ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd20b01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK064988.1| Oryza sativa (japonica cultivar-group) cDNA clon... 478 e-131
2dbj|AK060749.1| Oryza sativa (japonica cultivar-group) cDNA clon... 470 e-129
3gb|AC097277.6| Oryza sativa chromosome 3 BAC OSJNBa0022C08 genom... 182 9e-43
4gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 182 9e-43
5dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 182 9e-43
6ref|NM_191480.1| Oryza sativa (japonica cultivar-group), predic... 44 0.52
7ref|NM_191478.1| Oryza sativa (japonica cultivar-group), predic... 44 0.52
8emb|BX000359.7| Mouse DNA sequence from clone RP23-343C18 on chr... 44 0.52
9gb|AC110794.3| Homo sapiens BAC clone RP11-598O12 from 4, comple... 44 0.52
10gb|AC129593.4| Mus musculus BAC clone RP24-142E6 from chromosome... 42 2.1
11gb|AC099589.12| Mus musculus chromosome 1, clone RP23-337A19, co... 42 2.1
12gb|AC104100.6| Mus musculus BAC clone RP24-374D12 from chromosom... 42 2.1
13gb|AE016819.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10... 42 2.1
14ref|NM_210994.1| Eremothecium gossypii AFR093Wp (AFR093W), mRNA 42 2.1
15emb|BX537323.9| Zebrafish DNA sequence from clone DKEYP-122E2 in... 42 2.1
16gb|AC133651.4| Mus musculus BAC clone RP24-239C15 from 1, comple... 42 2.1
17gb|AC161878.3| Mus musculus BAC clone RP23-303B4 from chromosome... 42 2.1
18gb|AC151524.2| Medicago truncatula chromosome 7 BAC clone mth2-6... 40 8.2
19gb|AC170260.2| Mus musculus BAC clone RP24-347N1 from chromosome... 40 8.2
20gb|AC114629.12| Mus musculus chromosome 1, clone RP24-111F20, co... 40 8.2
21gb|AY369378.1| Feline immunodeficiency virus isolate CaONC01 gag... 40 8.2
22gb|AF077542.1| Caenorhabditis elegans cosmid Y57G7A, complete se... 40 8.2
23emb|Z74473.1|CEF56H9 Caenorhabditis elegans Cosmid F56H9, comple... 40 8.2
24gb|AC123054.2| Mus musculus BAC clone RP24-220N11 from 5, comple... 40 8.2
25gb|AC112491.4| Homo sapiens 3 BAC RP11-3P17 (Roswell Park Cancer... 40 8.2
26emb|BX927150.1| Corynebacterium glutamicum ATCC 13032, IS finger... 40 8.2
27gb|AC087302.7| Homo sapiens chromosome 17, clone RP11-761L11, co... 40 8.2
28gb|AC104639.3| Homo sapiens 3q BAC RP11-672L16 (Roswell Park Can... 40 8.2
29gb|AC098680.3| Homo sapiens BAC clone RP11-600L4 from 4, complet... 40 8.2
30gb|AC026473.7| Homo sapiens chromosome 16 clone RP11-51O6, compl... 40 8.2
31ref|NM_073761.3| Caenorhabditis elegans abnormal cell LINeage fa... 40 8.2
32gb|AC009169.9| Homo sapiens chromosome 16 clone RP11-90K18, comp... 40 8.2
33dbj|BA000036.3| Corynebacterium glutamicum ATCC 13032 DNA, compl... 40 8.2
34emb|BX927258.8| Zebrafish DNA sequence from clone CH211-279M15 i... 40 8.2
35emb|CR361565.8| Zebrafish DNA sequence from clone CH211-242L1 in... 40 8.2
36gb|AC006120.1|AC006120 Homo sapiens chromosome 17, clone hRPK.34... 40 8.2
37emb|AL935060.17| Mouse DNA sequence from clone RP24-151H6 on chr... 40 8.2
38gb|U20168.1|CEU20168 Caenorhabditis elegans Lin-25 protein (lin-... 40 8.2 
>dbj|AK064988.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001D07, full
            insert sequence
          Length = 3566

 Score =  478 bits (241), Expect = e-131
 Identities = 383/429 (89%), Gaps = 1/429 (0%)
 Strand = Plus / Minus

