Clone Information

BLAST Search Result

Clone Name	rbasd20a22
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	117	4e-23
2	dbj\|AP006167.3\| Oryza sativa (japonica cultivar-group) genomic D...	117	4e-23
3	dbj\|AP004672.3\| Oryza sativa (japonica cultivar-group) genomic D...	117	4e-23
4	dbj\|AK121135.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	117	4e-23
5	dbj\|AK067580.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	117	4e-23
6	dbj\|AK067355.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	117	4e-23
7	dbj\|AB102956.1\| Zea mays ZmHK2 mRNA for histidine kinase 2, comp...	105	2e-19
8	ref\|XM_463649.1\| Oryza sativa (japonica cultivar-group), predic...	98	4e-17
9	gb\|AY211489.1\| Oryza sativa (indica cultivar-group) histidine ki...	98	4e-17
10	gb\|AY211488.1\| Oryza sativa (indica cultivar-group) histidine ki...	98	4e-17
11	gb\|DQ248962.1\| Oryza sativa (indica cultivar-group) hybrid type ...	98	4e-17
12	emb\|BX294660.18\| Zebrafish DNA sequence from clone CH211-234D4 i...	44	0.52
13	emb\|BX539336.7\| Zebrafish DNA sequence from clone CH211-128H21 i...	44	0.52
14	emb\|CR376826.12\| Zebrafish DNA sequence from clone DKEYP-78F1 in...	44	0.52
15	emb\|BX649503.3\| Zebrafish DNA sequence from clone DKEYP-90A8 in ...	44	0.52
16	ref\|XM_881327.1\| PREDICTED: Bos taurus similar to HP1-BP74, tran...	42	2.1
17	ref\|XM_868129.1\| PREDICTED: Bos taurus similar to HP1-BP74, tran...	42	2.1
18	emb\|CR932998.12\| Zebrafish DNA sequence from clone DKEY-111I23 i...	42	2.1
19	emb\|AL590079.3\|CNS07EG6 Human chromosome 14 DNA sequence Partial...	42	2.1
20	gb\|AE017345.1\| Cryptococcus neoformans var. neoformans JEC21 chr...	40	8.2
21	gb\|AC122487.3\| Mus musculus BAC clone RP24-381E21 from chromosom...	40	8.2
22	gb\|AC127382.4\| Homo sapiens BAC clone RP11-1380M11 from UL, comp...	40	8.2
23	gb\|AC119415.13\| Medicago truncatula clone mth2-27n2, complete se...	40	8.2
24	emb\|AL358781.19\| Human DNA sequence from clone RP11-334J6 on chr...	40	8.2
25	gb\|AC131631.5\| Rattus norvegicus 2 BAC CH230-16C23 (Children's H...	40	8.2
26	emb\|AL596025.22\| Mouse DNA sequence from clone RP23-215H18 on ch...	40	8.2
27	emb\|BX323864.8\| Zebrafish DNA sequence from clone CH211-218K4 in...	40	8.2
28	emb\|AL845302.4\| Zebrafish DNA sequence from clone CH211-108C6 in...	40	8.2
29	gb\|CP000077.1\| Sulfolobus acidocaldarius DSM 639, complete genome	40	8.2
30	emb\|BX511254.6\| Zebrafish DNA sequence from clone DKEYP-90G2 in ...	40	8.2
31	emb\|BX005425.12\| Zebrafish DNA sequence from clone DKEY-7O6 in l...	40	8.2
32	gb\|CP000267.1\| Rhodoferax ferrireducens DSM 15236, complete genome	40	8.2
33	emb\|BX323874.4\| Zebrafish DNA sequence from clone DKEY-104N21 in...	40	8.2
34	gb\|AC018501.9\| Homo sapiens chromosome 3 clone RP11-283K15 map 3...	40	8.2
35	emb\|BX571853.4\| Zebrafish DNA sequence from clone DKEY-29H14 in ...	40	8.2
36	gb\|AC136375.2\| Homo sapiens BAC clone RP11-104P1 from 2, complet...	40	8.2
37	gb\|AC000362.1\|HSAC000362 Human cosmid g1346a094, complete sequence	40	8.2
38	emb\|AL929229.6\| Zebrafish DNA sequence from clone CH211-1E14 in ...	40	8.2
39	emb\|CT010459.8\| M.truncatula DNA sequence from clone MTH2-35J4 o...	40	8.2
40	gb\|AC005245.1\|AC005245 Homo sapiens chromosome 17, clone hRPK.64...	40	8.2
41	gb\|AC130831.4\| Mus musculus BAC clone RP24-80P9 from 14, complet...	40	8.2
42	gb\|AC140198.4\| Mus musculus BAC clone RP23-255C4 from 16, comple...	40	8.2
43	emb\|AL929017.9\| Zebrafish DNA sequence from clone DKEY-4C15 in l...	40	8.2
44	gb\|AC090955.3\| Homo sapiens chromosome 3 clone RP11-622A14 map 3...	40	8.2
45	emb\|AL671759.10\| Mouse DNA sequence from clone RP23-151A15 on ch...	40	8.2

