Clone Name | rbasd20b02 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_468427.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1799 Score = 591 bits (298), Expect = e-165 Identities = 463/518 (89%) Strand = Plus / Minus Query: 180 gagaacggccaccatctcctcttcttcgccgtgtgcaacctcggagcgtcgttctgtgga 239 |||||||||||||||||||||||| ||| ||| ||| ||||||| || |||||||| ||| Sbjct: 1470 gagaacggccaccatctcctcttcctcgtcgtctgcgacctcggcgcatcgttctgcgga 1411 Query: 240 aatatcgagttgtagtgaacctccgcccaaaagctcaatagcaccactttgttggacttc 299 |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 1410 tatatggagttgtagtgaacctccgcccaaaagctcaacagcaccactttgttggacttc 1351 Query: 300 tgaaccttgggttggatctcgatgtagcacgtatccttgaacgaggtcatgacgaaaatc 359 |||||||| ||||||||||| ||||||||||||||||||||||| ||||| ||||||||| Sbjct: 1350 tgaacctttggttggatctcaatgtagcacgtatccttgaacgatgtcatcacgaaaatc 1291 Query: 360 ttcactccgtacttgtcagcagcagcctgtaaagtcacatggtcaccccattcaccattt 419 || ||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 1290 ttaactccatacttgtcagcagcagcctgtagagtcacatggtcaccccattcaccattt 1231 Query: 420 cgtgagactttgtccaaatactcatcatatgccatggggacatatccatcataggcttcc 479 |||| ||||| ||||| || || |||||||||||||||||||||||||| ||||| || Sbjct: 1230 tgtgatactttctccaagtaatcgtcatatgccatggggacatatccatcgtaggcatca 1171 Query: 480 cggttacttttaagctggctaattatctgctccctcacaaactcatggtggtccggagtt 539 |||||||||||||||||||| || ||||||| |||||||||||||||||| || ||| || Sbjct: 1170 cggttacttttaagctggctcataatctgctgcctcacaaactcatggtgatcgggactt 1111 Query: 540 tggtacagctgatctgatagtgcacggaactgacaattgccatcacccttcaccttgttc 599 || ||||| |||||||||||||| || |||||||| |||||||| || |||||||||| | Sbjct: 1110 tgatacagttgatctgatagtgcccgaaactgacagttgccatctcctttcaccttgtgc 1051 Query: 600 tcagttagttcatacagcctcaacctgtcggacagcctttcatggtccatggtggcttcg 659 ||| ||||||||||| ||||||||| || | ||||||||||||||||||||| ||||| Sbjct: 1050 tcaactagttcatacaacctcaacctttctgtcagcctttcatggtccatggtagcttca 991 Query: 660 tcaagtgatggaatttcaccattaattttagggacatg 697 || | ||| || || || |||||||||||||| ||||| Sbjct: 990 tcgactgaagggatctctccattaattttaggaacatg 953
>ref|XM_507052.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1202_E07.21-2 mRNA Length = 2783 Score = 591 bits (298), Expect = e-165 Identities = 463/518 (89%) Strand = Plus / Minus Query: 180 gagaacggccaccatctcctcttcttcgccgtgtgcaacctcggagcgtcgttctgtgga 239 |||||||||||||||||||||||| ||| ||| ||| ||||||| || |||||||| ||| Sbjct: 1464 gagaacggccaccatctcctcttcctcgtcgtctgcgacctcggcgcatcgttctgcgga 1405 Query: 240 aatatcgagttgtagtgaacctccgcccaaaagctcaatagcaccactttgttggacttc 299 |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 1404 tatatggagttgtagtgaacctccgcccaaaagctcaacagcaccactttgttggacttc 1345 Query: 300 tgaaccttgggttggatctcgatgtagcacgtatccttgaacgaggtcatgacgaaaatc 359 |||||||| ||||||||||| ||||||||||||||||||||||| ||||| ||||||||| Sbjct: 1344 tgaacctttggttggatctcaatgtagcacgtatccttgaacgatgtcatcacgaaaatc 1285 Query: 360 ttcactccgtacttgtcagcagcagcctgtaaagtcacatggtcaccccattcaccattt 419 || ||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 1284 ttaactccatacttgtcagcagcagcctgtagagtcacatggtcaccccattcaccattt 1225 Query: 420 cgtgagactttgtccaaatactcatcatatgccatggggacatatccatcataggcttcc 479 |||| ||||| ||||| || || |||||||||||||||||||||||||| ||||| || Sbjct: 1224 tgtgatactttctccaagtaatcgtcatatgccatggggacatatccatcgtaggcatca 1165 Query: 480 cggttacttttaagctggctaattatctgctccctcacaaactcatggtggtccggagtt 539 |||||||||||||||||||| || ||||||| |||||||||||||||||| || ||| || Sbjct: 1164 cggttacttttaagctggctcataatctgctgcctcacaaactcatggtgatcgggactt 1105 Query: 540 tggtacagctgatctgatagtgcacggaactgacaattgccatcacccttcaccttgttc 599 || ||||| |||||||||||||| || |||||||| |||||||| || |||||||||| | Sbjct: 1104 tgatacagttgatctgatagtgcccgaaactgacagttgccatctcctttcaccttgtgc 1045 Query: 600 tcagttagttcatacagcctcaacctgtcggacagcctttcatggtccatggtggcttcg 659 ||| ||||||||||| ||||||||| || | ||||||||||||||||||||| ||||| Sbjct: 1044 tcaactagttcatacaacctcaacctttctgtcagcctttcatggtccatggtagcttca 985 Query: 660 tcaagtgatggaatttcaccattaattttagggacatg 697 || | ||| || || || |||||||||||||| ||||| Sbjct: 984 tcgactgaagggatctctccattaattttaggaacatg 947
>dbj|AK119352.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-131-F04, full insert sequence Length = 2782 Score = 591 bits (298), Expect = e-165 Identities = 463/518 (89%) Strand = Plus / Minus Query: 180 gagaacggccaccatctcctcttcttcgccgtgtgcaacctcggagcgtcgttctgtgga 239 |||||||||||||||||||||||| ||| ||| ||| ||||||| || |||||||| ||| Sbjct: 1464 gagaacggccaccatctcctcttcctcgtcgtctgcgacctcggcgcatcgttctgcgga 1405 Query: 240 aatatcgagttgtagtgaacctccgcccaaaagctcaatagcaccactttgttggacttc 299 |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 1404 tatatggagttgtagtgaacctccgcccaaaagctcaacagcaccactttgttggacttc 1345 Query: 300 tgaaccttgggttggatctcgatgtagcacgtatccttgaacgaggtcatgacgaaaatc 359 |||||||| ||||||||||| ||||||||||||||||||||||| ||||| ||||||||| Sbjct: 1344 tgaacctttggttggatctcaatgtagcacgtatccttgaacgatgtcatcacgaaaatc 1285 Query: 360 ttcactccgtacttgtcagcagcagcctgtaaagtcacatggtcaccccattcaccattt 419 || ||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 1284 ttaactccatacttgtcagcagcagcctgtagagtcacatggtcaccccattcaccattt 1225 Query: 420 cgtgagactttgtccaaatactcatcatatgccatggggacatatccatcataggcttcc 479 |||| ||||| ||||| || || |||||||||||||||||||||||||| ||||| || Sbjct: 1224 tgtgatactttctccaagtaatcgtcatatgccatggggacatatccatcgtaggcatca 1165 Query: 480 cggttacttttaagctggctaattatctgctccctcacaaactcatggtggtccggagtt 539 |||||||||||||||||||| || ||||||| |||||||||||||||||| || ||| || Sbjct: 1164 cggttacttttaagctggctcataatctgctgcctcacaaactcatggtgatcgggactt 1105 Query: 540 tggtacagctgatctgatagtgcacggaactgacaattgccatcacccttcaccttgttc 599 || ||||| |||||||||||||| || |||||||| |||||||| || |||||||||| | Sbjct: 1104 tgatacagttgatctgatagtgcccgaaactgacagttgccatctcctttcaccttgtgc 1045 Query: 600 tcagttagttcatacagcctcaacctgtcggacagcctttcatggtccatggtggcttcg 659 ||| ||||||||||| ||||||||| || | ||||||||||||||||||||| ||||| Sbjct: 1044 tcaactagttcatacaacctcaacctttctgtcagcctttcatggtccatggtagcttca 985 Query: 660 tcaagtgatggaatttcaccattaattttagggacatg 697 || | ||| || || || |||||||||||||| ||||| Sbjct: 984 tcgactgaagggatctctccattaattttaggaacatg 947