                                                                        
Query: 173  gcagccggaggaaagtcctcaggaggcatggcaaacggccgcaccatcttctcaaacttg 232
            ||||| ||||| ||||| ||||||||||| ||||| || |||||||| ||||||||||||
Sbjct: 3326 gcagctggagggaagtcttcaggaggcatcgcaaatggtcgcaccattttctcaaacttg 3267

                                                                        
Query: 233  tccagtgtcaggcaagagccaacttcctgcagtctctcggggcccattatcggcagggtg 292
            |||||||| ||||| || |||||||||||||||||||| || ||||||||||||||||||
Sbjct: 3266 tccagtgttaggcaggaaccaacttcctgcagtctctcaggccccattatcggcagggtg 3207

                                                                        
Query: 293  tgctcctggagcaacggagaagtttcactggttttgtcctcgagagggctgagatcagca 352
            |||||||||||||| | || | ||||||||||||| ||||| ||||| || |||||||||
Sbjct: 3206 tgctcctggagcaaggaagtattttcactggttttatcctctagaggactaagatcagca 3147

                                                                        
Query: 353  ccacgactgaatgtcatttcgatccggaacctttcctcatcttctaaaggaacctctgta 412
            |||||||| ||||||||||| ||||||||||||| ||||||||||||||||||||| |||
Sbjct: 3146 ccacgactaaatgtcatttcaatccggaaccttttctcatcttctaaaggaacctcagta 3087

                                                                        
Query: 413  ttttcgaacattctaagcacgatattgctcatataatcaagctccctggttctatgtagt 472
            ||||| |||||||||||||| ||||| ||||| || |||||||||||||||||||| |||
Sbjct: 3086 ttttcaaacattctaagcacaatattactcatgtagtcaagctccctggttctatgcagt 3027

                                                                        
Query: 473  cggtccagagtactttggcagacaaggctatcctctccatgtagagactcattccaagtt 532
            ||||| | ||  ||||||||||||||||||||||| || |||||| | ||| ||||||||
Sbjct: 3026 cggtctaaagcgctttggcagacaaggctatcctccccttgtagacattca-tccaagtt 2968

                                                                        
Query: 533  gcaataccgaaggacattcatcaatgagtgtatatgggattccgatgtgaaataaagcct 592
            |||||| |||||||||||||| || |||||||| || ||||| |||||||||||||||||
Sbjct: 2967 gcaatagcgaaggacattcattaaggagtgtatgtgagattctgatgtgaaataaagcct 2908

                     
Query: 593  tgtgcggac 601
            ||| |||||
Sbjct: 2907 tgtccggac 2899
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>dbj|AK060749.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-F12, full
            insert sequence
          Length = 1817

 Score =  470 bits (237), Expect = e-129
 Identities = 382/429 (89%), Gaps = 1/429 (0%)
 Strand = Plus / Minus

                                                                        
Query: 173  gcagccggaggaaagtcctcaggaggcatggcaaacggccgcaccatcttctcaaacttg 232
            ||||| ||||| ||||| ||||||||||| ||||| || |||||||| ||||||||||||
Sbjct: 1568 gcagctggagggaagtcttcaggaggcatcgcaaatggtcgcaccattttctcaaacttg 1509

                                                                        
Query: 233  tccagtgtcaggcaagagccaacttcctgcagtctctcggggcccattatcggcagggtg 292
            |||||||| ||||| || |||||||||||||||||||| || ||||||||||||||||||
Sbjct: 1508 tccagtgttaggcaggaaccaacttcctgcagtctctcaggccccattatcggcagggtg 1449

                                                                        
Query: 293  tgctcctggagcaacggagaagtttcactggttttgtcctcgagagggctgagatcagca 352
            |||||||||||||| | || | ||||||||||||| ||||| ||||| || |||||||||
Sbjct: 1448 tgctcctggagcaaggaagtattttcactggttttatcctctagaggactaagatcagca 1389

                                                                        
Query: 353  ccacgactgaatgtcatttcgatccggaacctttcctcatcttctaaaggaacctctgta 412
            |||||||| ||||||||||| ||||||||||||| |||||| |||||||||||||| |||
Sbjct: 1388 ccacgactaaatgtcatttcaatccggaaccttttctcatcctctaaaggaacctcagta 1329

