>ADA29_HUMAN (Q9UKF5) ADAM 29 precursor (A disintegrin and metalloproteinase|
           domain 29)
          Length = 820

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 19/68 (27%), Positives = 28/68 (41%)
 Frame = +3

Query: 63  LFQPFCC*FRSCGKARN*PAVQAPQRPWRSIPRLVEVQPEESPQEAWQTAAPSSQTCPVS 242
           LF   CC +R C K++     Q  Q P       ++ +P E P ++     PS    PV+
Sbjct: 687 LFILLCCLYRLCKKSKPIKKQQDVQTPSAKEEEKIQRRPHELPPQSQPWVMPSQSQPPVT 746

Query: 243 GKSQLPAV 266
                P V
Sbjct: 747 PSQSHPQV 754

>LYXK_PASMU (P57928) Probable L-xylulose kinase (EC 2.7.1.53) (L-xylulokinase)|
          Length = 483

 Score = 27.7 bits (60), Expect(2) = 1.5
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +1

Query: 214 HHLLKLVQCQARANFLQSLGAHYRQGVLLEQRRSFTGFVLERAEISTT 357
           HHL ++ +   +AN L+  G   +  + L+    FTG  LE  +I  T
Sbjct: 380 HHLERMRKRFPQANLLRVTGGPTKSPIWLQMLADFTGMRLEIPQIEET 427



 Score = 22.7 bits (47), Expect(2) = 1.5
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +3

Query: 369 FRSGTFPHLLKEPLYFRTF*ARYCSYNQ 452
           F++ +  H+   P YF  + A+Y  Y Q
Sbjct: 447 FQAQSMLHVEPNPAYFAAYQAKYQRYQQ 474

>RDRP_TNVD (P27209) RNA-directed RNA polymerase (EC 2.7.7.48) [Contains: 22|
           kDa protein]
          Length = 724

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
 Frame = +1

Query: 181 RKVLRRHGKRPHHLLKLVQCQARANFL----QSLGAHYRQGVLLEQRRSFTGFVLERAEI 348
           R+ + +HG RP H+  +V     A F+      L A  RQG  + +RR+  G   E+  +
Sbjct: 146 REEMVKHGVRPSHIAHMVPLAVAACFIPLDSDFLAASIRQGEGMRERRALLGPSWEKGGL 205

Query: 349 STTT 360
             T+
Sbjct: 206 LVTS 209

>YNG2_CANAL (Q5AHB8) Chromatin modification-related protein YNG2 (ING1 homolog|
           2)
          Length = 298

 Score = 30.4 bits (67), Expect = 4.1
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +1

Query: 73  HFAVNSALVERPETSQPFKHPSALGEVSQD 162
           HF  + A +ER E   P +HP  L EVS+D
Sbjct: 103 HFETDIAKLERDELLPPLEHPIELTEVSKD 132

>SPL14_ARATH (Q8RY95) Squamosa promoter-binding-like protein 14 (SPL1-related|
           protein 2)
          Length = 1035

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 21/77 (27%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
 Frame = -2

Query: 519 SLHGEDSLVCQSTLDRLHRTRELDYMSNIVLRMFENTEVPLEDEERFRIEMT--FSRGAD 346
           S+ GE S     +  +   +R  D  S++ L++F ++    EDE R  +  +  +   A 
Sbjct: 360 SVGGERSSSSNQSPSQDSDSRGQDTRSSLSLQLFTSSP---EDESRPTVASSRKYYSSAS 416

Query: 345 LSPLEDKTSETSPLLQE 295
            +P+ED++  +SP++QE
Sbjct: 417 SNPVEDRSPSSSPVMQE 433

>GP1BB_MOUSE (P56400) Platelet glycoprotein Ib beta chain precursor (GP-Ib beta)|
           (GPIbB) (GPIb-beta) (CD42c antigen)
          Length = 206

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 9/71 (12%)
 Frame = +3

Query: 117 PAVQAPQ---RPWRSIPRLVEVQ------PEESPQEAWQTAAPSSQTCPVSGKSQLPAVS 269
           PA++A      PWR   RL+ ++      PE +P    +  AP     P      LP V+
Sbjct: 79  PALRAAHLGANPWRCDCRLLPLRAWLAGRPERAPYRDLRCVAP-----PALRGRLLPYVA 133