>dbj|AK069427.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023019L08, full insert sequence Length = 1799 Score = 591 bits (298), Expect = e-165 Identities = 463/518 (89%) Strand = Plus / Minus Query: 180 gagaacggccaccatctcctcttcttcgccgtgtgcaacctcggagcgtcgttctgtgga 239 |||||||||||||||||||||||| ||| ||| ||| ||||||| || |||||||| ||| Sbjct: 1470 gagaacggccaccatctcctcttcctcgtcgtctgcgacctcggcgcatcgttctgcgga 1411 Query: 240 aatatcgagttgtagtgaacctccgcccaaaagctcaatagcaccactttgttggacttc 299 |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 1410 tatatggagttgtagtgaacctccgcccaaaagctcaacagcaccactttgttggacttc 1351 Query: 300 tgaaccttgggttggatctcgatgtagcacgtatccttgaacgaggtcatgacgaaaatc 359 |||||||| ||||||||||| ||||||||||||||||||||||| ||||| ||||||||| Sbjct: 1350 tgaacctttggttggatctcaatgtagcacgtatccttgaacgatgtcatcacgaaaatc 1291 Query: 360 ttcactccgtacttgtcagcagcagcctgtaaagtcacatggtcaccccattcaccattt 419 || ||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 1290 ttaactccatacttgtcagcagcagcctgtagagtcacatggtcaccccattcaccattt 1231 Query: 420 cgtgagactttgtccaaatactcatcatatgccatggggacatatccatcataggcttcc 479 |||| ||||| ||||| || || |||||||||||||||||||||||||| ||||| || Sbjct: 1230 tgtgatactttctccaagtaatcgtcatatgccatggggacatatccatcgtaggcatca 1171 Query: 480 cggttacttttaagctggctaattatctgctccctcacaaactcatggtggtccggagtt 539 |||||||||||||||||||| || ||||||| |||||||||||||||||| || ||| || Sbjct: 1170 cggttacttttaagctggctcataatctgctgcctcacaaactcatggtgatcgggactt 1111 Query: 540 tggtacagctgatctgatagtgcacggaactgacaattgccatcacccttcaccttgttc 599 || ||||| |||||||||||||| || |||||||| |||||||| || |||||||||| | Sbjct: 1110 tgatacagttgatctgatagtgcccgaaactgacagttgccatctcctttcaccttgtgc 1051 Query: 600 tcagttagttcatacagcctcaacctgtcggacagcctttcatggtccatggtggcttcg 659 ||| ||||||||||| ||||||||| || | ||||||||||||||||||||| ||||| Sbjct: 1050 tcaactagttcatacaacctcaacctttctgtcagcctttcatggtccatggtagcttca 991 Query: 660 tcaagtgatggaatttcaccattaattttagggacatg 697 || | ||| || || || |||||||||||||| ||||| Sbjct: 990 tcgactgaagggatctctccattaattttaggaacatg 953
>gb|AY106408.1| Zea mays PCO069200 mRNA sequence Length = 1098 Score = 496 bits (250), Expect = e-137 Identities = 460/530 (86%) Strand = Plus / Minus Query: 168 tggtggtgctgtgagaacggccaccatctcctcttcttcgccgtgtgcaacctcggagcg 227 ||||||||||| ||||||||||||||||| ||| |||| | ||| ||| |||||||||| Sbjct: 637 tggtggtgctgcgagaacggccaccatcttctcctcttggtcgtctgcgacctcggagca 578 Query: 228 tcgttctgtggaaatatcgagttgtagtgaacctccgcccaaaagctcaatagcaccact 287 |||||||| ||| ||| ||||||||||| ||||||||||| |||||||| || | |||| Sbjct: 577 tcgttctgcggatgtatggagttgtagtgcacctccgcccagaagctcaacagtatcact 518 Query: 288 ttgttggacttctgaaccttgggttggatctcgatgtagcacgtatccttgaacgaggtc 347 |||||||||||||||||||| || |||||||||||||||| |||||||||||||| ||| Sbjct: 517 ttgttggacttctgaaccttaggcaggatctcgatgtagcaagtatccttgaacgatgtc 458 Query: 348 atgacgaaaatcttcactccgtacttgtcagcagcagcctgtaaagtcacatggtcaccc 407 || ||||| || || ||||| |||||||||||||||||||| | ||||||||||||||| Sbjct: 457 atcacgaagatttttactccatacttgtcagcagcagcctgcagcgtcacatggtcaccc 398 Query: 408 cattcaccatttcgtgagactttgtccaaatactcatcatatgccatggggacatatcca 467 |||| | || |||| ||||| ||||| || ||||||||||||||||| || |||||| Sbjct: 397 cattgcacgttccgtgcaactttctccaagtaatcatcatatgccatgggaacgtatcca 338 Query: 468 tcataggcttcccggttacttttaagctggctaattatctgctccctcacaaactcatgg 527 |||||||| || |||||| ||||||||||| ||||||||||| ||||||||| |||||| Sbjct: 337 tcataggcgtcacggttagttttaagctggttaattatctgcgacctcacaaattcatgg 278 Query: 528 tggtccggagtttggtacagctgatctgatagtgcacggaactgacaattgccatcaccc 587 || |||||| ||||||| ||||||||||||||||| ||||||||||| |||||||| || Sbjct: 277 tgatccggactttggtaaagctgatctgatagtgctcggaactgacagttgccatctcct 218 Query: 588 ttcaccttgttctcagttagttcatacagcctcaacctgtcggacagcctttcatggtcc 647 ||||||||||| ||| || ||||||||||||||||| || | |||||||||||||||| Sbjct: 217 ttcaccttgttttcaaccagctcatacagcctcaacctttctgtcagcctttcatggtcc 158 Query: 648 atggtggcttcgtcaagtgatggaatttcaccattaattttagggacatg 697 || |||||||| |||| |||||| ||||| ||||||||||| |||||||| Sbjct: 157 atagtggcttcatcaattgatgggatttctccattaattttggggacatg 108
>ref|XM_468428.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1884 Score = 293 bits (148), Expect = 4e-76 Identities = 181/192 (94%) Strand = Plus / Minus Query: 229 cgttctgtggaaatatcgagttgtagtgaacctccgcccaaaagctcaatagcaccactt 288 ||||||| ||| |||| |||||||||||||||||||||||||||||||| |||||||||| Sbjct: 1343 cgttctgcggatatatggagttgtagtgaacctccgcccaaaagctcaacagcaccactt 1284 Query: 289 tgttggacttctgaaccttgggttggatctcgatgtagcacgtatccttgaacgaggtca 348 ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||| Sbjct: 1283 tgttggacttctgaacctttggttggatctcaatgtagcacgtatccttgaacgatgtca 1224 Query: 349 tgacgaaaatcttcactccgtacttgtcagcagcagcctgtaaagtcacatggtcacccc 408 | ||||||||||| ||||| |||||||||||||||||||||| ||||||||||||||||| Sbjct: 1223 tcacgaaaatcttaactccatacttgtcagcagcagcctgtagagtcacatggtcacccc 1164 Query: 409 attcaccatttc 420 |||||||||||| Sbjct: 1163 attcaccatttc 1152 Score = 256 bits (129), Expect = 9e-65 Identities = 240/277 (86%) Strand = Plus / Minus Query: 421 gtgagactttgtccaaatactcatcatatgccatggggacatatccatcataggcttccc 480 |||| ||||| ||||| || || |||||||||||||||||||||||||| ||||| || | Sbjct: 1136 gtgatactttctccaagtaatcgtcatatgccatggggacatatccatcgtaggcatcac 1077 Query: 481 ggttacttttaagctggctaattatctgctccctcacaaactcatggtggtccggagttt 