) (p53BP1) (53BP1) Length = 1957 Score = 31.2 bits (69), Expect = 3.2 Identities = 33/123 (26%), Positives = 49/123 (39%), Gaps = 29/123 (23%) Frame = +1 Query: 34 AHRDDPSRDQECTPPGHL---DGETRVLCTPERRQSTRAEAREESLINGGAVRTATISSS 204 +HR++P + + P HL + ++ LC + EA +E V T+ IS Sbjct: 660 SHREEPKEEAMESIPLHLSLTETQSEALCLQK-------EAPKEECPEAMEVETSVISID 712 Query: 205 SPC-------------------ATSERRSVEISSCSEPPPKSSIA--PL-----CWTSEP 306 SP ATSE SV I EP P++ ++ PL C S+ Sbjct: 713 SPQKLQVLDQELEHKDPDTWEEATSEDSSVVIVDVKEPSPRADVSCEPLEEVEKCSDSQS 772 Query: 307 WVG 315 W G Sbjct: 773 WEG 775
>RNC_MYCMO (Q6KHN3) Ribonuclease III (EC 3.1.26.3) (RNase III)| Length = 246 Score = 30.8 bits (68), Expect = 4.1 Identities = 16/59 (27%), Positives = 28/59 (47%) Frame = +3 Query: 270 KLNSTTLLDF*TLGWISM*HVSLNEVMTKIFTPYLSAAACKVTWSPHSPFRETLSKYSS 446 K+N+ F ++ + L E + +IF PY+S + P S F+E + YS+ Sbjct: 117 KINADLFESFVAAIYLDLGDEKLEEFLKEIFYPYISTTNLESIKDPKSSFQEYIQSYSN 175
>RHG09_HUMAN (Q9BRR9) Rho-GTPase-activating protein 9| Length = 750 Score = 30.8 bits (68), Expect = 4.1 Identities = 16/39 (41%), Positives = 26/39 (66%) Frame = -3 Query: 254 LQLDISTERRSEVAHGEEEEMVAVLTAPPLMRLSSLASA 138 L+L +S +E++ GE+EE + L + PL+RLSS S+ Sbjct: 462 LELRLSGSGPAELSAGEDEEEESELVSKPLLRLSSRRSS 500
>GTSE1_MOUSE (Q8R080) G2 and S phase expressed protein 1 (Gtse-1) (B99 protein)| Length = 741 Score = 30.8 bits (68), Expect = 4.1 Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 4/74 (5%) Frame = +1 Query: 67 CTPPGHLDGETRVLCTPERRQSTRAEAREESLINGGAVRTATI----SSSSPCATSERRS 234 C P L E P RR + RAE +ES +G + + SSS P + + + Sbjct: 544 CVPARRLSSE------PRRRSTVRAELTQESSGSGSGGQAQGLSSDESSSPPSSVPQALN 597 Query: 235 VEISSCSEPPPKSS 276 + PPP+ S Sbjct: 598 FSPEKSASPPPQGS 611
>SON_MOUSE (Q9QX47) SON protein| Length = 2404 Score = 30.8 bits (68), Expect = 4.1 Identities = 20/58 (34%), Positives = 26/58 (44%) Frame = +1 Query: 112 TPERRQSTRAEAREESLINGGAVRTATISSSSPCATSERRSVEISSCSEPPPKSSIAP 285 TP RR + +R I+ G R+ +IS S T RRS S S P + S P Sbjct: 1909 TPSRRSRSHTPSRRRRSISVGRRRSFSISPSRRSRTPSRRSRTPSRRSRTPSRRSRTP 1966
>TNAP3_HUMAN (P21580) Tumor necrosis factor, alpha-induced protein 3 (EC| 3.-.-.-) (Putative DNA-binding protein A20) (Zinc finger protein A20) Length = 790 Score = 30.0 bits (66), Expect = 7.1 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 1/58 (1%) Frame = -1 Query: 658 EATMDHERLSDRLR-LYELTENKVKGDGNCQFRALSDQLYQTPDHHEFVREQIISQLK 488 +AT++ ++ + R + +L K GDGNC A S ++ D +R+ + S LK Sbjct: 74 QATLESQKKLNWCREVRKLVALKTNGDGNCLMHATSQYMWGVQDTDLVLRKALFSTLK 131