Query: 270 RGPLSAGCAPG 302
              L A CAPG
Sbjct: 134 EDELRAACAPG 144

>LCMT2_ASPFU (Q4WVD1) Leucine carboxyl methyltransferase 2 (EC 2.1.1.-)|
          Length = 1047

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 19/73 (26%), Positives = 31/73 (42%)
 Frame = +1

Query: 175 SRRKVLRRHGKRPHHLLKLVQCQARANFLQSLGAHYRQGVLLEQRRSFTGFVLERAEIST 354
           S+R V   +  +PH     V+   R + L + G   R   + E  R F     ++ +   
Sbjct: 33  SKRSVELLYYPKPHFFRYFVKRPPRRSPLINRGYWLRMHAMAESVRQFMKQPSDKPKFVL 92

Query: 355 TTECHFDPEPFLI 393
              C FDP PF++
Sbjct: 93  NLGCGFDPLPFIL 105

>SPL16_ARATH (Q700C2) Squamosa promoter-binding-like protein 16 (SPL1-related|
           protein 3)
          Length = 988

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 19/66 (28%), Positives = 38/66 (57%), Gaps = 6/66 (9%)
 Frame = -2

Query: 462 TRELDYMSNIVLRMFENTEVPLEDEERFRIEMT--FSRGADLSPLEDKTSETSPLLQE-- 295
           +R  D  S++ L++F ++    E+E R ++  +  +   A  +P+ED++  +SP++QE  
Sbjct: 341 SRGQDTRSSLSLQLFTSSP---EEESRPKVASSTKYYSSASSNPVEDRSPSSSPVMQELF 397

Query: 294 --HTLP 283
             HT P
Sbjct: 398 PLHTSP 403

>SIM2_MOUSE (Q61079) Single-minded homolog 2 (SIM transcription factor) (mSIM)|
          Length = 657

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 32/95 (33%), Positives = 40/95 (42%), Gaps = 12/95 (12%)
 Frame = +3

Query: 87  FRSCGKARN*PAV---QAPQRPWRSIPRLVEVQPEESPQEAWQTAAPSSQTCPVSGKSQL 257
           F SCG  R  PA+   +AP++  R   RL   +   +P E     AP  Q       +QL
Sbjct: 544 FPSCGHYREEPALGPAKAPRQASRDAARLALAR---APPECCAPPAPEPQ-----APAQL 595

Query: 258 PAV---------SRGPLSAGCAPGATEKFHWFCPR 335
           P V          RGPL +  APGA E      PR
Sbjct: 596 PFVLLNYHRVLARRGPLGS-AAPGAPEAAGSLRPR 629

>IF2_GEOMG (Q39VA6) Translation initiation factor IF-2|
          Length = 884

 Score = 29.3 bits (64), Expect = 9.1
 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
 Frame = +3

Query: 117 PAVQAPQ--RPWRSIPRLVEVQPEESPQEAWQTAAPSSQTCPVSGKSQLPAVSR 272
           PAV+ P+   P   +P++      ES  E  +  AP +Q  PV+ + + P ++R
Sbjct: 119 PAVEEPKGVEPKIGVPKVETPVASESKAEEPRVTAPPAQPKPVAAEEEKPTMNR 172

>PDE4C_HUMAN (Q08493) cAMP-specific 3',5'-cyclic phosphodiesterase 4C (EC|
           3.1.4.17) (DPDE1) (PDE21)
          Length = 712

 Score = 29.3 bits (64), Expect = 9.1
 Identities = 21/79 (26%), Positives = 34/79 (43%)
 Frame = -2

Query: 531 TWNESLHGEDSLVCQSTLDRLHRTRELDYMSNIVLRMFENTEVPLEDEERFRIEMTFSRG 352
           TW + +H +     Q  LD L   RE  Y S I     + T    +  +RF+ E+T    
Sbjct: 611 TWADLVHPD----AQDLLDTLEDNREW-YQSKIPRSPSDLTNPERDGPDRFQFELTLEEA 665

Query: 351 ADLSPLEDKTSETSPLLQE 295
            +    E++  E + L +E
Sbjct: 666 EEEDEEEEEEGEETALAKE 684

>DCYD_SHIFL (P59330) D-cysteine desulfhydrase (EC 4.4.1.15)|
          Length = 327