                                                                        
Query: 413  ttttcgaacattctaagcacgatattgctcatataatcaagctccctggttctatgtagt 472
            ||||| |||||||||||||| ||||| ||||| || |||||||||||||||||||| |||
Sbjct: 1328 ttttcaaacattctaagcacaatattactcatgtagtcaagctccctggttctatgcagt 1269

                                                                        
Query: 473  cggtccagagtactttggcagacaaggctatcctctccatgtagagactcattccaagtt 532
            ||||| | ||  ||||||||||||||||||||||| || |||||| | ||| ||||||||
Sbjct: 1268 cggtctaaagcgctttggcagacaaggctatcctccccttgtagacattca-tccaagtt 1210

                                                                        
Query: 533  gcaataccgaaggacattcatcaatgagtgtatatgggattccgatgtgaaataaagcct 592
            |||||| |||||||||||||| || |||||||| || ||||| |||||||||||||||||
Sbjct: 1209 gcaatagcgaaggacattcattaaggagtgtatgtgagattctgatgtgaaataaagcct 1150

                     
Query: 593  tgtgcggac 601
            ||| |||||
Sbjct: 1149 tgtccggac 1141
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>gb|AC097277.6| Oryza sativa chromosome 3 BAC OSJNBa0022C08 genomic sequence, complete
             sequence
          Length = 150155

 Score =  182 bits (92), Expect = 9e-43
 Identities = 143/160 (89%)
 Strand = Plus / Plus

                                                                         
Query: 173   gcagccggaggaaagtcctcaggaggcatggcaaacggccgcaccatcttctcaaacttg 232
             ||||| ||||| ||||| ||||||||||| ||||| || |||||||| ||||||||||||
Sbjct: 92149 gcagctggagggaagtcttcaggaggcatcgcaaatggtcgcaccattttctcaaacttg 92208

                                                                         
Query: 233   tccagtgtcaggcaagagccaacttcctgcagtctctcggggcccattatcggcagggtg 292
             |||||||| ||||| || |||||||||||||||||||| || ||||||||||||||||||
Sbjct: 92209 tccagtgttaggcaggaaccaacttcctgcagtctctcaggccccattatcggcagggtg 92268

                                                     
Query: 293   tgctcctggagcaacggagaagtttcactggttttgtcct 332
             |||||||||||||| | || | ||||||||||||| ||||
Sbjct: 92269 tgctcctggagcaaggaagtattttcactggttttatcct 92308



 Score =  167 bits (84), Expect = 5e-38
 Identities = 151/172 (87%), Gaps = 1/172 (0%)
 Strand = Plus / Plus

                                                                         
Query: 404   acctctgtattttcgaacattctaagcacgatattgctcatataatcaagctccctggtt 463
             ||||| |||||||| |||||||||||||| ||||| ||||| || |||||||||||||||
Sbjct: 92806 acctcagtattttcaaacattctaagcacaatattactcatgtagtcaagctccctggtt 92865

                                                                         
Query: 464   ctatgtagtcggtccagagtactttggcagacaaggctatcctctccatgtagagactca 523
             ||||| |||||||| | ||  ||||||||||||||||||||||| || |||||| | |||
Sbjct: 92866 ctatgcagtcggtctaaagcgctttggcagacaaggctatcctccccttgtagacattca 92925

                                                                 
Query: 524   ttccaagttgcaataccgaaggacattcatcaatgagtgtatatgggattcc 575
              |||||||||||||| |||||||||||||| || |||||||| || ||||||
Sbjct: 92926 -tccaagttgcaatagcgaaggacattcattaaggagtgtatgtgagattcc 92976



 Score =  107 bits (54), Expect = 4e-20
 Identities = 72/78 (92%)
 Strand = Plus / Plus

                                                                         
Query: 330   cctcgagagggctgagatcagcaccacgactgaatgtcatttcgatccggaacctttcct 389
             |||| ||||| || ||||||||||||||||| ||||||||||| ||||||||||||| ||
Sbjct: 92419 cctctagaggactaagatcagcaccacgactaaatgtcatttcaatccggaaccttttct 92478

                               
Query: 390   catcttctaaaggaacct 407
             ||||||||||||||||||
Sbjct: 92479 catcttctaaaggaacct 92496