>RY44_DROME (Q24498) Ryanodine receptor 44F| Length = 5127 Score = 30.0 bits (66), Expect = 7.1 Identities = 15/37 (40%), Positives = 21/37 (56%) Frame = -3 Query: 260 GSLQLDISTERRSEVAHGEEEEMVAVLTAPPLMRLSS 150 G+ LD S ERR+ VAHG + T P +RL++ Sbjct: 1452 GARTLDTSLERRNTVAHGRNVVNQQMTTRAPTLRLNN 1488
>PDE4B_DROME (P12252) cAMP-specific 3',5'-cyclic phosphodiesterase, isoforms| II/III/IV/V/VI/VII (EC 3.1.4.17) (Learning/memory process protein) (Protein dunce) Length = 1070 Score = 30.0 bits (66), Expect = 7.1 Identities = 25/105 (23%), Positives = 43/105 (40%), Gaps = 11/105 (10%) Frame = -3 Query: 311 TQGSEVQQSGAIELLG--------GGSLQLDIST---ERRSEVAHGEEEEMVAVLTAPPL 165 TQ + +G +E G GGS+QL +S ++ S + + E + + ++ Sbjct: 266 TQIDDASVAGVVESAGNLTDSSATGGSMQLSMSKLGLQQSSSILISKSAETIEMKSSSAG 325 Query: 164 MRLSSLASARVL*RRSGVQSTLVSPSRWPGGVHSWSREGSSRCAL 30 MR S L + T++SP P G+H + R L Sbjct: 326 MRTQLTLSGGFLAPPGNRKITILSPIHAPPGLHDMLKRAQGRSPL 370
>PDZK3_RAT (Q9QZR8) PDZ domain-containing protein 3 (PDZ domain-containing| protein 2) (Plakophilin-related armadillo repeat protein-interacting PDZ protein) Length = 2766 Score = 30.0 bits (66), Expect = 7.1 Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 2/93 (2%) Frame = +1 Query: 64 ECTP-PGH-LDGETRVLCTPERRQSTRAEAREESLINGGAVRTATISSSSPCATSERRSV 237 EC P PG DG + LC+P + + ++ E + + ++S TSE S Sbjct: 1159 ECGPHPGTGWDGSSEHLCSPGKSREVHPDSSETPTVAEQVHQPESLSQPVSPRTSEPESQ 1218 Query: 238 EISSCSEPPPKSSIAPLCWTSEPWVGSRCSTYP 336 IS +PP + ++P S P SR P Sbjct: 1219 GISK-MKPPSQRCVSPREKASTPPDSSRAWAAP 1250
>NU4M_LEMCA (Q34878) NADH-ubiquinone oxidoreductase chain 4 (EC 1.6.5.3) (NADH| dehydrogenase subunit 4) Length = 459 Score = 29.6 bits (65), Expect = 9.2 Identities = 11/21 (52%), Positives = 14/21 (66%) Frame = -2 Query: 699 LMSLKLMVKFHHLTKPPWTMK 637 L+ L +M HHL K PWT+K Sbjct: 72 LLPLMIMASQHHLKKEPWTLK 92
>BRAT_DROME (Q8MQJ9) Brain tumor protein| Length = 1037 Score = 29.6 bits (65), Expect = 9.2 Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 1/83 (1%) Frame = +1 Query: 43 DDPSRDQECTPPGHLDGETRVLCTPERRQSTRAEAREE-SLINGGAVRTATISSSSPCAT 219 D P +PP +C+ E + ++R E ++ING +A++SSSS ++ Sbjct: 30 DSPLTLSGSSPPA----SDSAICSDEYTGGSSVKSRSEVTVINGHHPISASVSSSSSASS 85 Query: 220 SERRSVEISSCSEPPPKSSIAPL 288 S S SS S SS + L Sbjct: 86 SSCSSSSSSSSSSSSSSSSTSGL 108