540 ||||||||||||||||||| || ||||||| |||||||||||||||||| || ||| ||| Sbjct: 1076 ggttacttttaagctggctcataatctgctgcctcacaaactcatggtgatcgggacttt 1017 Query: 541 ggtacagctgatctgatagtgcacggaactgacaattgccatcacccttcaccttgttct 600 | ||||| |||||||||||||| || |||||||| |||||||| || |||||||||| || Sbjct: 1016 gatacagttgatctgatagtgcccgaaactgacagttgccatctcctttcaccttgtgct 957 Query: 601 cagttagttcatacagcctcaacctgtcggacagcctttcatggtccatggtggcttcgt 660 || ||||||||||| ||||||||| || | ||||||||||||||||||||| ||||| | Sbjct: 956 caactagttcatacaacctcaacctttctgtcagcctttcatggtccatggtagcttcat 897 Query: 661 caagtgatggaatttcaccattaattttagggacatg 697 | | ||| || || || |||||||||||||| ||||| Sbjct: 896 cgactgaagggatctctccattaattttaggaacatg 860 Score = 56.0 bits (28), Expect = 2e-04 Identities = 40/44 (90%) Strand = Plus / Minus Query: 180 gagaacggccaccatctcctcttcttcgccgtgtgcaacctcgg 223 |||||||||||||||||||||||| ||| ||| ||| ||||||| Sbjct: 1454 gagaacggccaccatctcctcttcctcgtcgtctgcgacctcgg 1411
>dbj|AK105997.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-205-H07, full insert sequence Length = 1884 Score = 293 bits (148), Expect = 4e-76 Identities = 181/192 (94%) Strand = Plus / Minus Query: 229 cgttctgtggaaatatcgagttgtagtgaacctccgcccaaaagctcaatagcaccactt 288 ||||||| ||| |||| |||||||||||||||||||||||||||||||| |||||||||| Sbjct: 1343 cgttctgcggatatatggagttgtagtgaacctccgcccaaaagctcaacagcaccactt 1284 Query: 289 tgttggacttctgaaccttgggttggatctcgatgtagcacgtatccttgaacgaggtca 348 ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||| Sbjct: 1283 tgttggacttctgaacctttggttggatctcaatgtagcacgtatccttgaacgatgtca 1224 Query: 349 tgacgaaaatcttcactccgtacttgtcagcagcagcctgtaaagtcacatggtcacccc 408 | ||||||||||| ||||| |||||||||||||||||||||| ||||||||||||||||| Sbjct: 1223 tcacgaaaatcttaactccatacttgtcagcagcagcctgtagagtcacatggtcacccc 1164 Query: 409 attcaccatttc 420 |||||||||||| Sbjct: 1163 attcaccatttc 1152 Score = 256 bits (129), Expect = 9e-65 Identities = 240/277 (86%) Strand = Plus / Minus Query: 421 gtgagactttgtccaaatactcatcatatgccatggggacatatccatcataggcttccc 480 |||| ||||| ||||| || || |||||||||||||||||||||||||| ||||| || | Sbjct: 1136 gtgatactttctccaagtaatcgtcatatgccatggggacatatccatcgtaggcatcac 1077 Query: 481 ggttacttttaagctggctaattatctgctccctcacaaactcatggtggtccggagttt 540 ||||||||||||||||||| || ||||||| |||||||||||||||||| || ||| ||| Sbjct: 1076 ggttacttttaagctggctcataatctgctgcctcacaaactcatggtgatcgggacttt 1017 Query: 541 ggtacagctgatctgatagtgcacggaactgacaattgccatcacccttcaccttgttct 600 | ||||| |||||||||||||| || |||||||| |||||||| || |||||||||| || Sbjct: 1016 gatacagttgatctgatagtgcccgaaactgacagttgccatctcctttcaccttgtgct 957 Query: 601 cagttagttcatacagcctcaacctgtcggacagcctttcatggtccatggtggcttcgt 660 || ||||||||||| ||||||||| || | ||||||||||||||||||||| ||||| | Sbjct: 956 caactagttcatacaacctcaacctttctgtcagcctttcatggtccatggtagcttcat 897 Query: 661 caagtgatggaatttcaccattaattttagggacatg 697 | | ||| || || || |||||||||||||| ||||| Sbjct: 896 cgactgaagggatctctccattaattttaggaacatg 860 Score = 56.0 bits (28), Expect = 2e-04 Identities = 40/44 (90%) Strand = Plus / Minus Query: 180 gagaacggccaccatctcctcttcttcgccgtgtgcaacctcgg 223 |||||||||||||||||||||||| ||| ||| ||| ||||||| Sbjct: 1454 gagaacggccaccatctcctcttcctcgtcgtctgcgacctcgg 1411
>dbj|AK058926.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-009-C03, full insert sequence Length = 1080 Score = 291 bits (147), Expect = 2e-75 Identities = 228/255 (89%) Strand = Plus / Minus Query: 371 cttgtcagcagcagcctgtaaagtcacatggtcaccccattcaccatttcgtgagacttt 430 |||||||||||||||||||| |||||||||||||||||||||||||||| |||| ||||| Sbjct: 302 cttgtcagcagcagcctgtagagtcacatggtcaccccattcaccattttgtgatacttt 243 Query: 431 gtccaaatactcatcatatgccatggggacatatccatcataggcttcccggttactttt 490 ||||| || || |||||||||||||||||||||||||| ||||| || ||||||||||| Sbjct: 242 ctccaagtaatcgtcatatgccatggggacatatccatcgtaggcatcacggttactttt 183 Query: 491 aagctggctaattatctgctccctcacaaactcatggtggtccggagtttggtacagctg 550 ||||||||| || ||||||| |||||||||||||||||| || ||| |||| ||||| || Sbjct: 182 aagctggctcataatctgctgcctcacaaactcatggtgatcgggactttgatacagttg 123 Query: 551 atctgatagtgcacggaactgacaattgccatcacccttcaccttgttctcagttagttc 610 |||||||||||| || |||||||| |||||||| || |||||||||| |||| |||||| Sbjct: 122 atctgatagtgcccgaaactgacagttgccatctcctttcaccttgtgctcaactagttc 63 Query: 611 atacagcctcaacct 625 ||||| ||||||||| Sbjct: 62 atacaacctcaacct 48 Score = 198 bits (100), Expect = 2e-47 Identities = 133/144 (92%) Strand = Plus / Minus Query: 229 cgttctgtggaaatatcgagttgtagtgaacctccgcccaaaagctcaatagcaccactt 288 ||||||| ||| |||| |||||||||||||||||||||||||||||||| |||||||||| Sbjct: 563 cgttctgcggatatatggagttgtagtgaacctccgcccaaaagctcaacagcaccactt 504 Query: 289 tgttggacttctgaaccttgggttggatctcgatgtagcacgtatccttgaacgaggtca 348 ||||||||||||||||||| ||||||||| | ||||||||||||||||||||||| |||| Sbjct: 503 tgttggacttctgaacctttggttggatcccaatgtagcacgtatccttgaacgatgtca 444 Query: 349 tgacgaaaatcttcactccgtact 372 | ||||||||||| ||||| |||| Sbjct: 443 tcacgaaaatcttaactccatact 420 Score = 56.0 bits (28), Expect = 2e-04 Identities = 40/44 (90%) Strand = Plus / Minus Query: 180 gagaacggccaccatctcctcttcttcgccgtgtgcaacctcgg 223 |||||||||||||||||||||||| ||| ||| ||| ||||||| Sbjct: 674 gagaacggccaccatctcctcttcctcgtcgtctgcgacctcgg 631