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  117 bits (59), Expect = 4e-23
 Identities = 92/103 (89%)
 Strand = Plus / Plus

                                                                            
Query: 500      aatttacactccatatagacctacctactgaacatggtcatgattttggaaaaatcgagt 559
                |||||||| |||||||| |||| |||| | ||| |||||||||||||||||||| || | 
Sbjct: 40397252 aatttacattccatataaaccttcctattcaacttggtcatgattttggaaaaaccgcgc 40397311

                                                           
Query: 560      tacttctctgtacaactgctccccttcaaatggcttggagaca 602
                |||||| ||||||| ||||||||||||||||||||||||||||
Sbjct: 40397312 tacttcgctgtacagctgctccccttcaaatggcttggagaca 40397354

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>dbj|AP006167.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1455F06
          Length = 140848

 Score =  117 bits (59), Expect = 4e-23
 Identities = 92/103 (89%)
 Strand = Plus / Plus

                                                                          
Query: 500    aatttacactccatatagacctacctactgaacatggtcatgattttggaaaaatcgagt 559
              |||||||| |||||||| |||| |||| | ||| |||||||||||||||||||| || | 
Sbjct: 106216 aatttacattccatataaaccttcctattcaacttggtcatgattttggaaaaaccgcgc 106275

                                                         
Query: 560    tacttctctgtacaactgctccccttcaaatggcttggagaca 602
              |||||| ||||||| ||||||||||||||||||||||||||||
Sbjct: 106276 tacttcgctgtacagctgctccccttcaaatggcttggagaca 106318

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>dbj|AP004672.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0592G05
          Length = 146220

 Score =  117 bits (59), Expect = 4e-23
 Identities = 92/103 (89%)
 Strand = Plus / Plus

                                                                         
Query: 500   aatttacactccatatagacctacctactgaacatggtcatgattttggaaaaatcgagt 559
             |||||||| |||||||| |||| |||| | ||| |||||||||||||||||||| || | 
Sbjct: 48493 aatttacattccatataaaccttcctattcaacttggtcatgattttggaaaaaccgcgc 48552

                                                        
Query: 560   tacttctctgtacaactgctccccttcaaatggcttggagaca 602
             |||||| ||||||| ||||||||||||||||||||||||||||
Sbjct: 48553 tacttcgctgtacagctgctccccttcaaatggcttggagaca 48595

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>dbj|AK121135.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023077D19, full
            insert sequence
          Length = 4044

 Score =  117 bits (59), Expect = 4e-23
 Identities = 92/103 (89%)
 Strand = Plus / Minus

                                                                        
Query: 500  aatttacactccatatagacctacctactgaacatggtcatgattttggaaaaatcgagt 559
            |||||||| |||||||| |||| |||| | ||| |||||||||||||||||||| || | 
Sbjct: 3500 aatttacattccatataaaccttcctattcaacttggtcatgattttggaaaaaccgcgc 3441