 Score = 44.1 bits (22), Expect = 0.52
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 576   gatgtgaaataaagccttgtgcggac 601
             |||||||||||||||||||| |||||
Sbjct: 93064 gatgtgaaataaagccttgtccggac 93089
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  182 bits (92), Expect = 9e-43
 Identities = 143/160 (89%)
 Strand = Plus / Minus

                                                                            
Query: 173      gcagccggaggaaagtcctcaggaggcatggcaaacggccgcaccatcttctcaaacttg 232
                ||||| ||||| ||||| ||||||||||| ||||| || |||||||| ||||||||||||
Sbjct: 27212246 gcagctggagggaagtcttcaggaggcatcgcaaatggtcgcaccattttctcaaacttg 27212187

                                                                            
Query: 233      tccagtgtcaggcaagagccaacttcctgcagtctctcggggcccattatcggcagggtg 292
                |||||||| ||||| || |||||||||||||||||||| || ||||||||||||||||||
Sbjct: 27212186 tccagtgttaggcaggaaccaacttcctgcagtctctcaggccccattatcggcagggtg 27212127

                                                        
Query: 293      tgctcctggagcaacggagaagtttcactggttttgtcct 332
                |||||||||||||| | || | ||||||||||||| ||||
Sbjct: 27212126 tgctcctggagcaaggaagtattttcactggttttatcct 27212087



 Score =  167 bits (84), Expect = 5e-38
 Identities = 151/172 (87%), Gaps = 1/172 (0%)
 Strand = Plus / Minus

                                                                            
Query: 404      acctctgtattttcgaacattctaagcacgatattgctcatataatcaagctccctggtt 463
                ||||| |||||||| |||||||||||||| ||||| ||||| || |||||||||||||||
Sbjct: 27211589 acctcagtattttcaaacattctaagcacaatattactcatgtagtcaagctccctggtt 27211530

                                                                            
Query: 464      ctatgtagtcggtccagagtactttggcagacaaggctatcctctccatgtagagactca 523
                ||||| |||||||| | ||  ||||||||||||||||||||||| || |||||| | |||
Sbjct: 27211529 ctatgcagtcggtctaaagcgctttggcagacaaggctatcctccccttgtagacattca 27211470

                                                                    
Query: 524      ttccaagttgcaataccgaaggacattcatcaatgagtgtatatgggattcc 575
                 |||||||||||||| |||||||||||||| || |||||||| || ||||||
Sbjct: 27211469 -tccaagttgcaatagcgaaggacattcattaaggagtgtatgtgagattcc 27211419



 Score =  107 bits (54), Expect = 4e-20
 Identities = 72/78 (92%)
 Strand = Plus / Minus

                                                                            
Query: 330      cctcgagagggctgagatcagcaccacgactgaatgtcatttcgatccggaacctttcct 389
                |||| ||||| || ||||||||||||||||| ||||||||||| ||||||||||||| ||
Sbjct: 27211976 cctctagaggactaagatcagcaccacgactaaatgtcatttcaatccggaaccttttct 27211917

                                  
Query: 390      catcttctaaaggaacct 407
                ||||||||||||||||||
Sbjct: 27211916 catcttctaaaggaacct 27211899



 Score = 44.1 bits (22), Expect = 0.52
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                          
Query: 576      gatgtgaaataaagccttgtgcggac 601
                |||||||||||||||||||| |||||
Sbjct: 27211331 gatgtgaaataaagccttgtccggac 27211306
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  182 bits (92), Expect = 9e-43
 Identities = 143/160 (89%)
 Strand = Plus / Minus

                                                                            
Query: 173      gcagccggaggaaagtcctcaggaggcatggcaaacggccgcaccatcttctcaaacttg 232
                ||||| ||||| ||||| ||||||||||| ||||| || |||||||| ||||||||||||
Sbjct: 27303569 gcagctggagggaagtcttcaggaggcatcgcaaatggtcgcaccattttctcaaacttg 27303510

                                                                            
Query: 233      tccagtgtcaggcaagagccaacttcctgcagtctctcggggcccattatcggcagggtg 292
                |||||||| ||||| || |||||||||||||||||||| || ||||||||||||||||||
Sbjct: 27303509 tccagtgttaggcaggaaccaacttcctgcagtctctcaggccccattatcggcagggtg 27303450

                                                        
Query: 293      tgctcctggagcaacggagaagtttcactggttttgtcct 332
                |||||||||||||| | || | ||||||||||||| ||||
Sbjct: 27303449 tgctcctggagcaaggaagtattttcactggttttatcct 27303410