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 125 bits (63), Expect = 2e-25 Identities = 81/87 (93%) Strand = Plus / Plus Query: 286 ctttgttggacttctgaaccttgggttggatctcgatgtagcacgtatccttgaacgagg 345 |||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| | Sbjct: 35198433 ctttgttggacttctgaacctttggttggatctcaatgtagcacgtatccttgaacgatg 35198492 Query: 346 tcatgacgaaaatcttcactccgtact 372 |||| ||||||||||| ||||| |||| Sbjct: 35198493 tcatcacgaaaatcttaactccatact 35198519 Score = 91.7 bits (46), Expect = 3e-15 Identities = 49/50 (98%) Strand = Plus / Plus Query: 371 cttgtcagcagcagcctgtaaagtcacatggtcaccccattcaccatttc 420 |||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 35198637 cttgtcagcagcagcctgtagagtcacatggtcaccccattcaccatttc 35198686 Score = 89.7 bits (45), Expect = 1e-14 Identities = 69/77 (89%) Strand = Plus / Plus Query: 421 gtgagactttgtccaaatactcatcatatgccatggggacatatccatcataggcttccc 480 |||| ||||| ||||| || || |||||||||||||||||||||||||| ||||| || | Sbjct: 35198781 gtgatactttctccaagtaatcgtcatatgccatggggacatatccatcgtaggcatcac 35198840 Query: 481 ggttacttttaagctgg 497 ||||||||||||||||| Sbjct: 35198841 ggttacttttaagctgg 35198857 Score = 85.7 bits (43), Expect = 2e-13 Identities = 55/59 (93%) Strand = Plus / Plus Query: 229 cgttctgtggaaatatcgagttgtagtgaacctccgcccaaaagctcaatagcaccact 287 ||||||| ||| |||| |||||||||||||||||||||||||||||||| ||||||||| Sbjct: 35198276 cgttctgcggatatatggagttgtagtgaacctccgcccaaaagctcaacagcaccact 35198334 Score = 75.8 bits (38), Expect = 2e-10 Identities = 68/78 (87%) Strand = Plus / Plus Query: 494 ctggctaattatctgctccctcacaaactcatggtggtccggagtttggtacagctgatc 553 |||||| || ||||||| |||||||||||||||||| || ||| |||| ||||| ||||| Sbjct: 35198954 ctggctcataatctgctgcctcacaaactcatggtgatcgggactttgatacagttgatc 35199013 Query: 554 tgatagtgcacggaactg 571 ||||||||| || ||||| Sbjct: 35199014 tgatagtgcccgaaactg 35199031 Score = 60.0 bits (30), Expect = 1e-05 Identities = 57/66 (86%) Strand = Plus / Plus Query: 632 cagcctttcatggtccatggtggcttcgtcaagtgatggaatttcaccattaattttagg 691 ||||||||||||||||||||| ||||| || | ||| || || || |||||||||||||| Sbjct: 35199582 cagcctttcatggtccatggtagcttcatcgactgaagggatctctccattaattttagg 35199641 Query: 692 gacatg 697 ||||| Sbjct: 35199642 aacatg 35199647 Score = 58.0 bits (29), Expect = 4e-05 Identities = 50/57 (87%) Strand = Plus / Plus Query: 569 ctgacaattgccatcacccttcaccttgttctcagttagttcatacagcctcaacct 625 |||||| |||||||| || |||||||||| |||| ||||||||||| ||||||||| Sbjct: 35199295 ctgacagttgccatctcctttcaccttgtgctcaactagttcatacaacctcaacct 35199351 Score = 56.0 bits (28), Expect = 2e-04 Identities = 40/44 (90%) Strand = Plus / Plus Query: 180 gagaacggccaccatctcctcttcttcgccgtgtgcaacctcgg 223 |||||||||||||||||||||||| ||| ||| ||| ||||||| Sbjct: 35198070 gagaacggccaccatctcctcttcctcgtcgtctgcgacctcgg 35198113
>dbj|AP004878.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0474F11 Length = 139544 Score = 125 bits (63), Expect = 2e-25 Identities = 81/87 (93%) Strand = Plus / Plus Query: 286 ctttgttggacttctgaaccttgggttggatctcgatgtagcacgtatccttgaacgagg 345 |||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| | Sbjct: 10483 ctttgttggacttctgaacctttggttggatctcaatgtagcacgtatccttgaacgatg 10542 Query: 346 tcatgacgaaaatcttcactccgtact 372 |||| ||||||||||| ||||| |||| Sbjct: 10543 tcatcacgaaaatcttaactccatact 10569 Score = 91.7 bits (46), Expect = 3e-15 Identities = 49/50 (98%) Strand = Plus / Plus Query: 371 cttgtcagcagcagcctgtaaagtcacatggtcaccccattcaccatttc 420 |||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 10687 cttgtcagcagcagcctgtagagtcacatggtcaccccattcaccatttc 10736 Score = 89.7 bits (45), Expect = 1e-14 Identities = 69/77 (89%) Strand = Plus / Plus Query: 421 gtgagactttgtccaaatactcatcatatgccatggggacatatccatcataggcttccc 480 |||| ||||| ||||| || || |||||||||||||||||||||||||| ||||| || | Sbjct: 10831 gtgatactttctccaagtaatcgtcatatgccatggggacatatccatcgtaggcatcac 10890 Query: 481 ggttacttttaagctgg 497 ||||||||||||||||| Sbjct: 10891 ggttacttttaagctgg 10907 Score = 85.7 bits (43), Expect = 2e-13 Identities = 55/59 (93%) Strand = Plus / Plus Query: 229 cgttctgtggaaatatcgagttgtagtgaacctccgcccaaaagctcaatagcaccact 287 ||||||| ||| |||| |||||||||||||||||||||||||||||||| ||||||||| Sbjct: 10326 cgttctgcggatatatggagttgtagtgaacctccgcccaaaagctcaacagcaccact 10384 Score = 75.8 bits (38), Expect = 2e-10 Identities = 68/78 (87%) Strand = Plus / Plus Query: 494 ctggctaattatctgctccctcacaaactcatggtggtccggagtttggtacagctgatc 553 |||||| || ||||||| |||||||||||||||||| || ||| |||| ||||| ||||| Sbjct: 11004 ctggctcataatctgctgcctcacaaactcatggtgatcgggactttgatacagttgatc 11063 Query: 554 tgatagtgcacggaactg 571 ||||||||| || ||||| Sbjct: 11064 tgatagtgcccgaaactg 11081 Score = 60.0 bits (30), Expect = 1e-05 Identities = 57/66 (86%) Strand = Plus / Plus Query: 632 cagcctttcatggtccatggtggcttcgtcaagtgatggaatttcaccattaattttagg 691 ||||||||||||||||||||| ||||| || | ||| || || || |||||||||||||| Sbjct: 11632 cagcctttcatggtccatggtagcttcatcgactgaagggatctctccattaattttagg 11691 Query: 692 gacatg 697 ||||| Sbjct: 11692 aacatg 11697 Score = 58.0 bits (29), Expect = 4e-05 Identities = 50/57 (87%) Strand = Plus / Plus Query: 569 ctgacaattgccatcacccttcaccttgttctcagttagttcatacagcctcaacct 625 |||||| |||||||| || |||||||||| |||| ||||||||||| ||||||||| Sbjct: 11345 ctgacagttgccatctcctttcaccttgtgctcaactagttcatacaacctcaacct 11401 Score = 56.0 bits (28), Expect = 2e-04 Identities = 40/44 (90%) Strand = Plus / Plus Query: 180 gagaacggccaccatctcctcttcttcgccgtgtgcaacctcgg 223 |||||||||||||||||||||||| ||| ||| ||| ||||||| Sbjct: 10120 gagaacggccaccatctcctcttcctcgtcgtctgcgacctcgg 10163