                                                       
Query: 560  tacttctctgtacaactgctccccttcaaatggcttggagaca 602
            |||||| ||||||| ||||||||||||||||||||||||||||
Sbjct: 3440 tacttcgctgtacagctgctccccttcaaatggcttggagaca 3398

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>dbj|AK067580.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013112K17, full
            insert sequence
          Length = 2629

 Score =  117 bits (59), Expect = 4e-23
 Identities = 92/103 (89%)
 Strand = Plus / Minus

                                                                        
Query: 500  aatttacactccatatagacctacctactgaacatggtcatgattttggaaaaatcgagt 559
            |||||||| |||||||| |||| |||| | ||| |||||||||||||||||||| || | 
Sbjct: 2083 aatttacattccatataaaccttcctattcaacttggtcatgattttggaaaaaccgcgc 2024

                                                       
Query: 560  tacttctctgtacaactgctccccttcaaatggcttggagaca 602
            |||||| ||||||| ||||||||||||||||||||||||||||
Sbjct: 2023 tacttcgctgtacagctgctccccttcaaatggcttggagaca 1981

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>dbj|AK067355.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013099L13, full
            insert sequence
          Length = 1829

 Score =  117 bits (59), Expect = 4e-23
 Identities = 92/103 (89%)
 Strand = Plus / Minus

                                                                        
Query: 500  aatttacactccatatagacctacctactgaacatggtcatgattttggaaaaatcgagt 559
            |||||||| |||||||| |||| |||| | ||| |||||||||||||||||||| || | 
Sbjct: 1339 aatttacattccatataaaccttcctattcaacttggtcatgattttggaaaaaccgcgc 1280

                                                       
Query: 560  tacttctctgtacaactgctccccttcaaatggcttggagaca 602
            |||||| ||||||| ||||||||||||||||||||||||||||
Sbjct: 1279 tacttcgctgtacagctgctccccttcaaatggcttggagaca 1237

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>dbj|AB102956.1| Zea mays ZmHK2 mRNA for histidine kinase 2, complete cds
          Length = 3609

 Score =  105 bits (53), Expect = 2e-19
 Identities = 86/97 (88%)
 Strand = Plus / Minus

                                                                        
Query: 502  tttacactccatatagacctacctactgaacatggtcatgattttggaaaaatcgagtta 561
            |||||||||||||||  |||||||||||||| ||||| |||||| ||||||| |||| ||
Sbjct: 3074 tttacactccatataagcctacctactgaacttggtcttgatttaggaaaaagcgagcta 3015

                                                 
Query: 562  cttctctgtacaactgctccccttcaaatggcttgga 598
            ||||||||||||| ||||| || || |||||||||||
Sbjct: 3014 cttctctgtacaattgctcgccctcgaatggcttgga 2978

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>ref|XM_463649.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 3072

 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 64/69 (92%)
 Strand = Plus / Minus

                                                                        
Query: 534  tggtcatgattttggaaaaatcgagttacttctctgtacaactgctccccttcaaatggc 593
            |||||||||||||||||||| || | |||||| ||||||| |||||||||||||||||||
Sbjct: 3062 tggtcatgattttggaaaaaccgcgctacttcgctgtacagctgctccccttcaaatggc 3003

                     
Query: 594  ttggagaca 602
            |||||||||
Sbjct: 3002 ttggagaca 2994

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>gb|AY211489.1| Oryza sativa (indica cultivar-group) histidine kinase (HK1) gene,
           partial cds
          Length = 1794

 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 64/69 (92%)
 Strand = Plus / Plus

                                                                       
Query: 534 tggtcatgattttggaaaaatcgagttacttctctgtacaactgctccccttcaaatggc 593
           |||||||||||||||||||| || | |||||| ||||||| |||||||||||||||||||
Sbjct: 11  tggtcatgattttggaaaaaccgcgctacttcgctgtacagctgctccccttcaaatggc 70

                    
Query: 594 ttggagaca 602
           |||||||||
Sbjct: 71  ttggagaca 79

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>gb|AY211488.1| Oryza sativa (indica cultivar-group) histidine kinase (HK1) mRNA,
            partial cds
          Length = 1467