 Score =  167 bits (84), Expect = 5e-38
 Identities = 151/172 (87%), Gaps = 1/172 (0%)
 Strand = Plus / Minus

                                                                            
Query: 404      acctctgtattttcgaacattctaagcacgatattgctcatataatcaagctccctggtt 463
                ||||| |||||||| |||||||||||||| ||||| ||||| || |||||||||||||||
Sbjct: 27302912 acctcagtattttcaaacattctaagcacaatattactcatgtagtcaagctccctggtt 27302853

                                                                            
Query: 464      ctatgtagtcggtccagagtactttggcagacaaggctatcctctccatgtagagactca 523
                ||||| |||||||| | ||  ||||||||||||||||||||||| || |||||| | |||
Sbjct: 27302852 ctatgcagtcggtctaaagcgctttggcagacaaggctatcctccccttgtagacattca 27302793

                                                                    
Query: 524      ttccaagttgcaataccgaaggacattcatcaatgagtgtatatgggattcc 575
                 |||||||||||||| |||||||||||||| || |||||||| || ||||||
Sbjct: 27302792 -tccaagttgcaatagcgaaggacattcattaaggagtgtatgtgagattcc 27302742



 Score =  107 bits (54), Expect = 4e-20
 Identities = 72/78 (92%)
 Strand = Plus / Minus

                                                                            
Query: 330      cctcgagagggctgagatcagcaccacgactgaatgtcatttcgatccggaacctttcct 389
                |||| ||||| || ||||||||||||||||| ||||||||||| ||||||||||||| ||
Sbjct: 27303299 cctctagaggactaagatcagcaccacgactaaatgtcatttcaatccggaaccttttct 27303240

                                  
Query: 390      catcttctaaaggaacct 407
                ||||||||||||||||||
Sbjct: 27303239 catcttctaaaggaacct 27303222



 Score = 44.1 bits (22), Expect = 0.52
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                          
Query: 576      gatgtgaaataaagccttgtgcggac 601
                |||||||||||||||||||| |||||
Sbjct: 27302654 gatgtgaaataaagccttgtccggac 27302629
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>ref|NM_191480.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 3273

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 61/74 (82%)
 Strand = Plus / Minus

                                                                        
Query: 350  gcaccacgactgaatgtcatttcgatccggaacctttcctcatcttctaaaggaacctct 409
            |||||||||||  |||||||||| || || |||||||     ||||| |||| |||||||
Sbjct: 2945 gcaccacgactatatgtcatttctatgcgaaacctttttgggtcttccaaagaaacctct 2886

                          
Query: 410  gtattttcgaacat 423
            ||||| ||||||||
Sbjct: 2885 gtattctcgaacat 2872
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>ref|NM_191478.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1020

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 61/74 (82%)
 Strand = Plus / Minus

                                                                       
Query: 350 gcaccacgactgaatgtcatttcgatccggaacctttcctcatcttctaaaggaacctct 409
           |||||||||||  |||||||||| || || |||||||     ||||| |||| |||||||
Sbjct: 716 gcaccacgactatatgtcatttctatgcgaaacctttttgggtcttccaaagaaacctct 657

                         
Query: 410 gtattttcgaacat 423
           ||||| ||||||||
Sbjct: 656 gtattctcgaacat 643
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>emb|BX000359.7| Mouse DNA sequence from clone RP23-343C18 on chromosome 11 Contains the
             gene for a novel helix-loop-helix DNA-binding domain
             containing protein, a novel gene, the Gosr1 gene for golgi
             SNAP receptor complex member 1 and a CpG island, complete
             sequence
          Length = 118586

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                               
Query: 383   ctttcctcatcttctaaaggaacctctgtatttt 416
             |||||||||||||| |||| ||||| ||||||||
Sbjct: 28965 ctttcctcatcttcaaaagaaacctgtgtatttt 28998
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>gb|AC110794.3| Homo sapiens BAC clone RP11-598O12 from 4, complete sequence
          Length = 148841

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 26    tgaatattcacatgaactcatt 47
             ||||||||||||||||||||||
Sbjct: 97295 tgaatattcacatgaactcatt 97274
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>gb|AC129593.4| Mus musculus BAC clone RP24-142E6 from chromosome 7, complete sequence
          Length = 210291