 Score = 29.3 bits (64), Expect = 9.1
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = -3

Query: 599 PHKALFHIGIPYTLIDECPSVLQLGMSLYME-RIALSAKVL-WTDYIEPG 456
           P   L  + +  ++ D+ P V+ L  ++  E  +  SA++L W DY  PG
Sbjct: 210 PESELIGVTVSRSVADQLPKVVNLQQAIAKELELTASAEILLWDDYFAPG 259

>DCYD_ECOLI (P76316) D-cysteine desulfhydrase (EC 4.4.1.15)|
          Length = 327

 Score = 29.3 bits (64), Expect = 9.1
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = -3

Query: 599 PHKALFHIGIPYTLIDECPSVLQLGMSLYME-RIALSAKVL-WTDYIEPG 456
           P   L  + +  ++ D+ P V+ L  ++  E  +  SA++L W DY  PG
Sbjct: 210 PESELIGVTVSRSVADQLPKVVNLQQAIAKELELTASAEILLWDDYFAPG 259

>DCYD_ECOL6 (P59329) D-cysteine desulfhydrase (EC 4.4.1.15)|
          Length = 327

 Score = 29.3 bits (64), Expect = 9.1
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = -3

Query: 599 PHKALFHIGIPYTLIDECPSVLQLGMSLYME-RIALSAKVL-WTDYIEPG 456
           P   L  + +  ++ D+ P V+ L  ++  E  +  SA++L W DY  PG
Sbjct: 210 PESELIGVTVSRSVADQLPKVVNLQQAIAKELELTASAEILLWDDYFAPG 259

>TRUB_THETN (Q8RA40) tRNA pseudouridine synthase B (EC 5.4.99.-) (tRNA|
           pseudouridine 55 synthase) (Psi55 synthase)
           (tRNA-uridine isomerase) (tRNA pseudouridylate synthase)
          Length = 285

 Score = 29.3 bits (64), Expect = 9.1
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = -2

Query: 411 TEVPLEDEERFRIEMTFSRGADLSPLEDKTSETSPLLQEHTLPIMGPERLQEV 253
           T   +E ++R+R E+TF    D      K  E+ P      +P+   E+LQEV
Sbjct: 58  TSYLMEHDKRYRFEITFGFSTDTLDKSGKIVESGP------VPLFTLEKLQEV 104

>SOX6_HUMAN (P35712) Transcription factor SOX-6|
          Length = 828

 Score = 29.3 bits (64), Expect = 9.1
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
 Frame = +3

Query: 126 QAPQRPWRSIPRLVEVQPEESPQEAWQTAAPSSQTCPVS--GKSQLPAVSRGPLSAG 290
           +A  +P     R    +P +SP    Q   P+S+T PV+   KS +P+   G L  G
Sbjct: 419 EAAAQPLNLSSRPKTAEPVKSPTSPTQNLFPASKTSPVNLPNKSSIPSPIGGSLGRG 475

>RIR2_PLAF4 (P50650) Ribonucleoside-diphosphate reductase small chain (EC|
           1.17.4.1) (Ribonucleotide reductase small subunit)
           (Ribonucleotide reductase R2 subunit)
          Length = 349

 Score = 29.3 bits (64), Expect = 9.1
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +1

Query: 199 HGKRPHHLLKLVQCQARANFLQSLGAHYRQGVLLEQRR 312
           H K P + + L+  Q + NF +   A Y++  ++ QR+
Sbjct: 302 HSKNPFNWMDLISLQGKTNFFEKRVADYQKSGVMAQRK 339

>RIR2_PLAFG (P50649) Ribonucleoside-diphosphate reductase small chain (EC|
           1.17.4.1) (Ribonucleotide reductase small subunit)
           (Ribonucleotide reductase R2 subunit)
          Length = 322

 Score = 29.3 bits (64), Expect = 9.1
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +1

Query: 199 HGKRPHHLLKLVQCQARANFLQSLGAHYRQGVLLEQRR 312
           H K P + + L+  Q + NF +   A Y++  ++ QR+
Sbjct: 275 HSKNPFNWMDLISLQGKTNFFEKRVADYQKSGVMAQRK 312


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,036,171
Number of Sequences: 219361
Number of extensions: 1852479
Number of successful extensions: 5460
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 5256
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5452
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5253413348
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)