>AG_BRANA (Q01540) Floral homeotic protein AGAMOUS| Length = 252 Score = 29.6 bits (65), Expect = 9.2 Identities = 24/64 (37%), Positives = 30/64 (46%), Gaps = 12/64 (18%) Frame = -1 Query: 631 SDRLRLYELTENKVKGDGNCQFRALSD------------QLYQTPDHHEFVREQIISQLK 488 S R RLYE + N VKG +A+SD Q YQ +R+QIIS Sbjct: 65 SSRGRLYEYSNNSVKGTIERYKKAISDNSNTGSVAEINAQYYQ--QESAKLRQQIISIQN 122 Query: 487 SNRE 476 SNR+ Sbjct: 123 SNRQ 126
>AG_ARATH (P17839) Floral homeotic protein AGAMOUS| Length = 252 Score = 29.6 bits (65), Expect = 9.2 Identities = 24/64 (37%), Positives = 30/64 (46%), Gaps = 12/64 (18%) Frame = -1 Query: 631 SDRLRLYELTENKVKGDGNCQFRALSD------------QLYQTPDHHEFVREQIISQLK 488 S R RLYE + N VKG +A+SD Q YQ +R+QIIS Sbjct: 65 SSRGRLYEYSNNSVKGTIERYKKAISDNSNTGSVAEINAQYYQ--QESAKLRQQIISIQN 122 Query: 487 SNRE 476 SNR+ Sbjct: 123 SNRQ 126
>MCAS_MYCBO (Q02251) Mycocerosic acid synthase (EC 2.3.1.111)| Length = 2111 Score = 29.6 bits (65), Expect = 9.2 Identities = 15/60 (25%), Positives = 27/60 (45%) Frame = -1 Query: 580 GNCQFRALSDQLYQTPDHHEFVREQIISQLKSNREAYDGYVPMAYDEYLDKVSRNGEWGD 401 G F A ++ TP+ + E ++ + AY GY+P+ +L + R WG+ Sbjct: 1945 GRATFLAEGGEIMITPEEGAYAFETLVR----HDRAYSGYIPILGAPWLADLVRRSPWGE 2000
>INSM1_MOUSE (Q63ZV0) Insulinoma-associated protein 1 (Zinc finger protein IA-1)| Length = 521 Score = 29.6 bits (65), Expect = 9.2 Identities = 12/25 (48%), Positives = 15/25 (60%) Frame = +2 Query: 20 PPVRAHTATTPPGTRSAPPRAISME 94 PP+ A PPG R APP A++ E Sbjct: 190 PPLSPAAALRPPGKRPAPPAAVATE 214
>DHX34_HUMAN (Q14147) Probable ATP-dependent RNA helicase DHX34 (EC 3.6.1.-)| (DEAH box protein 34) Length = 576 Score = 29.6 bits (65), Expect = 9.2 Identities = 18/51 (35%), Positives = 21/51 (41%) Frame = +1 Query: 157 SLINGGAVRTATISSSSPCATSERRSVEISSCSEPPPKSSIAPLCWTSEPW 309 SL+ A +S SP S + S E C PP S AP C T W Sbjct: 515 SLVEPVLTIAAALSVQSPFTRSAQSSPE---CCTPPASSLAAPRCCTHRSW 562 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 101,387,377 Number of Sequences: 219361 Number of extensions: 2129300 Number of successful extensions: 7673 Number of sequences better than 10.0: 31 Number of HSP's better than 10.0 without gapping: 7186 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 7649 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 6969622431 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