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 440    ctcatataatcaagctccctg 460
              |||||||||||||||||||||
Sbjct: 170322 ctcatataatcaagctccctg 170302
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>gb|AC099589.12| Mus musculus chromosome 1, clone RP23-337A19, complete sequence
          Length = 264062

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 488   tggcagacaaggctatcctct 508
             |||||||||||||||||||||
Sbjct: 17415 tggcagacaaggctatcctct 17395
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>gb|AC104100.6| Mus musculus BAC clone RP24-374D12 from chromosome 7, complete sequence
          Length = 139125

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 440   ctcatataatcaagctccctg 460
             |||||||||||||||||||||
Sbjct: 39576 ctcatataatcaagctccctg 39556
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>gb|AE016819.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome VI,
              complete sequence
          Length = 1813164

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 485    ctttggcagacaaggctatcc 505
              |||||||||||||||||||||
Sbjct: 600182 ctttggcagacaaggctatcc 600202
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>ref|NM_210994.1| Eremothecium gossypii AFR093Wp (AFR093W), mRNA
          Length = 3396

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 485 ctttggcagacaaggctatcc 505
           |||||||||||||||||||||
Sbjct: 482 ctttggcagacaaggctatcc 502
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>emb|BX537323.9| Zebrafish DNA sequence from clone DKEYP-122E2 in linkage group 18,
             complete sequence
          Length = 77788

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 59    acagctttttcagccattttg 79
             |||||||||||||||||||||
Sbjct: 49707 acagctttttcagccattttg 49687
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>gb|AC133651.4| Mus musculus BAC clone RP24-239C15 from 1, complete sequence
          Length = 178756

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 488   tggcagacaaggctatcctct 508
             |||||||||||||||||||||
Sbjct: 78835 tggcagacaaggctatcctct 78855
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>gb|AC161878.3| Mus musculus BAC clone RP23-303B4 from chromosome 1, complete sequence
          Length = 169556

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 488    tggcagacaaggctatcctct 508
              |||||||||||||||||||||
Sbjct: 164576 tggcagacaaggctatcctct 164556
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>gb|AC151524.2| Medicago truncatula chromosome 7 BAC clone mth2-67a20, complete
             sequence
          Length = 99692

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 47/56 (83%)
 Strand = Plus / Plus

                                                                     
Query: 346   atcagcaccacgactgaatgtcatttcgatccggaacctttcctcatcttctaaag 401
             |||||| ||||||||||| ||||  || || |||||||||| |  |||||||||||
Sbjct: 46655 atcagccccacgactgaaggtcagctcaatgcggaaccttttcggatcttctaaag 46710
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>gb|AC170260.2| Mus musculus BAC clone RP24-347N1 from chromosome 5, complete sequence
          Length = 165011

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 16     caaagaggaatgaatattca 35
              ||||||||||||||||||||
Sbjct: 164029 caaagaggaatgaatattca 164010
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>gb|AC114629.12| Mus musculus chromosome 1, clone RP24-111F20, complete sequence
          Length = 178437

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 101   aaaggccagaaactagccag 120
             ||||||||||||||||||||
Sbjct: 55114 aaaggccagaaactagccag 55095
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>gb|AY369378.1| Feline immunodeficiency virus isolate CaONC01 gag protein (gag)
           gene, partial cds
          Length = 1049

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 56  ttcacagctttttcagccattttg 79
           ||||||||||||||||||| ||||
Sbjct: 834 ttcacagctttttcagccaatttg 857
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>gb|AF077542.1| Caenorhabditis elegans cosmid Y57G7A, complete sequence
          Length = 44315

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 408   ctgtattttcgaacattcta 427
             ||||||||||||||||||||
Sbjct: 10489 ctgtattttcgaacattcta 10508
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>emb|Z74473.1|CEF56H9 Caenorhabditis elegans Cosmid F56H9, complete sequence
          Length = 28291

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 215   accatcttctcaaacttgtc 234
             ||||||||||||||||||||
Sbjct: 26011 accatcttctcaaacttgtc 26030
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>gb|AC123054.2| Mus musculus BAC clone RP24-220N11 from 5, complete sequence
          Length = 174874