 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 64/69 (92%)
 Strand = Plus / Minus

                                                                        
Query: 534  tggtcatgattttggaaaaatcgagttacttctctgtacaactgctccccttcaaatggc 593
            |||||||||||||||||||| || | |||||| ||||||| |||||||||||||||||||
Sbjct: 1457 tggtcatgattttggaaaaaccgcgctacttcgctgtacagctgctccccttcaaatggc 1398

                     
Query: 594  ttggagaca 602
            |||||||||
Sbjct: 1397 ttggagaca 1389

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>gb|DQ248962.1| Oryza sativa (indica cultivar-group) hybrid type histidine kinase
            mRNA, complete cds
          Length = 3072

 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 64/69 (92%)
 Strand = Plus / Minus

                                                                        
Query: 534  tggtcatgattttggaaaaatcgagttacttctctgtacaactgctccccttcaaatggc 593
            |||||||||||||||||||| || | |||||| ||||||| |||||||||||||||||||
Sbjct: 3062 tggtcatgattttggaaaaaccgcgctacttcgctgtacagctgctccccttcaaatggc 3003

                     
Query: 594  ttggagaca 602
            |||||||||
Sbjct: 3002 ttggagaca 2994

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>emb|BX294660.18| Zebrafish DNA sequence from clone CH211-234D4 in linkage group 23,
             complete sequence
          Length = 200676

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 175   tacattttacatttacattaca 196
             ||||||||||||||||||||||
Sbjct: 77807 tacattttacatttacattaca 77786

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>emb|BX539336.7| Zebrafish DNA sequence from clone CH211-128H21 in linkage group 23,
             complete sequence
          Length = 183357

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 175   tacattttacatttacattaca 196
             ||||||||||||||||||||||
Sbjct: 72738 tacattttacatttacattaca 72759

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>emb|CR376826.12| Zebrafish DNA sequence from clone DKEYP-78F1 in linkage group 20,
             complete sequence
          Length = 153344

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 175   tacattttacatttacattaca 196
             ||||||||||||||||||||||
Sbjct: 33480 tacattttacatttacattaca 33459

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>emb|BX649503.3| Zebrafish DNA sequence from clone DKEYP-90A8 in linkage group 4, complete
              sequence
          Length = 189355

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 175    tacattttacatttacattaca 196
              ||||||||||||||||||||||
Sbjct: 115354 tacattttacatttacattaca 115333

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>ref|XM_881327.1| PREDICTED: Bos taurus similar to HP1-BP74, transcript variant 4
            (LOC510194), mRNA
          Length = 2314

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 395  gctccatctccaggtattttt 415
            |||||||||||||||||||||
Sbjct: 1473 gctccatctccaggtattttt 1493

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>ref|XM_868129.1| PREDICTED: Bos taurus similar to HP1-BP74, transcript variant 2
            (LOC510194), mRNA
          Length = 3261

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 395  gctccatctccaggtattttt 415
            |||||||||||||||||||||
Sbjct: 2420 gctccatctccaggtattttt 2440

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>emb|CR932998.12| Zebrafish DNA sequence from clone DKEY-111I23 in linkage group 9,
            complete sequence
          Length = 218171

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 178  attttacatttacattacaaa 198
            |||||||||||||||||||||
Sbjct: 2268 attttacatttacattacaaa 2288

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>emb|AL590079.3|CNS07EG6 Human chromosome 14 DNA sequence Partial sequence from BAC C-2502D3 of
             library CalTech-D from chromosome 14 of Homo sapiens
             (Human), complete sequence
          Length = 96532

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 80    gaaattcctgcacaaaccacc 100
             |||||||||||||||||||||
Sbjct: 53485 gaaattcctgcacaaaccacc 53465

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>gb|AE017345.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 5, complete
              sequence
          Length = 1507550

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 175    tacattttacatttacatta 194
              ||||||||||||||||||||
Sbjct: 767074 tacattttacatttacatta 767055