>dbj|AP004048.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1202_E07 Length = 145014 Score = 125 bits (63), Expect = 2e-25 Identities = 81/87 (93%) Strand = Plus / Plus Query: 286 ctttgttggacttctgaaccttgggttggatctcgatgtagcacgtatccttgaacgagg 345 |||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| | Sbjct: 93789 ctttgttggacttctgaacctttggttggatctcaatgtagcacgtatccttgaacgatg 93848 Query: 346 tcatgacgaaaatcttcactccgtact 372 |||| ||||||||||| ||||| |||| Sbjct: 93849 tcatcacgaaaatcttaactccatact 93875 Score = 91.7 bits (46), Expect = 3e-15 Identities = 49/50 (98%) Strand = Plus / Plus Query: 371 cttgtcagcagcagcctgtaaagtcacatggtcaccccattcaccatttc 420 |||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 93993 cttgtcagcagcagcctgtagagtcacatggtcaccccattcaccatttc 94042 Score = 89.7 bits (45), Expect = 1e-14 Identities = 69/77 (89%) Strand = Plus / Plus Query: 421 gtgagactttgtccaaatactcatcatatgccatggggacatatccatcataggcttccc 480 |||| ||||| ||||| || || |||||||||||||||||||||||||| ||||| || | Sbjct: 94137 gtgatactttctccaagtaatcgtcatatgccatggggacatatccatcgtaggcatcac 94196 Query: 481 ggttacttttaagctgg 497 ||||||||||||||||| Sbjct: 94197 ggttacttttaagctgg 94213 Score = 85.7 bits (43), Expect = 2e-13 Identities = 55/59 (93%) Strand = Plus / Plus Query: 229 cgttctgtggaaatatcgagttgtagtgaacctccgcccaaaagctcaatagcaccact 287 ||||||| ||| |||| |||||||||||||||||||||||||||||||| ||||||||| Sbjct: 93632 cgttctgcggatatatggagttgtagtgaacctccgcccaaaagctcaacagcaccact 93690 Score = 75.8 bits (38), Expect = 2e-10 Identities = 68/78 (87%) Strand = Plus / Plus Query: 494 ctggctaattatctgctccctcacaaactcatggtggtccggagtttggtacagctgatc 553 |||||| || ||||||| |||||||||||||||||| || ||| |||| ||||| ||||| Sbjct: 94310 ctggctcataatctgctgcctcacaaactcatggtgatcgggactttgatacagttgatc 94369 Query: 554 tgatagtgcacggaactg 571 ||||||||| || ||||| Sbjct: 94370 tgatagtgcccgaaactg 94387 Score = 60.0 bits (30), Expect = 1e-05 Identities = 57/66 (86%) Strand = Plus / Plus Query: 632 cagcctttcatggtccatggtggcttcgtcaagtgatggaatttcaccattaattttagg 691 ||||||||||||||||||||| ||||| || | ||| || || || |||||||||||||| Sbjct: 94938 cagcctttcatggtccatggtagcttcatcgactgaagggatctctccattaattttagg 94997 Query: 692 gacatg 697 ||||| Sbjct: 94998 aacatg 95003 Score = 58.0 bits (29), Expect = 4e-05 Identities = 50/57 (87%) Strand = Plus / Plus Query: 569 ctgacaattgccatcacccttcaccttgttctcagttagttcatacagcctcaacct 625 |||||| |||||||| || |||||||||| |||| ||||||||||| ||||||||| Sbjct: 94651 ctgacagttgccatctcctttcaccttgtgctcaactagttcatacaacctcaacct 94707 Score = 56.0 bits (28), Expect = 2e-04 Identities = 40/44 (90%) Strand = Plus / Plus Query: 180 gagaacggccaccatctcctcttcttcgccgtgtgcaacctcgg 223 |||||||||||||||||||||||| ||| ||| ||| ||||||| Sbjct: 93426 gagaacggccaccatctcctcttcctcgtcgtctgcgacctcgg 93469
>ref|XM_472373.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 576 Score = 67.9 bits (34), Expect = 4e-08 Identities = 37/38 (97%) Strand = Plus / Minus Query: 546 agctgatctgatagtgcacggaactgacaattgccatc 583 ||||| |||||||||||||||||||||||||||||||| Sbjct: 320 agctggtctgatagtgcacggaactgacaattgccatc 283 Score = 44.1 bits (22), Expect = 0.61 Identities = 37/42 (88%) Strand = Plus / Minus Query: 375 tcagcagcagcctgtaaagtcacatggtcaccccattcacca 416 ||||||||||| || || || |||||||| |||||||||||| Sbjct: 491 tcagcagcagcttgcaatgtgacatggtcgccccattcacca 450
>gb|AY109494.1| Zea mays CL9836_1 mRNA sequence Length = 1122 Score = 56.0 bits (28), Expect = 2e-04 Identities = 43/48 (89%) Strand = Plus / Plus Query: 370 acttgtcagcagcagcctgtaaagtcacatggtcaccccattcaccat 417 ||||||||||||| || |||| || |||||||||||||||||||||| Sbjct: 523 acttgtcagcagctgcttgtagcgtgacatggtcaccccattcaccat 570 Score = 46.1 bits (23), Expect = 0.16 Identities = 32/35 (91%) Strand = Plus / Plus Query: 552 tctgatagtgcacggaactgacaattgccatcacc 586 ||||| |||||||| ||||||||||| |||||||| Sbjct: 705 tctgagagtgcacgaaactgacaatttccatcacc 739
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 52.0 bits (26), Expect = 0.003 Identities = 38/42 (90%) Strand = Plus / Plus Query: 236 tggaaatatcgagttgtagtgaacctccgcccaaaagctcaa 277 |||| |||||||||||||||| ||||| |||||||| ||||| Sbjct: 35982920 tggatatatcgagttgtagtgcacctcagcccaaaaactcaa 35982961
>gb|AC092263.7| Oryza sativa chromosome 3 BAC OSJNBa0033P04 genomic sequence, complete sequence Length = 164179 Score = 52.0 bits (26), Expect = 0.003 Identities = 38/42 (90%) Strand = Plus / Plus Query: 236 tggaaatatcgagttgtagtgaacctccgcccaaaagctcaa 277 |||| |||||||||||||||| ||||| |||||||| ||||| Sbjct: 44431 tggatatatcgagttgtagtgcacctcagcccaaaaactcaa 44472
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 52.0 bits (26), Expect = 0.003 Identities = 38/42 (90%) Strand = Plus / Plus Query: 236 tggaaatatcgagttgtagtgaacctccgcccaaaagctcaa 277 |||| |||||||||||||||| ||||| |||||||| ||||| Sbjct: 36072994 tggatatatcgagttgtagtgcacctcagcccaaaaactcaa 36073035
>dbj|AK071971.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013087H17, full insert sequence Length = 1342 Score = 52.0 bits (26), Expect = 0.003 Identities = 38/42 (90%) Strand = Plus / Minus Query: 236 tggaaatatcgagttgtagtgaacctccgcccaaaagctcaa 277 |||| |||||||||||||||| ||||| |||||||| ||||| Sbjct: 980 tggatatatcgagttgtagtgcacctcagcccaaaaactcaa 939 Score = 42.1 bits (21), Expect = 2.4 Identities = 72/89 (80%) Strand = Plus / Minus Query: 321 atgtagcacgtatccttgaacgaggtcatgacgaaaatcttcactccgtacttgtcagca 380 |||||||| ||||| |||| || |||| || ||||||||| || || ||| ||| ||| Sbjct: 895 atgtagcaagtatctctgaatgatgtcaggatgaaaatctttacaccatacgagtctgca 836 Query: 381 gcagcctgtaaagtcacatggtcacccca 409 |||||||| || || || ||||||||||| Sbjct: 835 gcagcctgcaatgtaacgtggtcacccca 807 Score = 42.1 bits (21), Expect = 2.4 Identities = 56/65 (86%), Gaps = 2/65 (3%) Strand = Plus / Minus Query: 564 cggaactgacaattgccatcacccttc-accttgttctcagttagttcatacagcctcaa 622 |||||||||||||||||||| |||||| |||||| ||||| || ||||||||| ||| Sbjct: 652 cggaactgacaattgccatc-cccttcaaccttgagctcagcaagatcatacagctccaa 594 Query: 623 cctgt 627 ||||| Sbjct: 593 cctgt 589