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 16    caaagaggaatgaatattca 35
             ||||||||||||||||||||
Sbjct: 62234 caaagaggaatgaatattca 62253
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>gb|AC112491.4| Homo sapiens 3 BAC RP11-3P17 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 154758

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 481    agtactttggcagacaaggc 500
              ||||||||||||||||||||
Sbjct: 105606 agtactttggcagacaaggc 105625
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>emb|BX927150.1| Corynebacterium glutamicum ATCC 13032, IS fingerprint type 4-5, complete
              genome; segment 3/10
          Length = 348475

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 201    tggcaaacggccgcaccatc 220
              ||||||||||||||||||||
Sbjct: 192493 tggcaaacggccgcaccatc 192512
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>gb|AC087302.7| Homo sapiens chromosome 17, clone RP11-761L11, complete sequence
          Length = 129564

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 59    acagctttttcagccatttt 78
             ||||||||||||||||||||
Sbjct: 96068 acagctttttcagccatttt 96049
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>gb|AC104639.3| Homo sapiens 3q BAC RP11-672L16 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 187942

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 543    aggacattcatcaatgagtg 562
              ||||||||||||||||||||
Sbjct: 133545 aggacattcatcaatgagtg 133526
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>gb|AC098680.3| Homo sapiens BAC clone RP11-600L4 from 4, complete sequence
          Length = 180918

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 537   taccgaaggacattcatcaa 556
             ||||||||||||||||||||
Sbjct: 53659 taccgaaggacattcatcaa 53640
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>gb|AC026473.7| Homo sapiens chromosome 16 clone RP11-51O6, complete sequence
          Length = 170393

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 543   aggacattcatcaatgagtg 562
             ||||||||||||||||||||
Sbjct: 38435 aggacattcatcaatgagtg 38454
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>ref|NM_073761.3| Caenorhabditis elegans abnormal cell LINeage family member (lin-25)
           (lin-25) mRNA, complete cds
          Length = 3527

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 215 accatcttctcaaacttgtc 234
           ||||||||||||||||||||
Sbjct: 235 accatcttctcaaacttgtc 254
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>gb|AC009169.9| Homo sapiens chromosome 16 clone RP11-90K18, complete sequence
          Length = 146399

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 543   aggacattcatcaatgagtg 562
             ||||||||||||||||||||
Sbjct: 75840 aggacattcatcaatgagtg 75859
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>dbj|BA000036.3| Corynebacterium glutamicum ATCC 13032 DNA, complete genome
          Length = 3309401

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 201    tggcaaacggccgcaccatc 220
              ||||||||||||||||||||
Sbjct: 888880 tggcaaacggccgcaccatc 888899
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>emb|BX927258.8| Zebrafish DNA sequence from clone CH211-279M15 in linkage group 20,
              complete sequence
          Length = 146407

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 310    agaagtttcactggttttgt 329
              ||||||||||||||||||||
Sbjct: 131358 agaagtttcactggttttgt 131339
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>emb|CR361565.8| Zebrafish DNA sequence from clone CH211-242L1 in linkage group 22,
             complete sequence
          Length = 164475

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 21    aggaatgaatattcacatga 40
             ||||||||||||||||||||
Sbjct: 40322 aggaatgaatattcacatga 40341
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>gb|AC006120.1|AC006120 Homo sapiens chromosome 17, clone hRPK.346_K_10, complete sequence
          Length = 168753

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 59     acagctttttcagccatttt 78
              ||||||||||||||||||||
Sbjct: 141749 acagctttttcagccatttt 141768
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>emb|AL935060.17| Mouse DNA sequence from clone RP24-151H6 on chromosome 2, complete
              sequence
          Length = 212007

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 488    tggcagacaaggctatcctc 507
              ||||||||||||||||||||
Sbjct: 173749 tggcagacaaggctatcctc 173730
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>gb|U20168.1|CEU20168 Caenorhabditis elegans Lin-25 protein (lin-25) gene, complete cds
          Length = 3569

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 215 accatcttctcaaacttgtc 234
           ||||||||||||||||||||
Sbjct: 257 accatcttctcaaacttgtc 276


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,060,629
Number of Sequences: 3902068
Number of extensions: 5060629
Number of successful extensions: 94160
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 94015
Number of HSP's gapped (non-prelim): 138
length of query: 601
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 578
effective length of database: 17,143,297,704
effective search space: 9908826072912
effective search space used: 9908826072912
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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