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>gb|AC122487.3| Mus musculus BAC clone RP24-381E21 from chromosome 17, complete sequence
          Length = 149666

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 179    ttttacatttacattacaaa 198
              ||||||||||||||||||||
Sbjct: 113703 ttttacatttacattacaaa 113684

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>gb|AC127382.4| Homo sapiens BAC clone RP11-1380M11 from UL, complete sequence
          Length = 179507

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 175   tacattttacatttacatta 194
             ||||||||||||||||||||
Sbjct: 47414 tacattttacatttacatta 47433

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>gb|AC119415.13| Medicago truncatula clone mth2-27n2, complete sequence
          Length = 139330

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 366   gtgtaccaagaagaaacaga 385
             ||||||||||||||||||||
Sbjct: 44414 gtgtaccaagaagaaacaga 44395

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>emb|AL358781.19| Human DNA sequence from clone RP11-334J6 on chromosome 9 Contains the
             3' end of the gene for a novel protein (KIAA0515), the
             RNU62 gene for U62 small nucleolar RNA, a novel gene
             identical to the RNU62 gene, the POMT1 gene for
             protein-O-mannosyltransferase 1, a novel gene, the gene
             for uridine-cytidine kinase 1 (UCK1) and three CpG
             islands, complete sequence
          Length = 147492

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 537   tcatgattttggaaaaatcg 556
             ||||||||||||||||||||
Sbjct: 18596 tcatgattttggaaaaatcg 18615

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>gb|AC131631.5| Rattus norvegicus 2 BAC CH230-16C23 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 207805

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 535   ggtcatgattttggaaaaat 554
             ||||||||||||||||||||
Sbjct: 37402 ggtcatgattttggaaaaat 37383

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>emb|AL596025.22| Mouse DNA sequence from clone RP23-215H18 on chromosome 11 Contains a
              novel gene and the 3' end of a gene that is a possible
              ortholog of human dynein axonemal heavy polypeptide 9
              (DNAH9), complete sequence
          Length = 190066

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 175    tacattttacatttacatta 194
              ||||||||||||||||||||
Sbjct: 163928 tacattttacatttacatta 163909

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>emb|BX323864.8| Zebrafish DNA sequence from clone CH211-218K4 in linkage group 17,
            complete sequence
          Length = 154824

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 175  tacattttacatttacatta 194
            ||||||||||||||||||||
Sbjct: 8091 tacattttacatttacatta 8110

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>emb|AL845302.4| Zebrafish DNA sequence from clone CH211-108C6 in linkage group 5
            Contains part of a novel gene similar to human SSH1
            (slingshot 1), a novel gene, part of a novel gene similar
            to human CORO1C (actin binding protein coronin 1C) and a
            CpG island, complete sequence
          Length = 147219

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 167  tctctccctacattttacatttac 190
            |||| |||||||||||||||||||
Sbjct: 3415 tctcgccctacattttacatttac 3438

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>gb|CP000077.1| Sulfolobus acidocaldarius DSM 639, complete genome
          Length = 2225959

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 338   ccttttttctttgcctcttg 357
             ||||||||||||||||||||
Sbjct: 24085 ccttttttctttgcctcttg 24104

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>emb|BX511254.6| Zebrafish DNA sequence from clone DKEYP-90G2 in linkage group 17,
            complete sequence
          Length = 185139

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 175  tacattttacatttacatta 194
            ||||||||||||||||||||
Sbjct: 2552 tacattttacatttacatta 2571

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>emb|BX005425.12| Zebrafish DNA sequence from clone DKEY-7O6 in linkage group 8, complete
             sequence
          Length = 252440

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 175   tacattttacatttacatta 194
             ||||||||||||||||||||
Sbjct: 48599 tacattttacatttacatta 48580

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>gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome
          Length = 4712337

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 330     gcttcacaccttttttctttgcct 353
               ||||||||||||||||||| ||||
Sbjct: 4394635 gcttcacaccttttttcttggcct 4394658

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>emb|BX323874.4| Zebrafish DNA sequence from clone DKEY-104N21 in linkage group 16,
              complete sequence
          Length = 256605