>dbj|AK062741.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-106-F03, full insert sequence Length = 696 Score = 52.0 bits (26), Expect = 0.003 Identities = 38/42 (90%) Strand = Plus / Minus Query: 236 tggaaatatcgagttgtagtgaacctccgcccaaaagctcaa 277 |||| |||||||||||||||| ||||| |||||||| ||||| Sbjct: 414 tggatatatcgagttgtagtgcacctcagcccaaaaactcaa 373 Score = 42.1 bits (21), Expect = 2.4 Identities = 72/89 (80%) Strand = Plus / Minus Query: 321 atgtagcacgtatccttgaacgaggtcatgacgaaaatcttcactccgtacttgtcagca 380 |||||||| ||||| |||| || |||| || ||||||||| || || ||| ||| ||| Sbjct: 329 atgtagcaagtatctctgaatgatgtcaggatgaaaatctttacaccatacgagtctgca 270 Query: 381 gcagcctgtaaagtcacatggtcacccca 409 |||||||| || || || ||||||||||| Sbjct: 269 gcagcctgcaatgtaacgtggtcacccca 241 Score = 42.1 bits (21), Expect = 2.4 Identities = 56/65 (86%), Gaps = 2/65 (3%) Strand = Plus / Minus Query: 564 cggaactgacaattgccatcacccttc-accttgttctcagttagttcatacagcctcaa 622 |||||||||||||||||||| |||||| |||||| ||||| || ||||||||| ||| Sbjct: 86 cggaactgacaattgccatc-cccttcaaccttgagctcagcaagatcatacagctccaa 28 Query: 623 cctgt 627 ||||| Sbjct: 27 cctgt 23
>gb|DQ430260.1| Sorghum propinquum locus pSB1846 genomic sequence Length = 747 Score = 50.1 bits (25), Expect = 0.010 Identities = 34/37 (91%) Strand = Plus / Minus Query: 241 atatcgagttgtagtgaacctccgcccaaaagctcaa 277 |||||||||||||||| ||||| |||||||| ||||| Sbjct: 270 atatcgagttgtagtgcacctcagcccaaaaactcaa 234
>gb|DQ430259.1| Sorghum bicolor voucher PI585454 locus pSB1846 genomic sequence Length = 747 Score = 50.1 bits (25), Expect = 0.010 Identities = 34/37 (91%) Strand = Plus / Minus Query: 241 atatcgagttgtagtgaacctccgcccaaaagctcaa 277 |||||||||||||||| ||||| |||||||| ||||| Sbjct: 270 atatcgagttgtagtgcacctcagcccaaaaactcaa 234
>gb|DQ430258.1| Sorghum bicolor voucher PI267408 locus pSB1846 genomic sequence Length = 747 Score = 50.1 bits (25), Expect = 0.010 Identities = 34/37 (91%) Strand = Plus / Minus Query: 241 atatcgagttgtagtgaacctccgcccaaaagctcaa 277 |||||||||||||||| ||||| |||||||| ||||| Sbjct: 270 atatcgagttgtagtgcacctcagcccaaaaactcaa 234
>gb|DQ430257.1| Sorghum bicolor voucher PI221607 locus pSB1846 genomic sequence Length = 747 Score = 50.1 bits (25), Expect = 0.010 Identities = 34/37 (91%) Strand = Plus / Minus Query: 241 atatcgagttgtagtgaacctccgcccaaaagctcaa 277 |||||||||||||||| ||||| |||||||| ||||| Sbjct: 270 atatcgagttgtagtgcacctcagcccaaaaactcaa 234
>gb|DQ430256.1| Sorghum bicolor voucher PI152702 locus pSB1846 genomic sequence Length = 747 Score = 50.1 bits (25), Expect = 0.010 Identities = 34/37 (91%) Strand = Plus / Minus Query: 241 atatcgagttgtagtgaacctccgcccaaaagctcaa 277 |||||||||||||||| ||||| |||||||| ||||| Sbjct: 270 atatcgagttgtagtgcacctcagcccaaaaactcaa 234
>gb|DQ430255.1| Sorghum bicolor voucher NSL87902b locus pSB1846 genomic sequence Length = 747 Score = 50.1 bits (25), Expect = 0.010 Identities = 34/37 (91%) Strand = Plus / Minus Query: 241 atatcgagttgtagtgaacctccgcccaaaagctcaa 277 |||||||||||||||| ||||| |||||||| ||||| Sbjct: 270 atatcgagttgtagtgcacctcagcccaaaaactcaa 234
>gb|DQ430254.1| Sorghum bicolor voucher NSL87902a locus pSB1846 genomic sequence Length = 747 Score = 50.1 bits (25), Expect = 0.010 Identities = 34/37 (91%) Strand = Plus / Minus Query: 241 atatcgagttgtagtgaacctccgcccaaaagctcaa 277 |||||||||||||||| ||||| |||||||| ||||| Sbjct: 270 atatcgagttgtagtgcacctcagcccaaaaactcaa 234
>gb|DQ430253.1| Sorghum bicolor voucher NSL87666 locus pSB1846 genomic sequence Length = 747 Score = 50.1 bits (25), Expect = 0.010 Identities = 34/37 (91%) Strand = Plus / Minus Query: 241 atatcgagttgtagtgaacctccgcccaaaagctcaa 277 |||||||||||||||| ||||| |||||||| ||||| Sbjct: 270 atatcgagttgtagtgcacctcagcccaaaaactcaa 234
>gb|DQ430252.1| Sorghum bicolor voucher NSL77217 locus pSB1846 genomic sequence Length = 747 Score = 50.1 bits (25), Expect = 0.010 Identities = 34/37 (91%) Strand = Plus / Minus Query: 241 atatcgagttgtagtgaacctccgcccaaaagctcaa 277 |||||||||||||||| ||||| |||||||| ||||| Sbjct: 270 atatcgagttgtagtgcacctcagcccaaaaactcaa 234
>gb|DQ430251.1| Sorghum bicolor voucher NSL77034 locus pSB1846 genomic sequence Length = 747 Score = 50.1 bits (25), Expect = 0.010 Identities = 34/37 (91%) Strand = Plus / Minus Query: 241 atatcgagttgtagtgaacctccgcccaaaagctcaa 277 |||||||||||||||| ||||| |||||||| ||||| Sbjct: 270 atatcgagttgtagtgcacctcagcccaaaaactcaa 234
>gb|DQ430250.1| Sorghum bicolor voucher NSL56174 locus pSB1846 genomic sequence Length = 747 Score = 50.1 bits (25), Expect = 0.010 Identities = 34/37 (91%) Strand = Plus / Minus Query: 241 atatcgagttgtagtgaacctccgcccaaaagctcaa 277 |||||||||||||||| ||||| |||||||| ||||| Sbjct: 270 atatcgagttgtagtgcacctcagcccaaaaactcaa 234
>gb|DQ430249.1| Sorghum bicolor voucher NSL56003 locus pSB1846 genomic sequence Length = 747 Score = 50.1 bits (25), Expect = 0.010 Identities = 34/37 (91%) Strand = Plus / Minus Query: 241 atatcgagttgtagtgaacctccgcccaaaagctcaa 277 |||||||||||||||| ||||| |||||||| ||||| Sbjct: 270 atatcgagttgtagtgcacctcagcccaaaaactcaa 234
>gb|DQ430248.1| Sorghum bicolor voucher NSL55243 locus pSB1846 genomic sequence Length = 747 Score = 50.1 bits (25), Expect = 0.010 Identities = 34/37 (91%) Strand = Plus / Minus Query: 241 atatcgagttgtagtgaacctccgcccaaaagctcaa 277 |||||||||||||||| ||||| |||||||| ||||| Sbjct: 270 atatcgagttgtagtgcacctcagcccaaaaactcaa 234
>gb|DQ430247.1| Sorghum bicolor voucher NSL51365 locus pSB1846 genomic sequence Length = 747 Score = 50.1 bits (25), Expect = 0.010 Identities = 34/37 (91%) Strand = Plus / Minus Query: 241 atatcgagttgtagtgaacctccgcccaaaagctcaa 277 |||||||||||||||| ||||| |||||||| ||||| Sbjct: 270 atatcgagttgtagtgcacctcagcccaaaaactcaa 234
>gb|DQ430246.1| Sorghum bicolor voucher NSL51030 locus pSB1846 genomic sequence Length = 747 Score = 50.1 bits (25), Expect = 0.010 Identities = 34/37 (91%) Strand = Plus / Minus Query: 241 atatcgagttgtagtgaacctccgcccaaaagctcaa 277 |||||||||||||||| ||||| |||||||| ||||| Sbjct: 270 atatcgagttgtagtgcacctcagcccaaaaactcaa 234
>gb|DQ430245.1| Sorghum bicolor voucher BTx623 locus pSB1846 genomic sequence Length = 747 Score = 50.1 bits (25), Expect = 0.010 Identities = 34/37 (91%) Strand = Plus / Minus Query: 241 atatcgagttgtagtgaacctccgcccaaaagctcaa 277 |||||||||||||||| ||||| |||||||| ||||| Sbjct: 270 atatcgagttgtagtgcacctcagcccaaaaactcaa 234
>gb|AY106393.1| Zea mays PCO117653 mRNA sequence Length = 1006 Score = 48.1 bits (24), Expect = 0.039 Identities = 36/40 (90%) Strand = Plus / Minus Query: 373 tgtcagcagcagcctgtaaagtcacatggtcaccccattc 412 |||| ||||| |||||||| |||||||| ||||||||||| Sbjct: 631 tgtctgcagctgcctgtaaggtcacatgatcaccccattc 592
>emb|AL607005.3|OSJN00124 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0118P14, complete sequence Length = 158312 Score = 44.1 bits (22), Expect = 0.61 Identities = 37/42 (88%) Strand = Plus / Minus Query: 375 tcagcagcagcctgtaaagtcacatggtcaccccattcacca 416 ||||||||||| || || || |||||||| |||||||||||| Sbjct: 7468 tcagcagcagcttgcaatgtgacatggtcgccccattcacca 7427 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 546 agctgatctgatagtgcacggaact 570 ||||| ||||||||||||||||||| Sbjct: 6948 agctggtctgatagtgcacggaact 6924
>emb|AL606610.3|OSJN00045 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0012E08, complete sequence Length = 106975 Score = 44.1 bits (22), Expect = 0.61 Identities = 37/42 (88%) Strand = Plus / Minus Query: 375 tcagcagcagcctgtaaagtcacatggtcaccccattcacca 416 ||||||||||| || || || |||||||| |||||||||||| Sbjct: 99613 tcagcagcagcttgcaatgtgacatggtcgccccattcacca 99572 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 546 agctgatctgatagtgcacggaact 570 ||||| ||||||||||||||||||| Sbjct: 99093 agctggtctgatagtgcacggaact 99069
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 44.1 bits (22), Expect = 0.61 Identities = 37/42 (88%) Strand = Plus / Minus Query: 375 tcagcagcagcctgtaaagtcacatggtcaccccattcacca 416 ||||||||||| || || || |||||||| |||||||||||| Sbjct: 19944805 tcagcagcagcttgcaatgtgacatggtcgccccattcacca 19944764 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 546 agctgatctgatagtgcacggaact 570 ||||| ||||||||||||||||||| Sbjct: 19944285 agctggtctgatagtgcacggaact 19944261 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 7 cttttctttctctcctcccg 26 |||||||||||||||||||| Sbjct: 24201179 cttttctttctctcctcccg 24201160
>dbj|BA000011.4| Thermoplasma volcanium GSS1 DNA, complete genome Length = 1584804 Score = 44.1 bits (22), Expect = 0.61 Identities = 22/22 (100%) Strand = Plus / Plus Query: 2 aacgccttttctttctctcctc 23 |||||||||||||||||||||| Sbjct: 283465 aacgccttttctttctctcctc 283486
>gb|BC083682.1| Rattus norvegicus cDNA clone IMAGE:7135906 Length = 1450 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 661 caagtgatggaatttcaccat 681 ||||||||||||||||||||| Sbjct: 855 caagtgatggaatttcaccat 875
>gb|BC098950.1| Rattus norvegicus cDNA clone IMAGE:7135924 Length = 1441 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 661 caagtgatggaatttcaccat 681 ||||||||||||||||||||| Sbjct: 911 caagtgatggaatttcaccat 931
>dbj|AK073551.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033044I12, full insert sequence Length = 1227 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 564 cggaactgacaattgccatcaccct 588 |||||||||||||| |||||||||| Sbjct: 491 cggaactgacaatttccatcaccct 467
>gb|AY360385.1| Oryza sativa (japonica cultivar-group) chromosome 8 BAC OSJNBa0095C12, complete sequence Length = 146632 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 7 cttttctttctctcctcccg 26 |||||||||||||||||||| Sbjct: 9168 cttttctttctctcctcccg 9187
>gb|AY360386.1| Oryza sativa (japonica cultivar-group) chromosome 8 BAC OSJNBa0017M13, complete sequence Length = 161902 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 7 cttttctttctctcctcccg 26 |||||||||||||||||||| Sbjct: 146014 cttttctttctctcctcccg 146033
>ref|XM_453215.1| Kluyveromyces lactis NRRL Y-1140, KLLA0D03344g predicted mRNA Length = 1713 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 428 tttgtccaaatactcatcat 447 |||||||||||||||||||| Sbjct: 669 tttgtccaaatactcatcat 650
>ref|XM_757080.1| Ustilago maydis 521 hypothetical protein (UM06026.1) partial mRNA Length = 393 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 26 gtcagagcgcacaccgcgac 45 |||||||||||||||||||| Sbjct: 345 gtcagagcgcacaccgcgac 326
>gb|AC114484.2| Homo sapiens chromosome 1 clone RP4-615B18, complete sequence Length = 118763 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 436 aatactcatcatatgccatg 455 |||||||||||||||||||| Sbjct: 96466 aatactcatcatatgccatg 96447
>emb|AL355608.11| Human DNA sequence from clone RP11-567J2 on chromosome 9 Contains part of the ASTN2 gene for astrotactin 2 (KIAA0634) and a novel gene similar to ribosomal protein L10 (RPL10), complete sequence Length = 132590 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 671 aatttcaccattaattttag 690 |||||||||||||||||||| Sbjct: 123410 aatttcaccattaattttag 123429
>emb|AL035106.28|HS998C11 Human DNA sequence from clone RP5-998C11 on chromosome 20q13.13-13.2 Contains part of the gene for P-Rex1 protein (KIAA1415, PREX1), complete sequence Length = 131007 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 6 ccttttctttctctcctccc 25 |||||||||||||||||||| Sbjct: 11359 ccttttctttctctcctccc 11340
>emb|CR382124.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome D of strain NRRL Y-1140 of Kluyveromyces lactis Length = 1715506 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 428 tttgtccaaatactcatcat 447 |||||||||||||||||||| Sbjct: 280320 tttgtccaaatactcatcat 280301
>emb|AL606998.3|OSJN00125 Oryza sativa genomic DNA, chromosome 4, BAC clone: OJ000223_09, complete sequence Length = 120583 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 7 cttttctttctctcctcccg 26 |||||||||||||||||||| Sbjct: 23591 cttttctttctctcctcccg 23572