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 330    gcttcacaccttttttcttt 349
              ||||||||||||||||||||
Sbjct: 130492 gcttcacaccttttttcttt 130473

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>gb|AC018501.9| Homo sapiens chromosome 3 clone RP11-283K15 map 3p, complete sequence
          Length = 202070

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 175   tacattttacatttacatta 194
             ||||||||||||||||||||
Sbjct: 41128 tacattttacatttacatta 41147

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>emb|BX571853.4| Zebrafish DNA sequence from clone DKEY-29H14 in linkage group 16,
              complete sequence
          Length = 191052

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 330    gcttcacaccttttttcttt 349
              ||||||||||||||||||||
Sbjct: 135547 gcttcacaccttttttcttt 135528

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>gb|AC136375.2| Homo sapiens BAC clone RP11-104P1 from 2, complete sequence
          Length = 17863

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 177  cattttacatttacattaca 196
            ||||||||||||||||||||
Sbjct: 6394 cattttacatttacattaca 6375

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>gb|AC000362.1|HSAC000362 Human cosmid g1346a094, complete sequence
          Length = 40977

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 175   tacattttacatttacatta 194
             ||||||||||||||||||||
Sbjct: 14628 tacattttacatttacatta 14609

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>emb|AL929229.6| Zebrafish DNA sequence from clone CH211-1E14 in linkage group 18,
              complete sequence
          Length = 184794

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 174    ctacattttacatttacatt 193
              ||||||||||||||||||||
Sbjct: 148366 ctacattttacatttacatt 148385

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>emb|CT010459.8| M.truncatula DNA sequence from clone MTH2-35J4 on chromosome 3,
             complete sequence
          Length = 128491

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 71    cacaaaagggaaattcctgc 90
             ||||||||||||||||||||
Sbjct: 90475 cacaaaagggaaattcctgc 90494

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>gb|AC005245.1|AC005245 Homo sapiens chromosome 17, clone hRPK.642_C_21, complete sequence
          Length = 172084

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 397   tccatctccaggtatttttt 416
             ||||||||||||||||||||
Sbjct: 25578 tccatctccaggtatttttt 25597



 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 397   tccatctccaggtatttttt 416
             ||||||||||||||||||||
Sbjct: 23934 tccatctccaggtatttttt 23953

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>gb|AC130831.4| Mus musculus BAC clone RP24-80P9 from 14, complete sequence
          Length = 233804

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 382    cagagcctgggtggctccatctcc 405
              |||||||||||||||||| |||||
Sbjct: 104770 cagagcctgggtggctccctctcc 104793

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>gb|AC140198.4| Mus musculus BAC clone RP23-255C4 from 16, complete sequence
          Length = 198007

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 370    accaagaagaaacagagcct 389
              ||||||||||||||||||||
Sbjct: 160236 accaagaagaaacagagcct 160255

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>emb|AL929017.9| Zebrafish DNA sequence from clone DKEY-4C15 in linkage group 20,
             complete sequence
          Length = 208922

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 177   cattttacatttacattaca 196
             ||||||||||||||||||||
Sbjct: 96020 cattttacatttacattaca 96001

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>gb|AC090955.3| Homo sapiens chromosome 3 clone RP11-622A14 map 3p, complete sequence
          Length = 209168

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 175    tacattttacatttacatta 194
              ||||||||||||||||||||
Sbjct: 176108 tacattttacatttacatta 176127

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>emb|AL671759.10| Mouse DNA sequence from clone RP23-151A15 on chromosome 4, complete
              sequence
          Length = 141790

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 374    agaagaaacagagcctgggt 393
              ||||||||||||||||||||
Sbjct: 117512 agaagaaacagagcctgggt 117531


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,897,527
Number of Sequences: 3902068
Number of extensions: 5897527
Number of successful extensions: 153956
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 153798
Number of HSP's gapped (non-prelim): 158
length of query: 602
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 579
effective length of database: 17,143,297,704
effective search space: 9925969370616
effective search space used: 9925969370616
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result