>emb|AL606623.3|OSJN00053 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0081L15, complete sequence Length = 150864 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 7 cttttctttctctcctcccg 26 |||||||||||||||||||| Sbjct: 90404 cttttctttctctcctcccg 90385
>emb|AL611951.11| Mouse DNA sequence from clone RP23-265O1 on chromosome 13 Contains a novel gene, complete sequence Length = 191715 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 507 tgctccctcacaaactcatg 526 |||||||||||||||||||| Sbjct: 107530 tgctccctcacaaactcatg 107549
>dbj|AK127367.1| Homo sapiens cDNA FLJ45441 fis, clone BRSSN2008464 Length = 2066 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 6 ccttttctttctctcctccc 25 |||||||||||||||||||| Sbjct: 2001 ccttttctttctctcctccc 1982
>gb|AC148340.3| Medicago truncatula chromosome 2 BAC clone mth2-22d10, complete sequence Length = 105618 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 152 aagagagcctcatcaatggtggtg 175 |||||||| ||||||||||||||| Sbjct: 68829 aagagagcatcatcaatggtggtg 68806
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 7 cttttctttctctcctcccg 26 |||||||||||||||||||| Sbjct: 22691413 cttttctttctctcctcccg 22691432 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 7 cttttctttctctcctcccg 26 |||||||||||||||||||| Sbjct: 22679155 cttttctttctctcctcccg 22679174 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 7 cttttctttctctcctcccg 26 |||||||||||||||||||| Sbjct: 22642439 cttttctttctctcctcccg 22642420
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 7 cttttctttctctcctcccg 26 |||||||||||||||||||| Sbjct: 13421541 cttttctttctctcctcccg 13421560
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 7 cttttctttctctcctcccg 26 |||||||||||||||||||| Sbjct: 19977953 cttttctttctctcctcccg 19977972 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 7 cttttctttctctcctcccg 26 |||||||||||||||||||| Sbjct: 19967986 cttttctttctctcctcccg 19968005
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 7 cttttctttctctcctcccg 26 |||||||||||||||||||| Sbjct: 13022352 cttttctttctctcctcccg 13022333 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 7 cttttctttctctcctcccg 26 |||||||||||||||||||| Sbjct: 13012319 cttttctttctctcctcccg 13012300
>dbj|AP006450.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:B1130E07 Length = 152245 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 7 cttttctttctctcctcccg 26 |||||||||||||||||||| Sbjct: 147008 cttttctttctctcctcccg 147027 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 7 cttttctttctctcctcccg 26 |||||||||||||||||||| Sbjct: 110291 cttttctttctctcctcccg 110272 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 7 cttttctttctctcctcccg 26 |||||||||||||||||||| Sbjct: 96617 cttttctttctctcctcccg 96598 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 7 cttttctttctctcctcccg 26 |||||||||||||||||||| Sbjct: 84357 cttttctttctctcctcccg 84338
>dbj|AP004320.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OJ1008_F01 Length = 128472 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 7 cttttctttctctcctcccg 26 |||||||||||||||||||| Sbjct: 61320 cttttctttctctcctcccg 61301 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 7 cttttctttctctcctcccg 26 |||||||||||||||||||| Sbjct: 51287 cttttctttctctcctcccg 51268
>dbj|AP005103.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0036M16 Length = 158880 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 7 cttttctttctctcctcccg 26 |||||||||||||||||||| Sbjct: 142603 cttttctttctctcctcccg 142622 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 7 cttttctttctctcctcccg 26 |||||||||||||||||||| Sbjct: 132636 cttttctttctctcctcccg 132655
>dbj|AP005832.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:B1136D08 Length = 176635 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 7 cttttctttctctcctcccg 26 |||||||||||||||||||| Sbjct: 173010 cttttctttctctcctcccg 173029
>dbj|AP004228.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1120_B07 Length = 118763 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 7 cttttctttctctcctcccg 26 |||||||||||||||||||| Sbjct: 58268 cttttctttctctcctcccg 58287
>dbj|AP003850.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1793_E11 Length = 101342 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 7 cttttctttctctcctcccg 26 |||||||||||||||||||| Sbjct: 11513 cttttctttctctcctcccg 11532 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 7 cttttctttctctcctcccg 26 |||||||||||||||||||| Sbjct: 1546 cttttctttctctcctcccg 1565
>emb|CR848279.2| Xenopus tropicalis finished cDNA, clone TNeu062n02 Length = 1274 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 504 atctgctccctcacaaactc 523 |||||||||||||||||||| Sbjct: 84 atctgctccctcacaaactc 65
>gb|AY677184.1| Ustilago maydis strain 521 HMG-box transcription factor Rop1-1 (rop1) gene and HMG-box transcription factor Rop1-2 (rop1), complete cds Length = 4700 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 26 gtcagagcgcacaccgcgac 45 |||||||||||||||||||| Sbjct: 4099 gtcagagcgcacaccgcgac 4118
>gb|AC011332.8| Homo sapiens chromosome 5 clone CTC-222D7, complete sequence Length = 144820 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 387 tgtaaagtcacatggtcaccccat 410 ||||||||||||||||||| |||| Sbjct: 86882 tgtaaagtcacatggtcacaccat 86859 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,636,985 Number of Sequences: 3902068 Number of extensions: 5636985 Number of successful extensions: 102772 Number of sequences better than 10.0: 68 Number of HSP's better than 10.0 without gapping: 69 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 102382 Number of HSP's gapped (non-prelim): 389 length of query: 700 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 677 effective length of database: 17,143,297,704 effective search space: 11606012545608 effective search space used: 11606012545608 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)